Blood manifest: 2 samples
Loaded 9,638 rows from 2 blood samples in 0.0s
GC reference: 4,819 probes
Pass 1: 4-feat blood GAM (16 workers)...
2/2 blood samples, 0s, R²=0.6460
Excluded 2 samples with chrX < 0.1 (data quality)
Probe coverage: 4,819/4,819 valid probes
Preliminary 5-feat GAM on blood (16 workers)...
2/2 blood prelim 5-feat, 0s, R²=0.9587
Probe mask: 237 masked (4.9%) — 80 low cov, 186 high var, 20 extreme
Wrote batch_reference.parquet (4,819 probes) to ./batch_reference.parquet
Wrote sex_calls.csv (2 samples) to ./sex_calls.csv
Wrote feature_stats.csv (2 samples) to ./feature_stats.csv
Build reference complete in 1.1s total