|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
58s |
57s |
0s |
0s |
0 bytes |
188% |
3.0 MB |
2.9 MB |
0 bytes |
2.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
3s |
1s |
0s |
1s |
6.0 MB |
101% |
3.4 MB |
939.3 KB |
476.0 KB |
480.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_01F-T1-TDNA-1_A23TNVYLT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1)
|
4s |
2s |
0s |
1s |
6.2 MB |
113% |
5.1 MB |
784.0 KB |
0 bytes |
792.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_01F-T1-TDNA-1_B23NMJMLT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1)
|
4s |
2s |
0s |
1s |
6.3 MB |
93% |
5.1 MB |
784.0 KB |
0 bytes |
792.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_01F-T1-TDNA-1_B23VCL7LT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1)
|
2s |
1s |
0s |
0s |
6.3 MB |
108% |
5.1 MB |
784.0 KB |
0 bytes |
792.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_01S-T1-TDNA-1_B23KFCWLT4_1_vs_1029_01S-N1-BDNA-1_B23KGCJLT4_1)
|
4s |
2s |
0s |
1s |
6.3 MB |
104% |
5.1 MB |
786.8 KB |
0 bytes |
796.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_032-T1-TDNA-1_23FC2GLT4_s01_vs_1029_032-N1-BDNA-1_2375WFLT3_s01)
|
3s |
1s |
0s |
1s |
6.4 MB |
104% |
5.0 MB |
778.6 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_032-T1-TDNA-1_23K7YCLT4_1_vs_1029_032-N1-BDNA-1_235YY7LT3_1)
|
3s |
1s |
0s |
1s |
6.3 MB |
92% |
5.0 MB |
780.3 KB |
0 bytes |
788.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_05O-T1-TDNA-1_23FC2GLT4_s02_vs_1029_05O-N1-BDNA-1_2375WFLT3_s02)
|
4s |
2s |
0s |
1s |
6.4 MB |
94% |
5.0 MB |
779.3 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1)
|
3s |
2s |
0s |
0s |
6.2 MB |
96% |
5.1 MB |
778.8 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0DT-T1-TDNA-1_23FC2GLT4_s03_vs_1029_0DT-N1-BDNA-1_2375WFLT3_s03)
|
3s |
2s |
0s |
0s |
6.4 MB |
96% |
5.1 MB |
779.2 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1)
|
4s |
3s |
0s |
0s |
6.4 MB |
102% |
5.1 MB |
779.1 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0DT-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1)
|
4s |
2s |
0s |
1s |
6.3 MB |
102% |
5.1 MB |
779.1 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0DT-T1-TDNA-1_B23NN7CLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1)
|
2s |
1s |
0s |
0s |
6.4 MB |
111% |
5.0 MB |
779.1 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0H2-T1-TDNA-1_B23MHVMLT4_1_vs_1029_0H2-N1-BDNA-1_A23MHW3LT4_1)
|
3s |
1s |
0s |
1s |
6.3 MB |
94% |
5.1 MB |
784.3 KB |
0 bytes |
792.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0I-T1-TDNA-1_A23KCGYLT4_1_vs_1029_0I-N1-BDNA-1_B23KGCJLT4_1)
|
3s |
1s |
0s |
1s |
6.4 MB |
95% |
5.1 MB |
784.3 KB |
0 bytes |
792.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0NX-T1-TDNA-1_23FC2GLT4_s04_vs_1029_0NX-N1-BDNA-1_2375WFLT3_s04)
|
3s |
2s |
0s |
0s |
6.4 MB |
106% |
5.0 MB |
779.2 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0NX-T1-TDNA-1_23K7YCLT4_1_vs_1029_0NX-N1-BDNA-1_235YY7LT3_1)
|
4s |
3s |
0s |
0s |
6.3 MB |
102% |
5.1 MB |
779.5 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0NX-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0NX-N1-BDNA-1_235YY7LT3_1)
|
3s |
1s |
0s |
1s |
6.4 MB |
98% |
5.0 MB |
779.5 KB |
0 bytes |
784.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0NX-T1-TDNA-1_B23NN7CLT4_1_vs_1029_0NX-N1-BDNA-1_235YY7LT3_1)
|
3s |
1s |
0s |
1s |
6.3 MB |
112% |
5.0 MB |
779.5 KB |
0 bytes |
784.0 KB |
1 |