Processes


NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET	1
CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT	4936
CRAM_FILTER_LOW_READS:WRITE_PURGE_REPORT
CRAM_QC_RECAL:SAMTOOLS_STATS
CRAM_QC_RECAL:MOSDEPTH
BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
BAM_NGSCHECKMATE:NGSCHECKMATE_NCM
BAM_VARIANT_CALLING_SOMATIC_ALL:SAMTOOLS_CONVERT_CRAM_TO_BAM
SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS	5348	661
SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS	5348	739
SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE	5348
SOMATIC_CNV_CALLING:SOMA_CNV_CALL	2674	8
SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER	2674
SOMATIC_CNV_CALLING:SOMA_CNV_BGZIP_TABIX	2674
SOMATIC_CNV_CALLING:BGZIP_TABIX_TUMOR_ONLY	2674
SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY	2674
VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS
VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_COUNT
VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_QUAL
VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_SUMMARY
SAREK:AGGREGATE_VARIANT_QC	1
SAREK:VARIANT_QC_TO_CSV	1