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1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1_segments.tsv
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s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/calls/somatic_cnv_clinical_2674-0607-0342__44c19e3--20260607-034211/variant_calling/somatic_cnv/1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1/segments/1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1_segments.tsv
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somatic_cnv_clinical_2674-0607-0342
Published
Jun 06, 2026 11:20 PM

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seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type
1 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr1 69765 248918363 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 43229 5216 0.1476 0.1489 0.5343 988.2 0.155 0.0309 6 2 amp 4;6 0.0556 0.1501 0.3703 6 -0.156 81.84 -0.0044 0.0119 somatic
2 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr10 47057 14843601 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1332 260 0.2843 0.3083 0.54 716.0 0.2101 0.0466 5 2 amp 1;3;4;5;6 0.1451 0.1501 0.9667 6 -0.156 27.4 0.0003 0.0113 somatic
3 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr10 14848750 68574255 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 5115 725 0.108 0.1195 0.5388 582.0 0.1771 0.0387 3 1 amp 1;2;3;5;6 0.1427 0.1501 0.9507 6 -0.156 21.36 0.0086 -0.0109 somatic
4 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr10 68600925 133626762 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 10727 1471 0.1814 0.196 0.5398 763.2 0.1697 0.0353 6 2 amp 3;4;6 0.0682 0.1501 0.4547 6 -0.156 50.13 -0.0031 0.0104 somatic
5 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr11 193697 134387716 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 23634 2905 0.1445 0.1501 0.5365 951.0 0.1734 0.0382 6 2 amp 4;6 0.0556 0.1501 0.3703 6 -0.156 59.55 -0.0075 0.0203 somatic
6 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr12 66830 14481063 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 4394 554 0.1812 0.1966 0.5266 1487.8 0.112 0.0178 5 2 amp 1;3;5 0.0895 0.1501 0.5964 6 -0.156 31.58 -0.0005 0.0069 somatic
7 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr12 14481002 45893834 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 3742 444 0.0178 0.0288 0.5371 332.8 0.1983 0.0585 3 0 amp 2;3;5 0.0368 0.1501 0.2453 6 -0.156 5.6 -0.0085 -0.0036 somatic
8 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr12 45893834 49024763 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 898 166 0.1631 0.1796 0.5293 1187.0 0.1248 0.0191 6 2 amp 1 0.0577 0.1501 0.3844 6 -0.156 13.0 0.0056 -0.0094 somatic
9 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr12 49024763 49060804 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 588 1 -0.3505 -0.3156 0.5145 20869.0 0.0415 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 22.13 -0.1159 0.0 somatic
10 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr12 49065086 57048097 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 3639 219 0.216 0.2252 0.5368 970.0 0.1809 0.0345 6 2 amp 1;3;4 0.0777 0.1501 0.5181 6 -0.156 34.15 0.0075 -0.0129 somatic
11 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr12 57048206 103660426 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 5819 504 0.0854 0.0877 0.5194 425.0 0.115 0.0232 5 2 amp 3;4;5 0.0392 0.1501 0.2612 6 -0.156 17.07 0.003 0.0019 somatic
12 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr12 103660663 133234376 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 6568 719 0.1966 0.195 0.5309 851.0 0.1603 0.0291 5 2 amp 1;3;4;5 0.0969 0.1501 0.6457 6 -0.156 41.87 0.0008 0.0118 somatic
13 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr13 19173833 109756122 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 7563 794 0.0989 0.1207 0.532 425.0 0.1622 0.0375 6 2 amp 3;4;5 0.0392 0.1501 0.2612 6 -0.156 23.06 -0.01 0.0167 somatic
14 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr13 109756122 109786593 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 63 9 -0.3121 -0.297 0.5131 11323.0 0.095 0.0078 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 6.46 -0.0775 0.0449 somatic
15 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr13 110150344 114326203 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 927 178 0.2829 0.2949 0.5323 985.3 0.2008 0.0436 5 2 amp 1;2;3;5;6 0.1427 0.1501 0.9507 6 -0.156 22.63 0.0031 -0.0137 somatic
16 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr14 18601119 105588561 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 12772 1460 0.1608 0.1745 0.5364 676.5 0.1405 0.029 6 2 amp 2;4;6 0.0606 0.1501 0.4036 6 -0.156 48.28 -0.0041 0.007 somatic
17 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr14 105588501 105771457 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 205 33 -0.5025 -0.5016 0.626 11380.0 0.3233 0.1112 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 19.79 -0.2679 0.5076 somatic
18 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr14 105772618 105859890 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 96 4 -0.6462 -0.6189 0.5166 12037.0 0.0783 0.0039 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 16.49 -0.4116 0.0592 somatic
19 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr14 105860220 106874851 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 290 37 -0.0784 -0.0578 0.5718 5320.5 0.1191 0.0188 2 0 cn-loh 1;3;5;6 0.1377 0.1501 0.9174 6 -0.156 5.08 -0.0784 0.0012 somatic
20 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr15 20535569 85244052 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 12640 1158 0.1636 0.173 0.5289 588.0 0.1578 0.035 5 2 amp 1;2;5 0.0818 0.1501 0.5453 6 -0.156 48.28 -0.0034 0.0099 somatic
21 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr15 85244427 89311833 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 2256 238 0.0201 0.0327 0.5235 6843.0 0.0986 0.0139 3 0 amp 4;5 0.0265 0.1501 0.1768 6 -0.156 3.78 0.0011 0.0058 somatic
22 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr15 89312858 101819125 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1855 200 0.187 0.1734 0.5273 718.5 0.1518 0.0255 5 2 amp 2;3;4;5;6 0.0924 0.1501 0.6156 6 -0.156 21.11 -0.0002 -0.0016 somatic
23 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr16 47432 11254625 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 4327 642 0.1181 0.1033 0.5385 1300.0 0.1476 0.0282 4 1 amp 1;3;4 0.0777 0.1501 0.5181 6 -0.156 21.51 0.0101 -0.0124 somatic
24 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr16 11254618 11256305 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 32 1 -0.524 -0.4797 0.5085 15445.0 0.0824 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 7.72 -0.2894 0.0 somatic
25 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr16 11256994 90075935 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 12936 1577 0.1934 0.2041 0.5274 1174.5 0.1424 0.0245 5 2 amp 1;3;4;5 0.0969 0.1501 0.6457 6 -0.156 57.76 -0.0024 0.0018 somatic
26 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr17 137555 83094575 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 24448 2856 0.1988 0.2027 0.5354 1367.5 0.1436 0.0261 6 2 amp 2;5;6 0.0723 0.1501 0.4819 6 -0.156 82.14 0.0039 -0.0062 somatic
27 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr18 47389 80247372 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 7292 743 0.13 0.1406 0.5299 652.0 0.1481 0.0293 6 2 amp 6 0.0482 0.1501 0.321 6 -0.156 29.38 -0.0027 0.0006 somatic
28 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr19 110794 58571441 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 23402 3567 0.1489 0.1398 0.5323 1360.0 0.1363 0.0247 6 2 amp 4;6 0.0556 0.1501 0.3703 6 -0.156 60.95 -0.0031 0.0077 somatic
29 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr2 41522 86951424 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 11988 1034 0.1617 0.1611 0.5266 716.0 0.1508 0.0279 5 2 amp 3;5;6 0.08 0.1501 0.533 6 -0.156 46.41 -0.0017 0.0052 somatic
30 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr2 86952937 87816442 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 124 3 -0.4005 -0.3721 0.5872 1143.0 0.1183 0.0095 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 11.68 -0.1659 0.3288 somatic
31 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr2 87816861 102351921 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 2425 397 0.1541 0.1606 0.5502 1087.5 0.1968 0.0599 5 1 amp 1;2;4 0.0701 0.1501 0.467 6 -0.156 21.21 0.0099 -0.0135 somatic
32 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr2 102362628 232839974 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 18042 1770 0.098 0.1051 0.5366 600.0 0.158 0.0365 3 1 amp 1;2;5;6 0.13 0.1501 0.8663 6 -0.156 35.84 0.0072 -0.0081 somatic
33 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr2 232844031 241849991 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1957 389 0.2413 0.2588 0.532 1579.0 0.192 0.0424 5 2 amp 1;2;3;6 0.1235 0.1501 0.8232 6 -0.156 28.18 -0.0039 0.0038 somatic
34 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr2 241849991 241873273 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 61 16 -0.3516 -0.298 0.53 3827.0 0.1404 0.025 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 7.21 -0.117 0.1072 somatic
35 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr20 87677 64273595 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 10402 1397 0.1882 0.1966 0.5262 1121.0 0.1458 0.0249 5 2 amp 2;3;4;5;6 0.0924 0.1501 0.6156 6 -0.156 50.41 0.001 -0.0001 somatic
36 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr21 5117108 46664423 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 4669 817 0.1995 0.2116 0.5304 1072.0 0.135 0.0276 5 2 amp 1;2;3;4;5 0.1019 0.1501 0.679 6 -0.156 36.01 -0.0057 0.0089 somatic
37 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr22 15528158 21773025 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1470 174 0.1967 0.1982 0.5366 1486.0 0.1569 0.0276 6 2 amp 2;3;4;6 0.0732 0.1501 0.488 6 -0.156 19.97 -0.0005 -0.002 somatic
38 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr22 21788203 23838458 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1155 134 -0.0956 -0.0635 0.5283 11713.0 0.0622 0.0051 1 0 del 1;2;6 0.1109 0.1501 0.7388 6 -0.156 8.87 -0.0133 -0.0115 somatic
39 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr22 23838540 50782316 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 6784 795 0.194 0.1907 0.5291 1278.5 0.147 0.0256 5 2 amp 1;3;4;5 0.0969 0.1501 0.6457 6 -0.156 42.01 -0.0018 0.0096 somatic
40 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr3 319726 3034732 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 123 7 -0.1665 -0.1674 0.6133 114.0 0.4653 0.1627 2 0 cn-loh 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 5.3 -0.1665 0.0841 somatic
41 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr3 3034724 12294056 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1305 130 0.234 0.2463 0.5294 1214.2 0.1536 0.0311 5 2 amp 1;2;4;6 0.1182 0.1501 0.788 6 -0.156 22.14 -0.0016 -0.0057 somatic
42 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr3 12294056 12326816 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 228 71 0.3323 0.3764 0.5676 6040.0 0.218 0.0406 6 2 amp 1;2;4;5;6 0.1374 0.1501 0.9156 6 -0.156 13.93 -0.0179 0.0454 somatic
43 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr3 12326816 12379496 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 390 41 0.4425 0.4035 0.5478 5399.0 0.1383 0.023 7 3 high-amp 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 22.89 -0.0171 0.0717 somatic
44 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr3 12379496 72805716 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 11063 862 0.1763 0.1873 0.5342 864.5 0.1768 0.0378 6 2 amp 1;4 0.0651 0.1501 0.4337 6 -0.156 48.79 -0.0002 -0.0054 somatic
45 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr3 72812613 98521438 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 889 147 -0.0529 -0.0321 0.5813 735.0 0.1898 0.0439 2 0 cn-loh 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 8.92 -0.0529 -0.0037 somatic
46 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr3 98522791 182965801 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 10522 1113 0.0948 0.1019 0.5315 584.0 0.1823 0.0392 4 1 amp 1 0.0577 0.1501 0.3844 6 -0.156 26.21 0.0139 -0.016 somatic
47 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr3 182980054 198169878 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 3223 334 0.1727 0.1837 0.525 843.0 0.1403 0.0271 5 2 amp 1;4;5 0.0842 0.1501 0.5612 6 -0.156 25.69 0.0011 -0.0022 somatic
48 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr4 53399 42422941 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 4689 578 0.1422 0.1522 0.5348 882.8 0.1655 0.0327 6 2 amp 2;6 0.0532 0.1501 0.3543 6 -0.156 26.03 -0.0036 0.0164 somatic
49 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr4 42423601 182753605 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 12561 1237 0.0564 0.069 0.5348 377.0 0.1752 0.0382 7 1 high-amp 2;3 0.0177 0.1501 0.1178 6 -0.156 18.11 -0.006 0.0137 somatic
50 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr4 182754384 190027226 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1020 151 0.241 0.2678 0.5206 743.7 0.1397 0.0285 5 2 amp 1;4;6 0.1132 0.1501 0.7547 6 -0.156 20.09 0.0147 -0.0437 somatic
51 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr5 92183 1216679 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 401 111 0.229 0.2802 0.5532 1304.2 0.1716 0.0355 6 2 amp 2;3;4;5;6 0.0924 0.1501 0.6156 6 -0.156 12.73 -0.0156 0.0353 somatic
52 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr5 1216754 131962597 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 11193 1254 0.09 0.1041 0.5371 435.0 0.1998 0.0507 4 1 amp 3;6 0.0608 0.1501 0.4054 6 -0.156 26.22 0.0048 -0.0044 somatic
53 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr5 131962531 181367550 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 8818 1098 0.164 0.1789 0.5315 1107.0 0.169 0.0395 6 2 amp 2;4;6 0.0606 0.1501 0.4036 6 -0.156 40.77 -0.0009 -0.006 somatic
54 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 304553 29374911 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 3346 424 0.1514 0.1638 0.5278 892.5 0.1424 0.0256 6 2 amp 2;6 0.0532 0.1501 0.3543 6 -0.156 23.12 0.0056 -0.0116 somatic
55 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 29374935 32194957 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 2034 359 0.2335 0.2411 0.5505 1849.0 0.1209 0.0203 6 2 amp 2;3;4;5;6 0.0924 0.1501 0.6156 6 -0.156 28.46 -0.0111 0.0279 somatic
56 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 32194957 33088898 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 558 319 0.0678 0.0827 0.5756 10239.0 0.1042 0.0127 3 0 amp 1;2;3;4;5 0.1019 0.1501 0.679 6 -0.156 12.31 -0.0039 0.0039 somatic
57 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 33088898 33089378 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 4 13 0.3009 0.3613 0.6869 20285.4 0.3405 0.1089 6 0 amp 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 6.34 -0.0777 0.0577 somatic
58 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 33089378 37022363 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1397 131 0.2419 0.2519 0.5293 900.2 0.1006 0.016 5 2 amp 1;3;6 0.1185 0.1501 0.7899 6 -0.156 23.65 0.0058 -0.01 somatic
59 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 37025771 37171699 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 48 2 -0.5314 -0.4591 0.5278 1923.0 0.1609 0.061 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 9.59 -0.2968 0.0 somatic
60 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 37171639 44258245 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 2071 284 0.2033 0.197 0.524 1058.0 0.1619 0.0373 5 2 amp 1;3;4;5 0.0969 0.1501 0.6457 6 -0.156 24.23 0.0075 -0.0131 somatic
61 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 44258245 106109265 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 5568 562 0.0496 0.0614 0.5329 410.0 0.1709 0.0367 5 0 amp 3;4 0.0201 0.1501 0.1337 6 -0.156 10.76 0.0068 -0.0051 somatic
62 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 106109265 156802908 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 7413 756 0.1168 0.132 0.5313 661.0 0.1238 0.0228 6 2 amp 2;3;4;5 0.0442 0.1501 0.2946 6 -0.156 26.79 -0.0054 0.0131 somatic
63 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr6 156829196 170584636 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 2020 310 0.2253 0.2474 0.5375 1035.0 0.1317 0.0219 6 2 amp 1;2;5 0.0818 0.1501 0.5453 6 -0.156 26.8 0.0067 -0.0154 somatic
64 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr7 193154 13960782 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 2538 394 0.2544 0.2567 0.5251 1848.2 0.1071 0.0168 5 2 amp 1;5;6 0.125 0.1501 0.833 6 -0.156 33.56 0.0065 -0.0234 somatic
65 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr7 13960782 13986222 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 195 68 0.3905 0.3502 0.5596 5279.0 0.1512 0.0277 6 2 amp 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 14.78 0.0119 -0.0033 somatic
66 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr7 13986222 151214246 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 18027 2081 0.1913 0.2079 0.5422 772.0 0.1712 0.0384 6 2 amp 2;3;4;6 0.0732 0.1501 0.488 6 -0.156 68.33 -0.0059 0.0126 somatic
67 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr7 151214860 159144810 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1219 168 0.3131 0.318 0.5309 1131.5 0.1699 0.0371 5 2 amp 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 28.6 0.0202 -0.0226 somatic
68 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr8 166085 47931556 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 7323 884 0.2314 0.2289 0.5358 1169.0 0.1509 0.03 5 2 amp 1;3;6 0.1185 0.1501 0.7899 6 -0.156 52.15 -0.0047 0.0194 somatic
69 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr8 47932976 145054212 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 9892 995 0.1503 0.1597 0.5382 580.0 0.1911 0.0463 6 2 amp 1 0.0577 0.1501 0.3844 6 -0.156 39.79 -0.0072 0.0164 somatic
70 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr9 17350 111666934 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 11841 1314 0.1286 0.1319 0.5284 878.0 0.1353 0.0276 6 2 amp 6 0.0482 0.1501 0.321 6 -0.156 37.08 -0.0041 -0.0011 somatic
71 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr9 111686730 136494878 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 5965 853 0.2201 0.2251 0.5253 1075.0 0.141 0.0255 5 2 amp 1;6 0.1059 0.1501 0.7054 6 -0.156 44.53 0.0075 -0.0145 somatic
72 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr9 136494818 136663636 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 360 9 -0.4489 -0.374 0.5105 12040.0 0.0352 0.0 0 0 del 1;2;3;4;5;6 0.1501 0.1501 1.0 6 -0.156 22.18 -0.2143 0.0347 somatic
73 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chr9 136664679 138231128 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1048 156 0.1044 0.1055 0.5252 1410.5 0.1463 0.0208 6 2 amp 3;4;5 0.0392 0.1501 0.2612 6 -0.156 9.06 -0.0045 0.0069 somatic
74 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chrX 2853959 20187997 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 1728 81 0.1616 0.1823 0.5252 606.0 0.1464 0.0217 5 2 amp 2;4;5;6 0.0797 0.1501 0.5311 6 -0.156 17.54 -0.0013 -0.0027 somatic
75 1136_4IN-T1-TDNA-1_B23MCVGLT4_1_vs_1136_4IN-N1-BDNA-1_B23KFG5LT4_1 chrX 20188430 155545278 1136_4IN-T1-TDNA-1_B23MCVGLT4_1 1136_4IN-N1-BDNA-1_B23KFG5LT4_1 14832 603 0.0737 0.0818 0.5367 765.0 0.1547 0.0346 4 1 amp 1 0.0577 0.1501 0.3844 6 -0.156 24.22 -0.0072 0.009 somatic
76 rows