File Info
- Filename
- pos_somatic_029.manta_fusion.fusion_calls.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/20_caller_benchmark_revalidation/hd789-modelD-6a21f937/variant_calling/manta_fusion/pos_somatic_029/pos_somatic_029.manta_fusion.fusion_calls.tsv
- Size
- 11.1 KB
- Workflow Run
- sv-benchmark-hd789-modelD-6a21f937
- Published
- Jun 04, 2026 4:10 PM
Content
View in new tab| specimen | gene1 | gene2 | chr1 | pos1 | chr2 | pos2 | sv_type | event_id | score | filter_call | pon_bp1_count | pon_bp2_count | pon_pair_count | cosmic_hit | somaticscore | manual_vaf | is_pass | is_interchrom | is_paralog_of_higher_score_call |
| pos_somatic_029.manta_fusion | ENSG00000241489 | EOLA1 | chrX | 149524096 | chrX | 149546746 | DEL | MantaDEL:1:188050:188052:0:0:0 | 0.9999132814281759 | PASS | 0 | 0 | 0 | 0 | 82.0 | 0.05845674201091192 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | RRAS | . | chr19 | 49640004 | chr19 | 43270404 | DUP | MantaDUP:TANDEM:1:168260:168261:0:0:0 | 0.9996259687733849 | PASS | 0 | 0 | 0 | 0 | 78.0 | 0.07133243606998654 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | HES7 | PLSCR3 | chr17 | 8121596 | chr17 | 7394345 | DEL | MantaDEL:1:151669:151670:0:0:0 | 0.9993573224207841 | PASS | 0 | 0 | 0 | 0 | 126.0 | 0.08692676249144421 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | BCL2 | . | chr18 | 63314872 | chr18 | 64623921 | DEL | MantaDEL:1:70743:162519:0:0:0 | 0.999135210218387 | PASS | 2 | 0 | 0 | 0 | 722.0 | 0.12560856864654332 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | OR5H1 | . | chr3 | 98133048 | chr3 | 98207773 | DUP | MantaDUP:TANDEM:1:37306:37308:1:0:0 | 0.9988199222086735 | PASS | 0 | 0 | 0 | 0 | 101.0 | 0.036659228562320685 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | ROS1 | SLC34A2 | chr6 | 117337163 | chr4 | 25665007 | BND | MantaBND:1:45219:45220:1:0:0:0 | 0.9984967206420766 | PASS | 2 | 89 | 0 | 0 | 933.0 | 0.03104537400816578 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | CCDC6 | RET | chr10 | 59878857 | chr10 | 43114500 | BND | MantaBND:1:101949:102047:0:0:0:0 | 0.9970139262619448 | PASS | 0 | 6 | 0 | 1 | 137.0 | 0.018659711075441412 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | ETFA | TYRO3 | chr15 | 76261435 | chr15 | 41561271 | BND | MantaBND:1:138661:139065:0:0:0:0 | 0.9967257350684487 | PASS | 0 | 825 | 0 | 0 | 137.0 | 0.11554621848739496 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | CASP8 | TRAK2 | chr2 | 201236698 | chr2 | 201380664 | DEL | MantaDEL:1:28541:28542:0:3:0 | 0.9962556877784589 | PASS | 0 | 0 | 0 | 0 | 50.0 | 0.03994490358126722 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | EP400 | . | chr12 | 131982269 | chr12 | 132132535 | DEL | MantaDEL:1:127352:127353:0:0:0 | 0.995923897116735 | PASS | 0 | 0 | 0 | 0 | 38.0 | 0.01049618320610687 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | FAM47C | . | chrX | 37009377 | chr8 | 144118681 | BND | MantaBND:1:182556:182653:0:0:0:0 | 0.9942719865215723 | PASS | 186 | 0 | 0 | 0 | 89.0 | 0.0465 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | ADAMTS18 | VAPA | chr16 | 77342077 | chr18 | 9931832 | BND | MantaBND:1:143474:143477:0:0:0:1 | 0.9924788099358228 | PASS | 0 | 0 | 0 | 0 | 61.0 | 0.06490384615384616 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | TRAM1L1 | . | chr4 | 117085241 | chr4 | 117085991 | DEL | MantaDEL:1:49757:49757:2:0:0 | 0.9891264164740735 | PASS | 0 | 0 | 0 | 0 | 35.0 | 0.01619047619047619 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | MOSMO | ZBTB17 | chr16 | 22075698 | chr1 | 15970019 | BND | MantaBND:1:1475:1476:0:0:0:0 | 0.9890726080865793 | PASS | 406 | 0 | 0 | 0 | 141.0 | 0.10046728971962617 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | SCAI | TMEM127 | chr9 | 125093148 | chr2 | 96248657 | BND | MantaBND:1:22662:22663:0:4:0:0 | 0.9888221134014451 | PASS | 0 | 4 | 0 | 0 | 58.0 | 0.005771609179606981 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | FARS2 | RPP40 | chr6 | 5265176 | chr6 | 4998751 | DEL | MantaDEL:1:62786:62787:0:0:0 | 0.987845244729274 | PASS | 0 | 0 | 0 | 0 | 45.0 | 0.02027027027027027 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | CACNA1A | GCDH | chr19 | 13208701 | chr19 | 12891359 | DUP | MantaDUP:TANDEM:1:165252:165253:0:1:0 | 0.9874528393477032 | PASS | 15 | 0 | 0 | 0 | 52.0 | 0.014375876577840112 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | ENSG00000249141 | LAPTM4B | chr6 | 166920475 | chr8 | 97775791 | BND | MantaBND:1:9988:73573:0:1:0:1 | 0.9721077025767462 | PASS | 0 | 185 | 0 | 0 | 67.0 | 0.09082733812949641 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | DCDC1 | ESPL1 | chr11 | 31344968 | chr12 | 53290893 | BND | MantaBND:1:121196:121769:0:0:0:0 | 0.9600615470296749 | PASS | 0 | 0 | 0 | 0 | 44.0 | 0.021638330757341576 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | PABPC3 | . | chr13 | 25096624 | chr3 | 155309415 | BND | MantaBND:1:41166:41171:0:0:0:1 | 0.9523419188893322 | PASS | 0 | 0 | 0 | 0 | 76.0 | 0.07414634146341463 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | ARC | . | chr8 | 142613959 | chr8 | 110392594 | DUP | MantaDUP:TANDEM:1:91671:91802:0:1:0 | 0.9372158444907417 | PASS | 0 | 0 | 0 | 0 | 32.0 | 0.005190311418685121 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | PABPC1 | PDS5A | chr8 | 100706705 | chr4 | 39973387 | BND | MantaBND:1:45670:45671:0:0:0:1 | 0.9090086332916613 | PASS | 76 | 0 | 0 | 0 | 480.0 | 0.1644990366088632 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | KDM4E | KDM4F | chr11 | 95025782 | chr11 | 95049321 | DEL | MantaDEL:1:114873:114874:0:0:0 | 0.8987378649391268 | PASS | 0 | 0 | 0 | 0 | 48.0 | 0.025869759143621766 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | APOL1 | APOL4 | chr22 | 36255124 | chr22 | 36201728 | BND | MantaBND:1:179491:179492:1:0:0:1 | 0.8670318729794767 | PASS | 4 | 0 | 0 | 0 | 81.0 | 0.10344827586206896 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | ABHD2 | VAPA | chr15 | 89201199 | chr18 | 9954083 | BND | MantaBND:1:143471:143473:0:1:0:1 | 0.8488296941133461 | PASS | 0 | 0 | 0 | 0 | 57.0 | 0.0608 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | OR5M3 | . | chr11 | 56470149 | chr11 | 56448796 | BND | MantaBND:1:111690:111691:0:0:0:0 | 0.8166727554882891 | PASS | 0 | 0 | 0 | 0 | 49.0 | 0.014820592823712949 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | PSG6 | PSG9 | chr19 | 42907838 | chr19 | 43259058 | DEL | MantaDEL:1:168224:168225:0:0:0 | 0.7241761762574405 | PASS | 0 | 0 | 0 | 0 | 103.0 | 0.031464530892448515 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | LAPTM4B | . | chr8 | 97816180 | chr1 | 153380076 | BND | MantaBND:1:9985:9987:1:0:0:1 | 0.7184912991639211 | PASS | 10 | 0 | 0 | 0 | 137.0 | 0.09256844850065189 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | CDKN2B | MTAP | chr9 | 22005935 | chr9 | 21899142 | DEL | MantaDEL:1:93250:93251:0:0:0 | 0.7088233871574953 | PASS | 4 | 0 | 0 | 0 | 362.0 | 0.03512497957850025 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | KRT6B | KRT6C | chr12 | 52451783 | chr12 | 52473607 | DEL | MantaDEL:1:121639:121643:0:0:0 | 0.697004841414356 | PASS | 10 | 3 | 0 | 0 | 33.0 | 0.010348071495766699 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | SMN1 | . | chr5 | 70947228 | chr8 | 127749254 | BND | MantaBND:1:58240:58285:0:0:0:1 | 0.6797094336570634 | PASS | 0 | 2 | 0 | 0 | 1081.0 | 0.1931580172213172 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | LYZL1 | . | chr10 | 29289159 | chr10 | 30629842 | BND | MantaBND:1:101482:101483:0:0:0:1 | 0.6754179956454752 | PASS | 0 | 0 | 0 | 0 | 105.0 | 0.047752808988764044 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | RET | . | chr10 | 43114258 | chr13 | 76366796 | BND | MantaBND:1:101949:102046:0:0:0:1 | 0.6446082150013586 | PASS | 17 | 0 | 0 | 0 | 172.0 | 0.01934566145092461 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | FAM136A | SENP7 | chr2 | 70297477 | chr3 | 101414593 | BND | MantaBND:1:21340:21346:0:0:0:0 | 0.5935501467547172 | PASS | 0 | 0 | 0 | 0 | 37.0 | 0.013008130081300813 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | HERC2 | . | chr15 | 28174607 | chr15 | 30817912 | BND | MantaBND:1:137883:137884:0:0:0:0 | 0.5393553562671578 | PASS | 0 | 0 | 0 | 0 | 42.0 | 0.021645021645021644 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | CLCNKB | FAM131C | chr1 | 16049899 | chr1 | 16059615 | DEL | MantaDEL:1:1486:1496:1:0:0 | 0.5199069944371213 | PASS | 0 | 3 | 0 | 0 | 50.0 | 0.037467700258397935 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | ACTB | . | chr7 | 5526918 | chr7 | 118129929 | BND | MantaBND:1:73889:74235:0:0:0:1 | 0.44904120527855 | PASS | 24 | 0 | 0 | 0 | 45.0 | 0.0034478003034064267 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | BMP8A | BMP8B | chr1 | 39523008 | chr1 | 39763202 | BND | MantaBND:1:3810:3811:1:0:0:0 | 0.43416477425336764 | PASS | 0 | 0 | 0 | 0 | 46.0 | 0.03943661971830986 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | HLA-DQA1 | . | chr6 | 32642610 | chr10 | 119973489 | BND | MantaBND:1:63549:65732:0:0:0:1 | 0.3541500580105678 | PASS | 125 | 0 | 0 | 0 | 44.0 | 0.016320474777448073 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | HLA-DQA2 | . | chr6 | 32745983 | chr10 | 119972925 | BND | MantaBND:1:63552:65719:0:0:0:1 | 0.3288105092990449 | PASS | 124 | 0 | 0 | 0 | 80.0 | 0.011438214888430527 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | SVIL | . | chr10 | 29495000 | chr10 | 30689198 | BND | MantaBND:1:101505:101506:1:0:0:1 | 0.3203905211885351 | PASS | 0 | 0 | 0 | 0 | 64.0 | 0.044722719141323794 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | CA10 | TBP | chr17 | 51831716 | chr6 | 170562214 | BND | MantaBND:1:40900:73796:1:0:0:1 | 0.2844890682310628 | PASS | 0 | 4 | 0 | 0 | 40.0 | 0.010935601458080195 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | TUBB2A | . | chr6 | 3156149 | chr6 | 3179614 | DUP | MantaDUP:TANDEM:1:62704:62707:0:0:0 | 0.129480908018878 | PASS | 0 | 0 | 0 | 0 | 38.0 | 0.027548209366391185 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | MLLT3 | TCF4 | chr9 | 20414301 | chr18 | 55586156 | BND | MantaBND:1:14376:93139:1:4:0:1 | 0.11837605808514462 | PASS | 836 | 0 | 0 | 0 | 61.0 | 0.01987353206865402 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | REG3A | REG3G | chr2 | 79158354 | chr2 | 79027130 | BND | MantaBND:1:21865:21866:1:0:0:0 | 0.11592367999019165 | PASS | 0 | 0 | 0 | 0 | 111.0 | 0.0673854447439353 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | PAGE2 | PAGE2B | chrX | 55091431 | chrX | 55077510 | DUP | MantaDUP:TANDEM:1:183859:183860:0:0:0 | 0.11202933906010863 | PASS | 0 | 0 | 0 | 0 | 59.0 | 0.026854219948849106 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | HLA-DRB1 | . | chr6 | 32589778 | chrHLA-DRB1*09:21 | 563 | BND | MantaBND:1:65303:65484:4:0:0:0 | 0.10242035219079296 | PASS | 859 | 0 | 0 | 0 | 76.0 | 0.02169751116783663 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | PABPC3 | PDS5A | chr13 | 25097751 | chr4 | 39973099 | BND | MantaBND:1:41171:45670:1:0:0:1 | 0.0695194047700434 | PASS | 290 | 0 | 0 | 0 | 46.0 | 0.011428571428571429 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | OR2L2 | . | chr1 | 248038987 | chr1 | 247991047 | DEL | MantaDEL:1:16983:16984:0:0:0 | 0.058723021276491545 | PASS | 0 | 0 | 0 | 0 | 44.0 | 0.013539651837524178 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | KIR2DS4 | KIR3DL2 | chr19 | 54847992 | chr19 | 54866647 | DUP | MantaDUP:TANDEM:1:170083:170166:0:0:0 | 0.03547802874738129 | FAIL | 0 | 0 | 0 | 0 | 41.0 | 0.007640067911714771 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | MUC19 | . | chr12 | 40483603 | chrUn_JTFH01000840v1_decoy | 544 | BND | MantaBND:1:120646:120647:8:1:0:0 | 0.03173844237013742 | FAIL | 870 | 0 | 0 | 0 | 44.0 | 0.035509736540664374 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | KRT37 | KRT38 | chr17 | 41422867 | chr17 | 41439408 | DUP | MantaDUP:TANDEM:1:154922:154923:1:0:0 | 0.025518351735653526 | FAIL | 0 | 0 | 0 | 0 | 97.0 | 0.05591397849462366 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | TUBB8B | . | chr18 | 47773 | chr16 | 90095850 | BND | MantaBND:1:43716:99072:1:0:0:0 | 0.025251736984249037 | FAIL | 4 | 0 | 0 | 0 | 41.0 | 0.01948955916473318 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | KRT6A | KRT6B | chr12 | 52491764 | chr12 | 52450493 | DUP | MantaDUP:TANDEM:1:121639:121642:1:0:0 | 0.018583984657942434 | FAIL | 0 | 2 | 0 | 0 | 52.0 | 0.010316875460574797 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | FUT2 | . | chr19 | 48703392 | chr19 | 48680414 | DEL | MantaDEL:1:169108:169109:0:0:0 | 0.017170395817833382 | FAIL | 2 | 0 | 0 | 0 | 47.0 | 0.02009273570324575 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | ADAMTS7 | . | chr15 | 78766292 | chr15 | 82327636 | BND | MantaBND:1:142372:142373:2:0:0:0 | 0.015480660299642419 | FAIL | 0 | 0 | 0 | 0 | 42.0 | 0.02046783625730994 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | ULBP1 | . | chr6 | 149968695 | chr6 | 150001577 | BND | MantaBND:1:72466:72467:0:0:0:1 | 0.008354200959499675 | FAIL | 0 | 0 | 0 | 0 | 56.0 | 0.023083264633140973 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | HLA-DRB5 | . | chr6 | 32519401 | chr6_GL000256v2_alt | 3900109 | BND | MantaBND:1:39140:65376:10:0:0:0 | 0.0060708148656084225 | FAIL | 1002 | 0 | 0 | 0 | 45.0 | 0.04494925084581924 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | VCX2 | VCX3B | chrX | 8170097 | chrX | 8466176 | BND | MantaBND:1:181303:181311:0:2:0:0 | 0.006028837920220508 | FAIL | 56 | 302 | 0 | 0 | 86.0 | 0.01748095024652622 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | PABPC3 | . | chr13 | 25097311 | chr12 | 63823002 | BND | MantaBND:1:41170:41171:0:0:0:0 | 0.005450751625621858 | FAIL | 590 | 0 | 0 | 0 | 51.0 | 0.016324381253291206 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | GPAT2 | . | chr2 | 96023129 | chr2 | 97082361 | BND | MantaBND:1:22646:22647:3:0:0:0 | 0.00377219757847145 | FAIL | 0 | 0 | 0 | 0 | 43.0 | 0.015407190022010272 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | HLA-DRB1 | HLA-DRB5 | chr6 | 32581609 | chr6 | 32520433 | DEL | MantaDEL:1:39132:39140:4:0:0 | 0.0017492224938081514 | FAIL | 954 | 0 | 0 | 0 | 34.0 | 0.008805723720418272 | 1 | 0 | 0 |
| pos_somatic_029.manta_fusion | SH2D4A | . | chr8 | 19361232 | chr6 | 55083455 | BND | MantaBND:1:84865:84871:0:1:0:1 | 0.0017239968743067396 | FAIL | 0 | 0 | 0 | 0 | 33.0 | 0.009195402298850575 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | MUC6 | . | chr11 | 1016509 | chr11_KI270902v1_alt | 85851 | BND | MantaBND:1:108303:108310:4:0:0:0 | 0.0015464276499928362 | FAIL | 13 | 0 | 0 | 0 | 39.0 | 0.023593466424682397 | 1 | 1 | 0 |
| pos_somatic_029.manta_fusion | MUC3A | . | chr7 | 100965743 | chrUn_KN707951v1_decoy | 546 | BND | MantaBND:1:79910:79921:0:0:0:0 | 2.8554043504880123e-05 | FAIL | 0 | 0 | 0 | 0 | 38.0 | 0.008855154965211892 | 1 | 1 | 0 |
66 rows