Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_Blood.recalibrated.bam.bai
Deduplicated 15 probes with identical coordinates
Loaded 4819 probes across 3366 contigs
Deduplicated 15 probes with identical coordinates
Loaded 4819 probes across 3366 contigs
Deduplicated 15 probes with identical coordinates
Loaded 4819 probes across 3366 contigs
Deduplicated 15 probes with identical coordinates
Loaded 4819 probes across 3366 contigs
Reads: 2744 total, 194 skipped (flags/unmapped)
Fragments: 1280 total (1270 tlen-paired, 0 hash-paired, 0 singletons, 0 discordant, 10 orphans, 0 too large [>5000 bp], 29 duplicates)
Reads: 3569 total, 648 skipped (flags/unmapped)
Fragments: 1463 total (1457 tlen-paired, 0 hash-paired, 0 singletons, 1 discordant, 5 orphans, 0 too large [>5000 bp], 31 duplicates)
Reads: 3937 total, 292 skipped (flags/unmapped)
Fragments: 1825 total (1819 tlen-paired, 0 hash-paired, 0 singletons, 1 discordant, 5 orphans, 0 too large [>5000 bp], 49 duplicates)
Reads: 2442572 total, 697 skipped (flags/unmapped)
Fragments: 1220670 total (1220439 tlen-paired, 118 hash-paired, 19 singletons, 10 discordant, 84 orphans, 319 too large [>5000 bp], 185606 duplicates)