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1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1_segments.tsv
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somatic_cnv_clinical_2674-0607-0342
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Jun 06, 2026 11:21 PM

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seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type
1 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 69765 6475193 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1726 333 -0.126 -0.1223 0.5494 420.2 0.1801 0.0327 1 0 del 1;2 0.154 0.2394 0.6431 4 -0.33 15.79 -0.0104 -0.0079 somatic
2 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 6475431 15922391 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2577 374 0.1806 0.1805 0.5252 727.0 0.1435 0.0261 5 2 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 23.12 0.0066 -0.0045 somatic
3 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 15928034 15937889 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 281 0 -0.7172 -0.6996 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 29.8 -0.3224 0.0 somatic
4 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 15937785 18883477 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 832 134 -0.0262 -0.014 0.5637 601.0 0.1186 0.0227 2 0 cn-loh 1 0.1097 0.2394 0.4584 4 -0.33 8.23 -0.0262 0.0033 somatic
5 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 18885442 55072448 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 9458 955 0.2968 0.3035 0.5359 552.5 0.1999 0.0391 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 72.32 -0.003 -0.0153 somatic
6 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 55073800 119925865 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 8292 902 0.4451 0.4877 0.5401 756.0 0.1876 0.0438 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 101.22 0.0024 -0.0449 somatic
7 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 119926462 149487419 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 970 76 0.6897 0.7051 0.5649 1169.5 0.1779 0.041 7 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 53.64 0.013 0.0877 somatic
8 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 149554609 149900470 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 66 0 1.4445 1.4655 16 0 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 29.09 0.0245 0.0 somatic
9 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 149904958 150928019 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 501 61 0.8008 0.8302 0.6096 1012.5 0.4193 0.1854 8 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 45.58 0.0199 0.1401 somatic
10 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 150929923 152112924 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 739 76 0.5132 0.5425 0.5327 700.0 0.1938 0.0375 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 34.69 0.0705 -0.0758 somatic
11 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 152112958 152357701 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 140 43 -0.2626 -0.2104 0.5902 1886.5 0.1977 0.0461 1 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 10.43 -0.0787 0.0728 somatic
12 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr1 152358724 248918363 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 17713 2516 0.3899 0.3941 0.5358 689.0 0.1682 0.0346 5 2 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 129.83 0.0194 -0.0382 somatic
13 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 47057 42831096 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4006 502 0.4108 0.4343 0.5374 675.0 0.1697 0.0319 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 64.98 0.0132 -0.0418 somatic
14 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 43072064 43127158 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 146 25 -0.5605 -0.5501 0.5144 3405.5 0.0747 0.0071 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 16.8 -0.1657 0.0439 somatic
15 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 43127158 46027521 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 333 47 0.4411 0.443 0.5363 660.5 0.1961 0.0263 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 20.1 0.0435 -0.0465 somatic
16 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 46033389 49758613 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 559 154 0.0307 0.0539 0.5424 549.0 0.2031 0.0433 3 0 amp 2 0.0442 0.2394 0.1847 4 -0.33 5.52 -0.0008 0.006 somatic
17 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 49819313 68121947 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1197 114 0.511 0.5501 0.5247 599.0 0.1292 0.0275 6 3 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 43.88 0.002 0.0663 somatic
18 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 68121911 68646021 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 232 46 0.7478 0.7432 0.6252 1094.0 0.6131 0.4052 8 2 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 30.03 -0.0331 -0.0849 somatic
19 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 68645972 68646212 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 3 2 0.9636 0.9725 0.6224 25187.0 0.5763 0.3306 10 0 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 4.14 -0.0055 0.0 somatic
20 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 68646138 70420100 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 518 65 0.7519 0.7589 0.6077 506.0 0.4721 0.2423 8 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 43.59 -0.029 0.1217 somatic
21 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 70421699 72072943 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 349 99 0.182 0.1921 0.5636 485.0 0.2515 0.0842 5 1 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 10.81 0.008 -0.0087 somatic
22 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 72086905 121564572 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 7933 922 0.4855 0.5057 0.538 694.0 0.1756 0.0395 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 107.81 0.0428 -0.0546 somatic
23 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 121564512 127433475 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1098 195 0.3876 0.3918 0.55 1001.0 0.1561 0.0327 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 32.73 -0.01 0.0145 somatic
24 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr10 127439029 133626762 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 781 139 0.0332 0.0434 0.5692 461.5 0.329 0.1328 3 0 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 9.11 -0.0272 -0.0057 somatic
25 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 193697 1000621 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 651 84 0.2175 0.2125 0.5485 478.5 0.2861 0.0921 6 2 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 14.47 -0.0101 0.0119 somatic
26 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 1003671 1252424 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 397 142 -0.489 -0.4858 0.5766 489.0 0.2627 0.0856 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 26.16 -0.0942 0.2727 somatic
27 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 1252422 2899755 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 407 79 -0.1474 -0.1533 0.5883 376.3 0.2724 0.0914 1 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 11.39 0.0365 0.0421 somatic
28 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 2902594 17357007 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2932 452 0.4536 0.4602 0.534 959.5 0.1779 0.0357 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 61.32 0.0109 -0.0662 somatic
29 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 17367011 17788212 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 262 36 0.0115 -0.0192 0.548 546.5 0.3225 0.1284 2 0 cn-loh 3;4 0.0855 0.2394 0.3569 4 -0.33 2.98 0.0115 -0.0129 somatic
30 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 17788292 59810693 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4459 669 0.3488 0.3663 0.5423 731.0 0.1632 0.0301 5 2 amp 1;2;4 0.1818 0.2394 0.7595 4 -0.33 58.82 0.0009 -0.003 somatic
31 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 59829454 64351695 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1911 257 0.2286 0.2342 0.5337 617.0 0.1974 0.038 5 2 amp 1 0.1097 0.2394 0.4584 4 -0.33 25.29 0.0087 0.0086 somatic
32 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 64352071 65083577 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 568 50 -0.0271 -0.0161 0.521 562.5 0.079 0.0043 1 0 del 2 0.0442 0.2394 0.1847 4 -0.33 1.94 0.0052 0.0052 somatic
33 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 65083615 66844385 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1238 123 0.3872 0.3755 0.535 580.5 0.2029 0.0428 5 2 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 33.97 0.0167 -0.0442 somatic
34 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 66844870 69648178 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 880 128 0.6946 0.6968 0.6158 858.0 0.5265 0.295 7 2 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 53.4 0.0179 -0.0126 somatic
35 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 69648065 69810754 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 111 10 0.36 0.311 0.6797 10788.0 0.7029 0.4952 5 0 amp 1;2;4 0.1818 0.2394 0.7595 4 -0.33 11.9 0.0121 -0.0025 somatic
36 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 69816298 72759399 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 597 82 0.2255 0.2134 0.5511 339.5 0.2321 0.0511 6 2 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 14.39 -0.0021 0.0156 somatic
37 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 72780963 102864283 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 3481 427 0.5316 0.5639 0.539 689.0 0.167 0.0413 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 78.17 0.0889 -0.0507 somatic
38 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr11 102865769 134387716 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 5710 622 0.2919 0.3014 0.5356 555.0 0.1859 0.0381 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 55.32 -0.0079 -0.0165 somatic
39 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 66830 238069 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 72 10 -0.2505 -0.2245 0.5236 363.0 0.1457 0.0 0 0 del 1;2 0.154 0.2394 0.6431 4 -0.33 5.29 -0.0093 0.0526 somatic
40 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 242576 8875050 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2458 271 0.2906 0.3083 0.5304 682.0 0.1237 0.0184 5 2 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 36.02 0.0199 -0.023 somatic
41 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 8917674 47968245 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 5948 876 0.3868 0.4225 0.5246 830.3 0.1006 0.0166 6 3 amp 1;2 0.154 0.2394 0.6431 4 -0.33 74.24 -0.0005 0.0708 somatic
42 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 47972960 48000014 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 125 35 -0.1535 -0.1198 0.5665 1487.0 0.2079 0.0478 1 0 del 1;2;3 0.2115 0.2394 0.8836 4 -0.33 6.21 0.0078 0.0092 somatic
43 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 47999902 48727579 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 197 49 0.5277 0.5219 0.5492 807.5 0.2049 0.0416 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 18.72 0.085 -0.0073 somatic
44 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 48759151 49021704 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 213 1 0.0286 0.0592 0.5522 690.0 0.527 3 0 amp 2 0.0442 0.2394 0.1847 4 -0.33 1.03 -0.0029 0.0 somatic
45 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 49021704 49055377 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 612 6 -0.4901 -0.4155 0.5028 10992.0 0.0472 0.0011 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 30.06 -0.0953 0.0036 somatic
46 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 49058391 52952869 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1725 273 0.292 0.2997 0.5528 744.0 0.201 0.0445 6 2 amp 1 0.1097 0.2394 0.4584 4 -0.33 31.48 0.0057 0.0023 somatic
47 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 53006424 56082406 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1145 92 0.5485 0.5472 0.5476 653.5 0.2231 0.0638 6 3 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 46.25 -0.016 0.1598 somatic
48 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 56083311 56996039 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 726 11 0.4155 0.4098 0.5413 565.0 0.2081 0.034 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 27.79 0.0179 -0.0289 somatic
49 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 56996105 57752045 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1001 113 0.1046 0.1301 0.5254 783.0 0.1093 0.0165 6 2 amp 2 0.0442 0.2394 0.1847 4 -0.33 8.55 -0.0176 -0.0081 somatic
50 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 57752131 109227492 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 5931 573 0.3974 0.4395 0.5257 675.0 0.1512 0.0288 6 3 amp 1;2 0.154 0.2394 0.6431 4 -0.33 76.06 0.0101 0.0722 somatic
51 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 109232610 113003031 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1301 145 0.3353 0.3199 0.5319 541.0 0.1734 0.032 5 2 amp 1;3 0.1673 0.2394 0.6989 4 -0.33 30.18 0.0122 -0.0405 somatic
52 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 113003000 113098032 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 130 26 -0.7003 -0.5996 0.5185 3823.6 0.0617 0.0061 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 19.82 -0.3055 0.0611 somatic
53 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 113099885 114671519 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 278 59 0.0843 0.0965 0.5271 317.0 0.1874 0.0393 6 2 amp 4 0.0279 0.2394 0.1164 4 -0.33 3.8 0.006 0.0109 somatic
54 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 114671519 121494675 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1183 112 0.4506 0.4501 0.546 665.0 0.2511 0.0835 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 38.75 0.0079 -0.023 somatic
55 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr12 121509571 133234376 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2623 349 0.1191 0.105 0.5334 475.0 0.1506 0.0274 6 2 amp 2 0.0442 0.2394 0.1847 4 -0.33 16.13 -0.0031 0.0159 somatic
56 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr13 19173833 31802415 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1909 301 0.2621 0.2914 0.5242 734.5 0.1211 0.0219 5 2 amp 2;3;4 0.1297 0.2394 0.5416 4 -0.33 28.62 0.0057 -0.0412 somatic
57 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr13 32031757 112588032 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 6026 757 0.3948 0.4447 0.5305 628.0 0.1422 0.0263 5 2 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 76.36 0.0243 -0.061 somatic
58 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr13 112679320 114326203 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 578 149 0.0594 0.0418 0.5381 352.0 0.2238 0.0389 3 1 amp 1 0.1097 0.2394 0.4584 4 -0.33 5.46 -0.0177 0.006 somatic
59 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr14 18601119 23365098 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1230 190 0.4095 0.4173 0.5342 682.5 0.2044 0.0381 5 2 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 35.89 0.039 -0.0448 somatic
60 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr14 23372910 23535325 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 203 15 -0.3875 -0.322 0.5389 308.0 0.1632 0.01 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 13.75 0.0073 0.1105 somatic
61 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr14 23556751 24427851 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 621 89 0.2848 0.3017 0.5385 590.0 0.2271 0.054 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 17.95 -0.015 -0.0038 somatic
62 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr14 24427878 90919369 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 7459 854 0.454 0.4779 0.5282 649.0 0.1396 0.0263 6 3 amp 1;2;4 0.1818 0.2394 0.7595 4 -0.33 97.48 0.0065 0.0816 somatic
63 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr14 90920167 104052089 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2721 354 0.2566 0.265 0.5421 526.0 0.1837 0.0375 5 2 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 34.09 -0.0141 0.0198 somatic
64 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr14 104085751 105529785 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 596 113 -0.2375 -0.2346 0.5328 377.2 0.1657 0.0314 0 0 del 1;2 0.154 0.2394 0.6431 4 -0.33 14.68 0.0037 0.0903 somatic
65 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr14 105582585 105939986 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 444 125 -0.8005 -0.7663 0.5752 4529.0 0.1306 0.0216 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 43.01 -0.4057 0.2912 somatic
66 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr14 105939926 106874851 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 180 42 0.2207 0.2683 0.5427 3444.0 0.0985 0.0141 6 2 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 7.99 -0.0069 0.0114 somatic
67 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr15 20535569 41116307 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2866 442 0.333 0.3548 0.5347 687.0 0.1355 0.025 5 2 amp 1;3 0.1673 0.2394 0.6989 4 -0.33 44.75 0.0099 -0.0254 somatic
68 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr15 41183930 42167558 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 921 121 -0.0194 0.0066 0.5331 421.0 0.2138 0.0444 2 0 cn-loh 2 0.0442 0.2394 0.1847 4 -0.33 3.51 -0.0194 0.0052 somatic
69 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr15 42169672 45265152 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1584 223 0.3146 0.328 0.5257 691.0 0.1627 0.0326 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 31.22 0.0148 -0.0527 somatic
70 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr15 45265079 73301448 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4809 661 0.4051 0.4388 0.5261 520.0 0.168 0.0343 6 3 amp 1;3 0.1673 0.2394 0.6989 4 -0.33 69.86 -0.0114 0.0695 somatic
71 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr15 73302604 80979346 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1800 201 0.1348 0.1382 0.535 385.0 0.2066 0.0347 6 2 amp 3 0.0576 0.2394 0.2405 4 -0.33 14.84 -0.0225 -0.0038 somatic
72 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr15 80979348 87869336 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 944 105 0.4155 0.4341 0.5372 677.0 0.2287 0.0465 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 31.87 0.0179 -0.0425 somatic
73 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr15 87869336 88913342 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1888 133 -0.0786 -0.0527 0.5189 11565.0 0.0621 0.0041 1 0 del 2;4 0.0721 0.2394 0.3011 4 -0.33 8.81 -0.0256 -0.0066 somatic
74 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr15 89116268 101922943 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1990 308 0.3488 0.3684 0.5236 535.0 0.1405 0.024 6 3 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 38.71 -0.002 0.06 somatic
75 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr16 47432 3745026 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2994 275 -0.117 -0.1411 0.5339 363.0 0.1492 0.0342 1 0 del 2;3 0.1018 0.2394 0.4252 4 -0.33 16.59 -0.0416 -0.0134 somatic
76 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr16 3745230 11350790 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1391 211 0.1023 0.0925 0.5269 503.0 0.1099 0.0164 6 2 amp 2 0.0442 0.2394 0.1847 4 -0.33 10.0 -0.0199 -0.0092 somatic
77 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr16 11549630 18926055 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1094 162 0.4429 0.4474 0.5352 660.2 0.1175 0.0179 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 36.57 0.0453 -0.051 somatic
78 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr16 18984036 31426131 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 3645 344 0.1906 0.1915 0.529 609.0 0.1464 0.0272 5 2 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 28.93 -0.0144 -0.0046 somatic
79 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr16 31427755 81101245 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 5879 451 0.3054 0.313 0.5363 547.0 0.1706 0.0362 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 58.51 0.0056 -0.0139 somatic
80 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr16 81101209 90075935 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2304 381 -0.0351 -0.0413 0.5284 575.0 0.1121 0.021 1 0 del 2;4 0.0721 0.2394 0.3011 4 -0.33 6.41 0.0179 0.0056 somatic
81 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 137555 10392681 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4536 891 0.1973 0.1932 0.5314 599.0 0.1573 0.0296 5 2 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 34.05 -0.0077 0.0048 somatic
82 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 10392791 13017155 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 740 130 0.3238 0.3606 0.5307 859.2 0.1545 0.021 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 22.1 0.024 -0.0295 somatic
83 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 13017699 16420239 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 422 35 0.6743 0.7009 0.5793 842.0 0.1718 0.0436 7 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 34.75 -0.0024 0.1424 somatic
84 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 16422545 40629865 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 5878 772 0.3167 0.3263 0.5464 566.0 0.189 0.0529 5 2 amp 1;3 0.1673 0.2394 0.6989 4 -0.33 61.61 -0.0064 0.0186 somatic
85 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 40629865 41465964 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 471 168 0.7054 0.7591 0.559 1298.0 0.1777 0.0334 7 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 38.92 0.0287 0.0649 somatic
86 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 41466074 50508772 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4086 384 0.2441 0.2489 0.5423 605.0 0.1852 0.0431 6 2 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 39.56 0.0165 -0.0091 somatic
87 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 50516513 50692273 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 284 48 -0.0668 -0.05 0.5238 877.0 0.1287 0.0206 1 0 del 2;4 0.0721 0.2394 0.3011 4 -0.33 3.15 -0.0138 -0.0065 somatic
88 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 50695987 73338814 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4156 296 0.4177 0.4236 0.5334 665.0 0.1523 0.0309 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 66.98 0.0201 -0.0581 somatic
89 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr17 73338836 83094575 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 3824 735 0.1886 0.1843 0.5345 499.5 0.1949 0.0425 5 2 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 30.16 -0.0164 0.0141 somatic
90 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr18 47389 54942849 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 5185 673 0.4273 0.4511 0.5324 675.0 0.1541 0.029 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 76.69 0.0297 -0.0619 somatic
91 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr18 55228232 62979423 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 820 136 0.6135 0.6396 0.5689 826.0 0.331 0.1277 6 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 44.47 0.049 -0.0771 somatic
92 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr18 63090951 80247372 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1284 179 0.2347 0.2521 0.5268 704.0 0.1502 0.039 5 2 amp 1 0.1097 0.2394 0.4584 4 -0.33 21.09 0.0148 -0.0171 somatic
93 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr19 110952 8936448 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4988 999 -0.0451 -0.0559 0.5393 395.0 0.1325 0.0245 1 0 del 2;3 0.1018 0.2394 0.4252 4 -0.33 13.94 0.0303 0.01 somatic
94 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr19 8936448 9127004 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 533 95 -0.7169 -0.6881 0.5205 5705.5 0.0572 0.003 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 41.09 -0.3221 0.0715 somatic
95 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr19 9155951 43418397 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 10766 1205 0.071 0.0541 0.5354 467.0 0.1747 0.0343 3 1 amp 1 0.1097 0.2394 0.4584 4 -0.33 21.46 -0.0061 0.0008 somatic
96 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr19 43461351 48144020 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2136 344 0.1861 0.1618 0.5286 454.0 0.135 0.0252 5 2 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 21.78 0.0121 0.0013 somatic
97 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr19 48149739 50007826 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1355 249 0.3952 0.3783 0.5502 455.0 0.2512 0.0641 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 36.94 -0.0024 0.0031 somatic
98 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr19 50009215 56225048 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2716 512 0.0014 0.0106 0.5473 467.0 0.2131 0.0506 2 0 cn-loh 2;4 0.0721 0.2394 0.3011 4 -0.33 10.71 0.0014 0.0084 somatic
99 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr19 56228235 58571441 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1003 170 0.2139 0.2368 0.5349 715.0 0.1658 0.0298 5 2 amp 1 0.1097 0.2394 0.4584 4 -0.33 17.37 -0.006 0.0157 somatic
100 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 41522 27329556 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 3380 476 0.3562 0.3594 0.5522 643.0 0.2457 0.067 5 2 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 52.73 -0.0143 0.0268 somatic
101 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 27333655 29214135 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 710 132 0.5402 0.5635 0.5425 758.0 0.2332 0.0643 6 3 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 36.04 -0.0243 0.1414 somatic
102 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 29220635 29275509 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 140 18 -0.5501 -0.4905 0.5408 7391.0 0.1475 0.0242 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 16.26 -0.1553 0.1543 somatic
103 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 29293319 31266709 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 188 63 0.1875 0.2227 0.5328 415.8 0.2355 0.055 5 2 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 6.76 -0.0175 0.0039 somatic
104 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 31335920 43590985 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1661 151 0.5563 0.577 0.5315 878.0 0.1855 0.0385 6 3 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 56.33 -0.0082 0.0992 somatic
105 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 43591909 47839826 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1052 119 0.2889 0.3238 0.5262 659.0 0.1375 0.0184 5 2 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 23.36 0.0182 -0.0404 somatic
106 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 47856991 70453332 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2513 303 0.4652 0.5087 0.5284 713.0 0.1532 0.0318 6 3 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 57.99 -0.0103 0.0838 somatic
107 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 70456292 84870330 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1755 149 0.2602 0.2836 0.5241 636.5 0.1405 0.0277 5 2 amp 1 0.1097 0.2394 0.4584 4 -0.33 27.13 0.0403 -0.0295 somatic
108 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 84870338 88067992 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 680 101 0.5819 0.616 0.5444 733.5 0.2761 0.0897 6 3 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 37.9 0.0174 0.1486 somatic
109 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 88084297 101466872 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2271 404 0.2538 0.2778 0.5516 1265.0 0.1416 0.027 6 2 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 32.11 -0.0136 0.0151 somatic
110 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 101698062 112663043 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1681 185 0.5647 0.5985 0.5643 1052.0 0.1577 0.0342 6 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 58.23 0.0002 -0.0926 somatic
111 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 112721457 144401360 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 3161 416 0.2705 0.3042 0.5395 655.0 0.1767 0.0404 5 2 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 38.55 -0.0002 0.013 somatic
112 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 144403874 216859725 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 10191 950 0.5228 0.554 0.5439 749.0 0.2163 0.0544 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 131.58 0.0801 -0.0297 somatic
113 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 216859864 222304385 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1486 194 0.2611 0.2469 0.5331 643.0 0.1885 0.0388 5 2 amp 2;3;4 0.1297 0.2394 0.5416 4 -0.33 25.33 0.0047 -0.0075 somatic
114 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 222424575 232300138 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1366 159 0.474 0.495 0.5262 748.0 0.1043 0.0108 6 3 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 43.53 -0.0015 0.0757 somatic
115 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 232329772 232540153 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 124 2 -0.2771 -0.3169 0.5423 555.0 0.2286 0.0806 0 0 del 1;2;4 0.1818 0.2394 0.7595 4 -0.33 7.65 0.0124 0.0 somatic
116 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 232540342 240046063 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1307 197 0.2448 0.2572 0.545 562.5 0.1879 0.0357 6 2 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 22.85 0.0172 0.0006 somatic
117 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr2 240126562 241873273 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 793 146 0.0223 -0.0087 0.5345 470.0 0.18 0.0342 4 0 amp 4 0.0279 0.2394 0.1164 4 -0.33 4.1 -0.0174 -0.0071 somatic
118 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr20 87677 3760110 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1009 195 0.2871 0.3053 0.5384 476.0 0.2257 0.0571 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 23.17 -0.0127 -0.0079 somatic
119 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr20 3778198 21397403 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1690 287 0.4872 0.5171 0.5393 667.5 0.2102 0.0479 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 50.09 0.0445 -0.05 somatic
120 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr20 21511925 32433962 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 806 161 0.2129 0.2528 0.5304 552.8 0.1889 0.0434 5 2 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 15.38 0.0079 -0.0006 somatic
121 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr20 32434399 33309810 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 439 56 -0.185 -0.167 0.5144 337.0 0.1451 0.0238 0 0 del 2;3;4 0.1297 0.2394 0.5416 4 -0.33 9.61 0.0154 0.0142 somatic
122 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr20 33359022 60071173 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 5282 573 0.3197 0.3183 0.5231 676.5 0.119 0.0189 4 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 57.78 0.01 0.0618 somatic
123 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr20 61252480 64273595 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1186 245 -0.1065 -0.1187 0.5411 401.5 0.2104 0.0485 1 0 del 2;3;4 0.1297 0.2394 0.5416 4 -0.33 10.92 -0.0098 -0.0139 somatic
124 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr21 5117108 21537990 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 462 66 0.2398 0.2979 0.5883 1000.0 0.1821 0.0434 5 1 amp 2;3;4 0.1297 0.2394 0.5416 4 -0.33 15.26 -0.0166 0.0031 somatic
125 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr21 25585643 41344543 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2190 313 0.5714 0.5922 0.5403 797.0 0.23 0.0637 6 3 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 66.69 0.0069 0.1333 somatic
126 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr21 41345620 46664423 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2009 487 0.0858 0.1015 0.5237 502.0 0.1315 0.0221 6 2 amp 4 0.0279 0.2394 0.1164 4 -0.33 10.36 0.0075 0.0065 somatic
127 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 15528158 22647784 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1729 282 0.137 0.127 0.5552 567.0 0.1363 0.0228 4 1 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 17.18 -0.0029 0.0029 somatic
128 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 22668547 23293680 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 603 54 -0.2405 -0.1256 0.5583 3811.0 0.2532 0.0692 1 0 del 1;2;3 0.2115 0.2394 0.8836 4 -0.33 15.48 -0.0792 -0.0163 somatic
129 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 23293680 23838458 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 290 77 0.0353 0.094 0.5552 7366.8 0.2551 0.0709 3 0 amp 2;4 0.0721 0.2394 0.3011 4 -0.33 5.96 -0.0158 0.0029 somatic
130 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 23838540 29042601 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 931 114 0.4244 0.4264 0.5443 571.0 0.2248 0.0617 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 32.45 0.0268 -0.0167 somatic
131 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 29043243 31140387 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 998 141 0.1692 0.1812 0.5215 680.0 0.1023 0.0165 5 2 amp 2;4 0.0721 0.2394 0.3011 4 -0.33 13.41 0.0211 -0.0096 somatic
132 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 31187029 36526179 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 823 114 0.6289 0.6228 0.5602 949.0 0.2953 0.102 7 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 45.29 -0.0478 0.066 somatic
133 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 36564358 37491233 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 301 76 -0.1884 -0.1785 0.5266 438.0 0.1174 0.0207 0 0 del 2;3;4 0.1297 0.2394 0.5416 4 -0.33 8.31 0.012 0.0684 somatic
134 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 37491308 42880651 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2066 237 0.2152 0.2009 0.5313 555.0 0.1528 0.0278 5 2 amp 1 0.1097 0.2394 0.4584 4 -0.33 24.64 -0.0047 -0.0028 somatic
135 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr22 42882178 50782316 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1664 350 0.0376 0.031 0.5373 457.0 0.2185 0.0483 4 0 amp 4 0.0279 0.2394 0.1164 4 -0.33 7.53 -0.0021 0.0036 somatic
136 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr3 319726 46021261 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 6754 788 0.3992 0.4013 0.5509 627.5 0.1937 0.0469 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 82.7 0.0016 0.0115 somatic
137 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr3 46021332 52533587 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 3674 113 0.1025 0.0906 0.5422 640.5 0.239 0.0584 4 1 amp 2;4 0.0721 0.2394 0.3011 4 -0.33 16.05 0.0021 0.003 somatic
138 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr3 52533651 183323411 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 14135 1902 0.4553 0.4834 0.5352 771.0 0.176 0.0358 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 135.04 0.0126 -0.0643 somatic
139 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr3 183338769 184581627 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 710 49 0.214 0.2243 0.531 623.0 0.1798 0.0328 5 2 amp 1 0.1097 0.2394 0.4584 4 -0.33 14.28 -0.0059 -0.0021 somatic
140 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr3 184710897 198169878 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2403 306 0.3988 0.4244 0.5284 689.0 0.1697 0.042 5 2 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 48.67 0.0283 -0.068 somatic
141 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr4 53399 1982223 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 889 84 -0.1106 -0.1394 0.5448 404.0 0.1976 0.0531 1 0 del 1;4 0.1376 0.2394 0.5748 4 -0.33 9.09 -0.0078 -0.0081 somatic
142 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr4 1983283 3223588 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 441 32 0.2352 0.2273 0.5573 379.0 0.2264 0.0526 6 2 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 12.68 -0.0322 0.0197 somatic
143 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr4 3223956 9826656 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 918 265 -0.0107 -0.0121 0.5458 360.0 0.2317 0.0485 2 0 cn-loh 2;4 0.0721 0.2394 0.3011 4 -0.33 7.18 -0.0107 -0.0028 somatic
144 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr4 9834880 190027226 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 15953 2045 0.4668 0.508 0.535 730.0 0.1911 0.0421 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 146.98 0.0241 -0.0659 somatic
145 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 92183 473420 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 201 9 0.1283 0.1588 0.5178 688.5 0.1119 0.0112 5 2 amp 3 0.0576 0.2394 0.2405 4 -0.33 4.53 0.0088 -0.0122 somatic
146 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 474881 1882697 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 423 81 -0.3345 -0.405 0.5383 326.0 0.1393 0.024 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 17.32 0.0603 0.1093 somatic
147 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 2747526 131710674 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 10883 1259 0.4648 0.501 0.5316 735.0 0.1799 0.0349 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 120.68 0.0221 -0.0795 somatic
148 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 131716506 139887539 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1830 100 0.3593 0.3658 0.5406 546.0 0.1952 0.0382 5 2 amp 1;2;4 0.1818 0.2394 0.7595 4 -0.33 38.31 0.0114 -0.0145 somatic
149 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 140042375 141478708 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1131 76 0.7714 0.861 0.573 1542.0 0.3458 0.1327 8 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 64.73 -0.0095 -0.0067 somatic
150 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 141485116 150047811 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1382 142 0.58 0.5861 0.5737 881.0 0.2717 0.0823 6 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 54.37 0.0155 -0.0566 somatic
151 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 150048510 150407362 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 360 44 -0.1097 -0.0811 0.5256 490.5 0.1114 0.0191 1 0 del 3;4 0.0855 0.2394 0.3569 4 -0.33 5.34 -0.0467 -0.0229 somatic
152 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 150412588 176532520 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2518 374 0.413 0.4249 0.546 628.0 0.2187 0.0507 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 52.18 0.0154 -0.0083 somatic
153 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 176565314 177098196 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 259 34 -0.2651 -0.2189 0.548 545.9 0.193 0.0405 1 0 del 1;3;4 0.1952 0.2394 0.8153 4 -0.33 10.96 -0.1169 -0.0587 somatic
154 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 177098593 180591500 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1095 111 0.3455 0.3506 0.5502 393.0 0.2662 0.0858 5 2 amp 1;2;4 0.1818 0.2394 0.7595 4 -0.33 28.83 -0.0024 0.0181 somatic
155 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 180601488 180649676 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 119 14 -0.6762 -0.6362 0.552 1558.0 0.2141 0.0474 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 18.42 -0.2814 0.1885 somatic
156 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr5 180739122 181367710 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 147 24 0.4747 0.4723 0.5435 635.7 0.2729 0.0982 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 14.43 0.032 -0.0338 somatic
157 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr6 304553 408129 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 71 6 -0.1899 -0.1794 0.5901 976.0 0.4455 0.2525 1 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 4.73 -0.006 0.0652 somatic
158 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr6 408129 15615364 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1424 179 0.4481 0.4703 0.5319 595.0 0.194 0.0478 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 42.1 0.0505 -0.0659 somatic
159 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr6 15615312 29659447 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1944 308 0.631 0.6902 0.541 1196.0 0.2166 0.0579 7 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 69.39 -0.0457 -0.0088 somatic
160 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr6 29659477 31505871 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 869 439 0.4602 0.4788 0.5489 1460.8 0.1381 0.0234 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 35.5 0.0175 -0.0013 somatic
161 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr6 31506090 43655684 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4914 655 0.3272 0.3226 0.5298 700.5 0.1423 0.0269 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 57.3 0.0274 -0.036 somatic
162 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr6 43656548 44392840 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 357 20 0.1291 0.0898 0.5262 636.5 0.2713 0.0889 6 2 amp 2 0.0442 0.2394 0.1847 4 -0.33 6.13 0.0069 -0.008 somatic
163 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr6 44393421 170584636 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 14824 1751 0.4376 0.4754 0.5272 792.8 0.1308 0.0238 6 3 amp 1;2;4 0.1818 0.2394 0.7595 4 -0.33 132.49 -0.0099 0.0806 somatic
164 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 193154 2844198 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 622 198 -0.0127 0.001 0.5413 367.0 0.2007 0.0373 2 0 cn-loh 3 0.0576 0.2394 0.2405 4 -0.33 5.45 -0.0127 0.0086 somatic
165 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 2906132 2946003 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 148 8 -0.6623 -0.6207 0.5176 1520.0 0.1622 0.0261 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 19.98 -0.2675 0.05 somatic
166 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 2947539 4925551 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 209 73 0.0281 0.0569 0.5357 404.8 0.1861 0.0352 4 0 amp 4 0.0279 0.2394 0.1164 4 -0.33 2.91 -0.0116 -0.0052 somatic
167 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 4958940 7606096 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 787 129 0.3023 0.3033 0.5323 641.0 0.1383 0.0224 5 2 amp 1;2 0.154 0.2394 0.6431 4 -0.33 21.3 0.0025 -0.0274 somatic
168 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 7606947 14178210 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 992 250 0.6558 0.6551 0.5421 14380.0 0.1477 0.0257 7 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 51.81 -0.0209 0.0121 somatic
169 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 14338505 43456482 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2799 420 0.4975 0.5154 0.5418 634.0 0.2381 0.068 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 65.82 0.0548 -0.0407 somatic
170 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 43463615 55168976 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1395 207 0.2485 0.269 0.5498 616.0 0.1759 0.0396 6 2 amp 2;3 0.1018 0.2394 0.4252 4 -0.33 24.19 -0.0189 -0.0018 somatic
171 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 55168976 55208792 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 304 64 0.1309 0.1452 0.5359 19671.5 0.1521 0.0264 3 1 amp 1;2 0.154 0.2394 0.6431 4 -0.33 6.61 0.0239 -0.005 somatic
172 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 55208792 100721746 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 5180 526 0.3858 0.4102 0.5411 636.5 0.1983 0.0472 5 2 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 69.48 0.0153 -0.0181 somatic
173 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 100721936 102473714 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 864 144 -0.1231 -0.107 0.57 773.0 0.1371 0.0235 1 0 del 1;2;3 0.2115 0.2394 0.8836 4 -0.33 12.99 0.0382 0.0155 somatic
174 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 102478777 148808596 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 6419 646 0.4384 0.4599 0.5329 735.0 0.1701 0.0365 5 2 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 87.44 0.0408 -0.0586 somatic
175 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 148809020 151218243 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1071 158 0.1479 0.1153 0.5383 505.0 0.1974 0.0399 6 2 amp 3 0.0576 0.2394 0.2405 4 -0.33 12.85 -0.0094 0.0146 somatic
176 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr7 151218545 159144810 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1207 188 0.4479 0.4686 0.5369 700.5 0.1571 0.031 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 38.9 0.0052 -0.0589 somatic
177 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 166085 23004495 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2176 486 0.2623 0.2623 0.5407 637.0 0.2122 0.0515 5 2 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 31.63 -0.0084 0.0174 somatic
178 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 23004507 37778122 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2941 380 0.4069 0.4396 0.5217 2247.0 0.0798 0.0106 6 3 amp 1;3 0.1673 0.2394 0.6989 4 -0.33 54.87 -0.0096 0.07 somatic
179 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 37796849 38057142 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 174 22 0.0547 0.0524 0.5252 1037.5 0.1282 0.0159 5 1 amp 4 0.0279 0.2394 0.1164 4 -0.33 2.1 -0.0044 -0.0042 somatic
180 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 38057139 38404509 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 299 0 0.7223 0.7242 7 0 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 30.96 0.0456 0.0 somatic
181 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 38407321 38468648 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 360 0 -0.0669 -0.0212 0 0 del 2 0.0442 0.2394 0.1847 4 -0.33 3.15 -0.0017 0.0 somatic
182 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 38468648 56441979 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2009 173 0.3461 0.3697 0.5214 728.0 0.1019 0.0164 6 3 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 38.52 -0.0047 0.0561 somatic
183 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 56445824 127733056 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 6260 549 0.4762 0.5275 0.5305 806.0 0.1583 0.0338 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 93.65 0.0335 -0.0826 somatic
184 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 127734016 127743463 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 203 2 -0.258 -0.2498 0.5524 31323.0 0.1231 0.0143 0 0 del 1;3 0.1673 0.2394 0.6989 4 -0.33 9.11 0.0062 0.0 somatic
185 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 127743403 137824131 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 650 125 0.3301 0.3663 0.5429 535.8 0.2587 0.0727 5 2 amp 1;3 0.1673 0.2394 0.6989 4 -0.33 21.4 0.007 0.0036 somatic
186 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr8 137824052 145054212 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2137 371 0.0103 0.0093 0.5321 519.5 0.1519 0.0276 2 0 cn-loh 2 0.0442 0.2394 0.1847 4 -0.33 5.7 0.0103 0.0051 somatic
187 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 17350 5023955 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 653 98 0.5228 0.5856 0.5199 795.0 0.0789 0.0072 6 3 amp 1;2;3 0.2115 0.2394 0.8836 4 -0.33 33.16 0.0138 0.0513 somatic
188 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 5029725 17795662 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1435 158 0.282 0.3568 0.5256 949.0 0.129 0.0219 5 2 amp 2;3;4 0.1297 0.2394 0.5416 4 -0.33 26.65 0.0256 -0.0321 somatic
189 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 17795672 26908057 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 797 131 0.6246 0.6663 0.5362 1065.5 0.1989 0.0564 7 3 high-amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 43.92 -0.0521 -0.0294 somatic
190 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 26910299 36677347 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1776 193 0.3386 0.3469 0.5406 620.0 0.1981 0.0462 5 2 amp 1;3 0.1673 0.2394 0.6989 4 -0.33 35.82 0.0155 -0.0032 somatic
191 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 36828269 36840695 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 67 0 -0.8059 -0.7291 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 16.35 -0.4111 0.0 somatic
192 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 36843340 37746558 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 320 52 -0.0083 -0.0346 0.5443 605.5 0.2157 0.0428 2 0 cn-loh 2;4 0.0721 0.2394 0.3011 4 -0.33 3.26 -0.0083 0.0008 somatic
193 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 37746646 84280083 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2144 257 0.4665 0.5097 0.5466 733.0 0.1574 0.0314 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 54.11 0.0238 -0.0191 somatic
194 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 84280012 95172188 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2226 214 0.2876 0.3054 0.5227 605.0 0.1251 0.0214 5 2 amp 2;3;4 0.1297 0.2394 0.5416 4 -0.33 33.74 0.0312 -0.0502 somatic
195 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 95190552 123158181 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 4126 448 0.5294 0.5494 0.5549 755.0 0.2209 0.0606 5 2 amp 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 85.23 0.0867 0.0148 somatic
196 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 123159092 130299307 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1959 193 0.2733 0.254 0.5351 440.0 0.1982 0.0473 5 2 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 30.31 0.0026 -0.0116 somatic
197 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 130302827 131117959 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 396 78 -0.1519 -0.0952 0.5471 212.5 0.2526 0.0653 1 0 del 1;4 0.1376 0.2394 0.5748 4 -0.33 8.34 -0.0491 -0.0138 somatic
198 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 131120218 133376576 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 909 130 0.186 0.2187 0.5193 682.0 0.1048 0.0167 5 2 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 14.0 0.012 -0.0291 somatic
199 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 133379027 136493954 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1000 266 -0.1411 -0.1565 0.5243 373.0 0.104 0.0168 0 0 del 3;4 0.0855 0.2394 0.3569 4 -0.33 11.42 -0.0122 0.056 somatic
200 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 136494376 136497496 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 83 4 -1.2932 -1.3347 0.5155 12886.5 0.0339 0.0006 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 29.21 -0.8984 0.055 somatic
201 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 136497398 136673958 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 317 44 -0.691 -0.6194 0.5282 3306.5 0.099 0.0119 0 0 del 1;2;3;4 0.2394 0.2394 1.0 4 -0.33 30.57 -0.2962 0.099 somatic
202 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chr9 136674710 138231128 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1017 135 -0.0068 -0.0161 0.5335 483.5 0.177 0.0274 2 0 cn-loh 2 0.0442 0.2394 0.1847 4 -0.33 3.56 -0.0068 0.0094 somatic
203 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 2853959 24539242 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2125 0 -0.4086 -0.3843 6 0 high-amp 2;3 0.1018 0.2394 0.4252 4 -0.33 46.69 -0.676 0.0 somatic
204 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 24562054 40098496 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1075 2 -0.6427 -0.5872 0.649 245.0 0.3054 0.0 3 0 amp 1;4 0.1376 0.2394 0.5748 4 -0.33 52.24 -0.7387 0.0 somatic
205 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 40103750 48131434 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 1162 0 -0.2709 -0.2276 6 0 high-amp 2;3;4 0.1297 0.2394 0.5416 4 -0.33 22.89 -0.6036 0.0 somatic
206 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 48132228 50424396 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 927 2 -0.7876 -0.7853 0.6336 701.5 0.1425 0.0 2 0 amp 1;2 0.154 0.2394 0.6431 4 -0.33 59.45 -0.7876 0.0 somatic
207 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 50470041 71100812 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 2477 29 -0.636 -0.6037 0.6257 1162.0 0.2456 0.0865 6 0 high-amp 3 0.0576 0.2394 0.2405 4 -0.33 78.89 -0.7933 0.1781 somatic
208 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 71100861 71253292 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 351 0 -1.0097 -1.0107 1 0 neutral 1 0.1097 0.2394 0.4584 4 -0.33 46.89 -0.9283 0.0 somatic
209 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 71254025 148987577 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 6690 18 -0.5897 -0.5588 0.5896 1478.0 0.0922 0.0047 4 0 amp 1 0.1097 0.2394 0.4584 4 -0.33 119.65 -0.7399 -0.0593 somatic
210 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 148991210 151405064 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 246 1 -0.1261 -0.1277 0.5024 1642.0 0.0036 6 0 high-amp 1;3 0.1673 0.2394 0.6989 4 -0.33 4.9 -0.5426 0.0 somatic
211 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 151601503 153919311 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 696 0 -0.9842 -0.9913 1 0 neutral 1 0.1097 0.2394 0.4584 4 -0.33 64.37 -0.9028 0.0 somatic
212 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 153919566 154653344 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 522 0 -0.6755 -0.6774 4 0 amp 3;4 0.0855 0.2394 0.3569 4 -0.33 38.26 -0.7938 0.0 somatic
213 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrX 154653402 155545278 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 242 0 -0.3643 -0.3216 5 0 high-amp 1;4 0.1376 0.2394 0.5748 4 -0.33 14.05 -0.635 0.0 somatic
214 1136_57Z-T1-TDNA-1_B23MF2JLT4_1_vs_1136_57Z-N1-BDNA-1_A23NLN3LT4_1 chrY 2787153 20781043 1136_57Z-T1-TDNA-1_B23MF2JLT4_1 1136_57Z-N1-BDNA-1_A23NLN3LT4_1 260 0 0.1311 0.1127 3 0 amp 1;3;4 0.1952 0.2394 0.8153 4 -0.33 5.24 -0.0033 0.0 somatic
215 rows