File Info
- Filename
- pos_somatic_028.manta_fusion.fusion_calls.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/20_caller_benchmark_revalidation/hd789-modelD-6a21f937/variant_calling/manta_fusion/pos_somatic_028/pos_somatic_028.manta_fusion.fusion_calls.tsv
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- 11.8 KB
- Workflow Run
- sv-benchmark-hd789-modelD-6a21f937
- Published
- Jun 04, 2026 4:09 PM
Content
View in new tab| specimen | gene1 | gene2 | chr1 | pos1 | chr2 | pos2 | sv_type | event_id | score | filter_call | pon_bp1_count | pon_bp2_count | pon_pair_count | cosmic_hit | somaticscore | manual_vaf | is_pass | is_interchrom | is_paralog_of_higher_score_call |
| pos_somatic_028.manta_fusion | RRAS | . | chr19 | 49640004 | chr19 | 43270404 | DUP | MantaDUP:TANDEM:0:178526:179623:0:0:0 | 0.9999527223595627 | PASS | 0 | 0 | 0 | 0 | 84.0 | 0.0880056777856636 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ADAMTS18 | VAPA | chr16 | 77342077 | chr18 | 9931832 | BND | MantaBND:0:152279:152280:0:0:0:1 | 0.9997495222592786 | PASS | 0 | 0 | 0 | 0 | 54.0 | 0.0583232077764277 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | BCL2 | . | chr18 | 63314872 | chr18 | 64623921 | DEL | MantaDEL:0:4430:172395:0:0:0 | 0.9997223978710233 | PASS | 2 | 0 | 0 | 0 | 818.0 | 0.1447477253928867 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ENSG00000241489 | EOLA1 | chrX | 149524096 | chrX | 149546746 | DEL | MantaDEL:0:199301:199302:0:0:0 | 0.999664335736145 | PASS | 0 | 0 | 0 | 0 | 79.0 | 0.0512 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ROS1 | SLC34A2 | chr6 | 117337163 | chr4 | 25665007 | BND | MantaBND:0:47851:47852:1:5:0:0 | 0.9993701817330233 | PASS | 2 | 89 | 0 | 0 | 956.0 | 0.03312003375290064 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | CCDC6 | RET | chr10 | 59878857 | chr10 | 43114500 | BND | MantaBND:0:65920:108259:0:0:0:0 | 0.9992309629991863 | PASS | 0 | 6 | 0 | 1 | 165.0 | 0.023273789075918927 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | HES7 | PLSCR3 | chr17 | 8121596 | chr17 | 7394345 | DEL | MantaDEL:0:160933:160934:0:0:0 | 0.9990461833076222 | PASS | 0 | 0 | 0 | 0 | 124.0 | 0.0834710743801653 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | CLPSL1 | FKBP5 | chr6 | 35787989 | chr6 | 35701329 | DUP | MantaDUP:TANDEM:0:70240:70242:0:0:0 | 0.9987650528510387 | PASS | 0 | 0 | 0 | 0 | 49.0 | 0.015791551519936834 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ENSG00000249141 | LAPTM4B | chr6 | 166920475 | chr8 | 97775791 | BND | MantaBND:0:10453:78070:0:7:0:0 | 0.9945770898711642 | PASS | 0 | 185 | 0 | 0 | 58.0 | 0.0625 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | ARC | . | chr8 | 142613959 | chr8 | 110392594 | DUP | MantaDUP:TANDEM:0:97056:97411:0:1:0 | 0.994125173736993 | PASS | 0 | 0 | 0 | 0 | 34.0 | 0.0062339567290062336 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | MOSMO | ZBTB17 | chr16 | 22075698 | chr1 | 15970019 | BND | MantaBND:0:1539:1541:0:0:0:0 | 0.9932664431895367 | PASS | 406 | 0 | 0 | 0 | 162.0 | 0.11064318529862174 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | ETFA | TYRO3 | chr15 | 76261435 | chr15 | 41561271 | BND | MantaBND:0:136957:136958:0:0:0:0 | 0.9926779081805744 | PASS | 0 | 825 | 0 | 0 | 149.0 | 0.11942959001782531 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ZSCAN10 | . | chr16 | 3089841 | chr16 | 3082611 | DUP | MantaDUP:TANDEM:0:153666:153667:0:0:0 | 0.9878504897659126 | PASS | 11 | 0 | 0 | 0 | 30.0 | 0.010161386730424387 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | FAM47C | . | chrX | 37009377 | chr8 | 144118681 | BND | MantaBND:0:193564:193565:0:1:0:1 | 0.9855083167533902 | PASS | 186 | 0 | 0 | 0 | 73.0 | 0.025752236378422336 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | CACNA1A | GCDH | chr19 | 13208701 | chr19 | 12891359 | DUP | MantaDUP:TANDEM:0:175342:175343:0:1:0 | 0.983649135641613 | PASS | 15 | 0 | 0 | 0 | 43.0 | 0.007707129094412331 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | EP400 | . | chr12 | 131982269 | chr12 | 132132535 | DEL | MantaDEL:0:135043:135044:0:0:0 | 0.9802114576244354 | PASS | 0 | 0 | 0 | 0 | 40.0 | 0.012651555086979441 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | PABPC1 | PDS5A | chr8 | 100706705 | chr4 | 39973387 | BND | MantaBND:0:48346:48348:1:0:0:0 | 0.9787685248635554 | PASS | 76 | 0 | 0 | 0 | 510.0 | 0.16898638426626325 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | CYP4F22 | ZSWIM4 | chr19 | 15526194 | chr19 | 13830272 | DUP | MantaDUP:TANDEM:0:175468:175469:0:0:0 | 0.9775018436818673 | PASS | 0 | 0 | 0 | 0 | 40.0 | 0.0136275146009085 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | CASP8 | TRAK2 | chr2 | 201236698 | chr2 | 201380664 | DEL | MantaDEL:0:30324:30325:0:2:0 | 0.9760396003846138 | PASS | 0 | 0 | 0 | 0 | 48.0 | 0.035583941605839414 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | TRAM1L1 | . | chr4 | 117085241 | chr4 | 117085991 | DEL | MantaDEL:0:52708:52708:1:0:0 | 0.9743224138147207 | PASS | 0 | 0 | 0 | 0 | 35.0 | 0.01665034280117532 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | CDKN2B | MTAP | chr9 | 22005935 | chr9 | 21899142 | DEL | MantaDEL:0:98996:98997:0:0:0 | 0.9672721331257986 | PASS | 4 | 0 | 0 | 0 | 492.0 | 0.044637321760694355 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ABHD2 | VAPA | chr15 | 89201199 | chr18 | 9954083 | BND | MantaBND:0:152275:152276:0:1:0:0 | 0.9615188431661061 | PASS | 0 | 0 | 0 | 0 | 59.0 | 0.062434963579604576 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | HYDIN | . | chr16 | 70943820 | chr1 | 146771472 | BND | MantaBND:0:9768:9769:0:0:0:0 | 0.9525249335080188 | PASS | 0 | 0 | 0 | 0 | 48.0 | 0.023520485584218515 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | MUC20 | . | chr3 | 195725264 | chr3 | 195619441 | DUP | MantaDUP:TANDEM:0:45846:45850:1:7:0 | 0.9009281304239873 | PASS | 656 | 0 | 0 | 0 | 192.0 | 0.02781456953642384 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | LAPTM4B | . | chr8 | 97816180 | chr1 | 153380076 | BND | MantaBND:0:10450:10451:0:0:0:0 | 0.8648180971834236 | PASS | 10 | 0 | 0 | 0 | 129.0 | 0.08081600627697136 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | FARS2 | RPP40 | chr6 | 5265176 | chr6 | 4998751 | DEL | MantaDEL:0:66636:66637:0:0:0 | 0.8358578104718548 | PASS | 0 | 0 | 0 | 0 | 34.0 | 0.007292616226071103 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ABTB2 | . | chr11 | 34152559 | chr11 | 34150601 | DUP | MantaDUP:TANDEM:0:117307:117308:0:0:0 | 0.8154113375923063 | PASS | 0 | 0 | 0 | 0 | 43.0 | 0.018600531443755536 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | PABPC3 | . | chr13 | 25096629 | chr3 | 155309436 | BND | MantaBND:0:43516:43518:0:0:0:1 | 0.7552615184525913 | PASS | 0 | 0 | 0 | 0 | 73.0 | 0.06506584043377227 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | BMP8A | BMP8B | chr1 | 39523012 | chr1 | 39763202 | BND | MantaBND:0:3899:3900:1:0:0:1 | 0.7267463248576777 | PASS | 0 | 0 | 0 | 0 | 43.0 | 0.03104575163398693 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ADAMTS7 | . | chr15 | 78766229 | chr15 | 82327666 | BND | MantaBND:0:151105:151106:2:0:0:0 | 0.7237976600991877 | PASS | 0 | 0 | 0 | 0 | 44.0 | 0.024305555555555556 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | CLCNKB | FAM131C | chr1 | 16049887 | chr1 | 16059633 | DEL | MantaDEL:0:1555:1560:1:0:0 | 0.6522138084381792 | PASS | 0 | 3 | 0 | 0 | 58.0 | 0.048956661316211875 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | OR5H1 | OR5H15 | chr3 | 98132783 | chr3 | 98168684 | DUP | MantaDUP:TANDEM:0:39536:39537:1:0:0 | 0.5663403754108872 | PASS | 2 | 0 | 0 | 0 | 43.0 | 0.008903133903133903 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | VCX2 | VCX3B | chrX | 8170127 | chrX | 8466296 | BND | MantaBND:0:192165:192166:0:1:0:1 | 0.45605636111932096 | PASS | 56 | 478 | 0 | 0 | 141.0 | 0.03189755529685681 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | RET | . | chr10 | 43114258 | chr13 | 76366796 | BND | MantaBND:0:65920:108257:0:0:0:1 | 0.4320084343086519 | PASS | 17 | 0 | 0 | 0 | 166.0 | 0.02126309108219613 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | ACTB | . | chr7 | 5526902 | chr7 | 118129997 | BND | MantaBND:0:78424:78793:0:0:0:1 | 0.40589687040067296 | PASS | 24 | 0 | 0 | 0 | 55.0 | 0.00513183507343833 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | MFF | PDE6A | chr2 | 227357058 | chr5 | 149932081 | BND | MantaBND:0:11104:11909:0:0:0:0 | 0.392195782554522 | PASS | 153 | 0 | 0 | 0 | 67.0 | 0.05810055865921788 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | LYZL1 | . | chr10 | 29289137 | chr10 | 30629810 | BND | MantaBND:0:107648:107649:0:0:0:1 | 0.3665858058042756 | PASS | 0 | 0 | 0 | 0 | 123.0 | 0.06176961602671119 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | KRT6A | KRT6B | chr12 | 52491736 | chr12 | 52450472 | DUP | MantaDUP:TANDEM:0:129043:129046:0:0:0 | 0.3086591172436177 | PASS | 0 | 2 | 0 | 0 | 61.0 | 0.014111922141119221 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | FAM131C | . | chr1 | 16059898 | chr1 | 16036655 | DUP | MantaDUP:TANDEM:0:1554:1555:1:0:0 | 0.2387184986202528 | PASS | 2 | 0 | 0 | 0 | 52.0 | 0.022489539748953975 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | MUC4 | . | chr3 | 195788654 | chr3_KI270779v1_alt | 166031 | BND | MantaBND:0:45909:45930:2:0:0:0 | 0.22880988376519457 | PASS | 125 | 0 | 0 | 0 | 44.0 | 0.018906144496961513 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | OR5M3 | . | chr11 | 56470240 | chr11 | 56448831 | BND | MantaBND:0:118456:118457:1:0:0:1 | 0.163965217861507 | PASS | 0 | 0 | 0 | 0 | 44.0 | 0.015066964285714286 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | REG3A | REG3G | chr2 | 79158379 | chr2 | 79027045 | BND | MantaBND:0:23188:23189:1:0:0:0 | 0.12514659972822723 | PASS | 0 | 0 | 0 | 0 | 129.0 | 0.08614232209737828 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | UGT2B10 | . | chr4 | 68827335 | chr4 | 69009126 | BND | MantaBND:0:49792:49793:0:0:0:0 | 0.0933734751105813 | PASS | 0 | 0 | 0 | 0 | 51.0 | 0.01740211311373524 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | PSG6 | PSG9 | chr19 | 42907810 | chr19 | 43259004 | DEL | MantaDEL:0:178493:178501:1:0:0 | 0.07154783646424366 | PASS | 0 | 0 | 0 | 0 | 118.0 | 0.032044198895027624 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | PAGE2 | PAGE2B | chrX | 55091431 | chrX | 55077544 | DUP | MantaDUP:TANDEM:0:194955:194956:0:0:0 | 0.0704426107152208 | PASS | 0 | 0 | 0 | 0 | 51.0 | 0.019825535289452814 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ULBP1 | . | chr6 | 149968633 | chr6 | 150001617 | BND | MantaBND:0:53101:76925:1:0:0:0 | 0.05748159598890225 | PASS | 0 | 0 | 0 | 0 | 57.0 | 0.02424600827912478 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | CYP2D6 | CYP2D7 | chr22 | 42130696 | chr22 | 42144477 | DUP | MantaDUP:TANDEM:0:191140:191143:11:0:0 | 0.0573348677419585 | PASS | 0 | 0 | 0 | 0 | 88.0 | 0.026018099547511313 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | CSPG4 | . | chr15 | 75689452 | chr15 | 77897396 | BND | MantaBND:0:150926:150927:1:0:0:0 | 0.04419654119840389 | FAIL | 169 | 0 | 0 | 0 | 39.0 | 0.016129032258064516 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | KIR2DS4 | KIR3DL2 | chr19 | 54848022 | chr19 | 54866700 | DUP | MantaDUP:TANDEM:0:180448:180526:0:0:0 | 0.04304122961491396 | FAIL | 0 | 0 | 0 | 0 | 40.0 | 0.008710801393728223 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | FUT2 | . | chr19 | 48703301 | chr19 | 48680259 | DEL | MantaDEL:0:179416:179417:0:0:0 | 0.04215835407351579 | FAIL | 2 | 0 | 0 | 0 | 50.0 | 0.025657472738935216 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | SVIL | . | chr10 | 29494977 | chr10 | 30689207 | BND | MantaBND:0:107671:107672:1:0:0:0 | 0.027282042185795056 | FAIL | 0 | 0 | 0 | 0 | 59.0 | 0.03625815808556925 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | MUC19 | . | chr12 | 40483603 | chrUn_JTFH01000840v1_decoy | 544 | BND | MantaBND:0:127781:127998:7:2:0:0 | 0.025489215502829673 | FAIL | 870 | 0 | 0 | 0 | 40.0 | 0.01729559748427673 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | MUC3A | . | chr7 | 100958934 | chrUn_JTFH01000506v1_decoy | 296 | BND | MantaBND:0:84702:84775:17:0:0:0 | 0.018912063123593677 | FAIL | 32 | 0 | 0 | 0 | 30.0 | 0.012360939431396786 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | PABPC3 | PDS5A | chr13 | 25097776 | chr4 | 39973121 | BND | MantaBND:0:43518:48346:1:0:0:1 | 0.01855542353286955 | FAIL | 290 | 0 | 0 | 0 | 46.0 | 0.01067378252168112 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | OR2L2 | . | chr1 | 248039015 | chr1 | 247991003 | DEL | MantaDEL:0:17979:17980:0:0:0 | 0.01579006429190525 | FAIL | 0 | 0 | 0 | 0 | 46.0 | 0.013478260869565217 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | HLA-DRB1 | . | chr6 | 32589824 | chr6_GL000253v2_alt | 3855456 | BND | MantaBND:0:69381:69391:1:0:0:0 | 0.011801535576916537 | FAIL | 466 | 0 | 0 | 0 | 62.0 | 0.008632138114209827 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | OR5H1 | . | chr3 | 98133264 | chr3 | 98207800 | DUP | MantaDUP:TANDEM:0:39536:39538:0:0:0 | 0.011089276330554121 | FAIL | 0 | 0 | 0 | 0 | 55.0 | 0.012316010814058276 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | MUC20 | . | chr3 | 195725152 | chr3_KI270936v1_alt | 68926 | BND | MantaBND:0:45849:45850:0:1:0:0 | 0.010291190757102041 | FAIL | 1597 | 0 | 0 | 0 | 39.0 | 0.01962513781697905 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | PABPC1 | . | chr8 | 100706972 | chr12 | 63823506 | BND | MantaBND:0:48347:48348:0:0:0:0 | 0.00819155940890509 | FAIL | 1815 | 0 | 0 | 0 | 42.0 | 0.016571724495080268 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | TUBB8B | . | chr18 | 47810 | chr16 | 90095857 | BND | MantaBND:0:46220:55898:1:0:0:0 | 0.007532587414319874 | FAIL | 4 | 0 | 0 | 0 | 52.0 | 0.020282728948985862 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | HLA-A | . | chr6 | 29946763 | chr6 | 29931720 | DUP | MantaDUP:TANDEM:0:68047:68307:2:0:0 | 0.005089442158166063 | FAIL | 78 | 0 | 0 | 0 | 44.0 | 0.012055837563451776 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | PABPC3 | . | chr13 | 25097231 | chr12 | 63823054 | BND | MantaBND:0:43518:48347:0:0:0:0 | 0.004971357604564049 | FAIL | 590 | 0 | 0 | 0 | 46.0 | 0.009653794940079893 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | SCAI | TMEM127 | chr9 | 125093148 | chr2 | 96248657 | BND | MantaBND:0:24036:24037:0:4:0:1 | 0.004869471061896536 | FAIL | 0 | 4 | 0 | 0 | 48.0 | 0.004982752012265236 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | HLA-DRB5 | . | chr6 | 32530227 | chr6_GL000252v2_alt | 3788810 | BND | MantaBND:0:69380:69563:0:0:0:0 | 0.0028632593544056333 | FAIL | 947 | 0 | 0 | 0 | 66.0 | 0.0113314447592068 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | GSTA1 | GSTA2 | chr6 | 52799243 | chr6 | 52757863 | DUP | MantaDUP:TANDEM:0:71637:71638:0:0:0 | 0.0028102637611380184 | FAIL | 2 | 2 | 0 | 0 | 50.0 | 0.02957906712172924 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | HLA-DQB1 | . | chr6 | 32660015 | chr6_GL000256v2_alt | 4057125 | BND | MantaBND:0:69797:69802:1:0:0:1 | 0.0023929275347341376 | FAIL | 461 | 0 | 0 | 0 | 179.0 | 0.030353569046030687 | 1 | 1 | 0 |
| pos_somatic_028.manta_fusion | KRTAP5-6 | KRTAP5-8 | chr11 | 1697311 | chr11 | 71538079 | DEL | MantaDEL:0:111874:114950:0:1:0 | 0.0010789138912339197 | FAIL | 33 | 1488 | 0 | 0 | 125.0 | 0.0927143778207608 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | VCX3A | VCX3B | chrX | 6533951 | chrX | 8466026 | BND | MantaBND:0:192163:192165:0:4:0:1 | 0.00019622029239320507 | FAIL | 469 | 302 | 0 | 0 | 114.0 | 0.01753646404181772 | 1 | 0 | 0 |
| pos_somatic_028.manta_fusion | ICOSLG | . | chr21 | 44229893 | chr21 | 5034083 | BND | MantaBND:0:185910:185916:0:0:0:1 | 4.059710340577442e-05 | FAIL | 5 | 0 | 0 | 0 | 46.0 | 0.002530138413454383 | 1 | 0 | 0 |
70 rows