succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 58s 57s 0s 0s 0 bytes 188% 3.0 MB 2.9 MB 0 bytes 2.9 MB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 3s 1s 0s 1s 6.0 MB 101% 3.4 MB 939.3 KB 476.0 KB 480.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_01F-T1-TDNA-1_A23TNVYLT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1) 4s 2s 0s 1s 6.2 MB 113% 5.1 MB 784.0 KB 0 bytes 792.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_01F-T1-TDNA-1_B23NMJMLT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1) 4s 2s 0s 1s 6.3 MB 93% 5.1 MB 784.0 KB 0 bytes 792.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_01F-T1-TDNA-1_B23VCL7LT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1) 2s 1s 0s 0s 6.3 MB 108% 5.1 MB 784.0 KB 0 bytes 792.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_01S-T1-TDNA-1_B23KFCWLT4_1_vs_1029_01S-N1-BDNA-1_B23KGCJLT4_1) 4s 2s 0s 1s 6.3 MB 104% 5.1 MB 786.8 KB 0 bytes 796.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_032-T1-TDNA-1_23FC2GLT4_s01_vs_1029_032-N1-BDNA-1_2375WFLT3_s01) 3s 1s 0s 1s 6.4 MB 104% 5.0 MB 778.6 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_032-T1-TDNA-1_23K7YCLT4_1_vs_1029_032-N1-BDNA-1_235YY7LT3_1) 3s 1s 0s 1s 6.3 MB 92% 5.0 MB 780.3 KB 0 bytes 788.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_05O-T1-TDNA-1_23FC2GLT4_s02_vs_1029_05O-N1-BDNA-1_2375WFLT3_s02) 4s 2s 0s 1s 6.4 MB 94% 5.0 MB 779.3 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1) 3s 2s 0s 0s 6.2 MB 96% 5.1 MB 778.8 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0DT-T1-TDNA-1_23FC2GLT4_s03_vs_1029_0DT-N1-BDNA-1_2375WFLT3_s03) 3s 2s 0s 0s 6.4 MB 96% 5.1 MB 779.2 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1) 4s 3s 0s 0s 6.4 MB 102% 5.1 MB 779.1 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0DT-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1) 4s 2s 0s 1s 6.3 MB 102% 5.1 MB 779.1 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0DT-T1-TDNA-1_B23NN7CLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1) 2s 1s 0s 0s 6.4 MB 111% 5.0 MB 779.1 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0H2-T1-TDNA-1_B23MHVMLT4_1_vs_1029_0H2-N1-BDNA-1_A23MHW3LT4_1) 3s 1s 0s 1s 6.3 MB 94% 5.1 MB 784.3 KB 0 bytes 792.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0I-T1-TDNA-1_A23KCGYLT4_1_vs_1029_0I-N1-BDNA-1_B23KGCJLT4_1) 3s 1s 0s 1s 6.4 MB 95% 5.1 MB 784.3 KB 0 bytes 792.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0NX-T1-TDNA-1_23FC2GLT4_s04_vs_1029_0NX-N1-BDNA-1_2375WFLT3_s04) 3s 2s 0s 0s 6.4 MB 106% 5.0 MB 779.2 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0NX-T1-TDNA-1_23K7YCLT4_1_vs_1029_0NX-N1-BDNA-1_235YY7LT3_1) 4s 3s 0s 0s 6.3 MB 102% 5.1 MB 779.5 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0NX-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0NX-N1-BDNA-1_235YY7LT3_1) 3s 1s 0s 1s 6.4 MB 98% 5.0 MB 779.5 KB 0 bytes 784.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:BGZIP_TABIX_BLOOD_ONLY (1029_0NX-T1-TDNA-1_B23NN7CLT4_1_vs_1029_0NX-N1-BDNA-1_235YY7LT3_1) 3s 1s 0s 1s 6.3 MB 112% 5.0 MB 779.5 KB 0 bytes 784.0 KB 1
34353 items found |