File Info
- Filename
- pos_somatic_004.manta_fusion.fusion_calls.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/20_caller_benchmark_revalidation/hd789-modelD-6a21f937/variant_calling/manta_fusion/pos_somatic_004/pos_somatic_004.manta_fusion.fusion_calls.tsv
- Size
- 11.5 KB
- Workflow Run
- sv-benchmark-hd789-modelD-6a21f937
- Published
- Jun 04, 2026 4:10 PM
Content
View in new tab| specimen | gene1 | gene2 | chr1 | pos1 | chr2 | pos2 | sv_type | event_id | score | filter_call | pon_bp1_count | pon_bp2_count | pon_pair_count | cosmic_hit | somaticscore | manual_vaf | is_pass | is_interchrom | is_paralog_of_higher_score_call |
| pos_somatic_004.manta_fusion | ENSG00000241489 | EOLA1 | chrX | 149524096 | chrX | 149546746 | DEL | MantaDEL:1:209001:209003:0:0:0 | 0.9998987920199436 | PASS | 0 | 0 | 0 | 0 | 73.0 | 0.04853723404255319 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | RRAS | . | chr19 | 49640004 | chr19 | 43270404 | DUP | MantaDUP:TANDEM:1:187309:188339:0:0:0 | 0.999871650321168 | PASS | 0 | 0 | 0 | 0 | 93.0 | 0.09941520467836257 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | BCL2 | . | chr18 | 63314872 | chr18 | 64623921 | DEL | MantaDEL:1:80093:181307:0:0:0 | 0.9998197159119734 | PASS | 2 | 0 | 0 | 0 | 838.0 | 0.14784394250513347 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | ADAMTS18 | VAPA | chr16 | 77342077 | chr18 | 9931832 | BND | MantaBND:1:161285:161286:0:0:0:1 | 0.9995594543313563 | PASS | 0 | 0 | 0 | 0 | 59.0 | 0.05779334500875657 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | ROS1 | SLC34A2 | chr6 | 117337163 | chr4 | 25665007 | BND | MantaBND:1:50110:50112:1:1:0:0 | 0.9985385265236097 | PASS | 2 | 89 | 0 | 0 | 967.0 | 0.03095420823740087 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | HES7 | PLSCR3 | chr17 | 8121596 | chr17 | 7394345 | DEL | MantaDEL:1:169868:169869:0:0:0 | 0.9980321849111906 | PASS | 0 | 0 | 0 | 0 | 114.0 | 0.0785997357992074 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | CCDC6 | RET | chr10 | 59878857 | chr10 | 43114500 | BND | MantaBND:1:115313:115315:0:0:0:0 | 0.9977410978344187 | PASS | 0 | 6 | 0 | 1 | 170.0 | 0.02511294180175392 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | FAM47C | . | chrX | 37009377 | chr8 | 144118681 | BND | MantaBND:1:202407:202519:0:0:0:1 | 0.9968359751437043 | PASS | 186 | 0 | 0 | 0 | 79.0 | 0.02907488986784141 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | TRAM1L1 | . | chr4 | 117085241 | chr4 | 117085991 | DEL | MantaDEL:1:55570:55570:2:0:0 | 0.9965886080983246 | PASS | 0 | 0 | 0 | 0 | 33.0 | 0.012649800266311585 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | CACNA1A | GCDH | chr19 | 13208701 | chr19 | 12891359 | DUP | MantaDUP:TANDEM:1:184149:184150:0:1:0 | 0.9958152327459173 | PASS | 15 | 0 | 0 | 0 | 48.0 | 0.012278801011195377 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | EP400 | . | chr12 | 131982269 | chr12 | 132132535 | DEL | MantaDEL:1:143283:143284:0:0:0 | 0.9891822887826092 | PASS | 0 | 0 | 0 | 0 | 45.0 | 0.019138755980861243 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | ARC | . | chr8 | 142613959 | chr8 | 110392594 | DUP | MantaDUP:TANDEM:1:103798:104215:0:0:0 | 0.9881805006941922 | PASS | 0 | 0 | 0 | 0 | 35.0 | 0.008861940298507462 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | KRT37 | KRT38 | chr17 | 41422807 | chr17 | 41439231 | DUP | MantaDUP:TANDEM:1:173261:173262:1:0:0 | 0.985471256807341 | PASS | 0 | 0 | 0 | 0 | 292.0 | 0.06965070069023217 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | CASP8 | TRAK2 | chr2 | 201236698 | chr2 | 201380664 | DEL | MantaDEL:1:31501:31502:0:2:0 | 0.9849799360099161 | PASS | 0 | 0 | 0 | 0 | 47.0 | 0.036322360953461974 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | MOSMO | ZBTB17 | chr16 | 22075698 | chr1 | 15970019 | BND | MantaBND:1:2213:2216:0:0:0:1 | 0.9792002616654465 | PASS | 406 | 0 | 0 | 0 | 113.0 | 0.08983451536643026 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | BMP8A | BMP8B | chr1 | 39523029 | chr1 | 39763222 | BND | MantaBND:1:4533:4534:2:0:0:0 | 0.9760214779261378 | PASS | 0 | 0 | 0 | 0 | 51.0 | 0.050808314087759814 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | PABPC1 | PDS5A | chr8 | 100706705 | chr4 | 39973387 | BND | MantaBND:1:50633:50637:0:0:0:1 | 0.9629932807998148 | PASS | 76 | 0 | 0 | 0 | 475.0 | 0.16952933303591344 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | CA10 | TBP | chr17 | 51831754 | chr6 | 170562216 | BND | MantaBND:1:21538:46501:0:0:0:1 | 0.9622029261377959 | PASS | 0 | 4 | 0 | 0 | 52.0 | 0.017357762777242044 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | ABHD18 | . | chr4 | 127967941 | chr8 | 127749254 | BND | MantaBND:1:65993:66339:0:0:0:1 | 0.9260087937492187 | PASS | 0 | 2 | 0 | 0 | 1050.0 | 0.20605887396398972 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | ENSG00000249141 | LAPTM4B | chr6 | 166920475 | chr8 | 97775791 | BND | MantaBND:1:11506:83261:0:1:0:1 | 0.9226218797160597 | PASS | 0 | 185 | 0 | 0 | 56.0 | 0.06645569620253164 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | PABPC3 | . | chr13 | 25096644 | chr3 | 155309407 | BND | MantaBND:1:45583:45585:0:0:0:0 | 0.9137602508415646 | PASS | 0 | 0 | 0 | 0 | 89.0 | 0.08837579617834394 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | ABTB2 | . | chr11 | 34152559 | chr11 | 34150601 | DUP | MantaDUP:TANDEM:1:124737:124738:0:0:0 | 0.8405853402523584 | PASS | 0 | 0 | 0 | 0 | 32.0 | 0.011370814908401769 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | CDKN2B | MTAP | chr9 | 22005935 | chr9 | 21899142 | DEL | MantaDEL:1:105846:105847:0:0:0 | 0.8393316734126155 | PASS | 4 | 0 | 0 | 0 | 383.0 | 0.03703031403158468 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | ACTB | . | chr7 | 5526936 | chr7 | 118129999 | BND | MantaBND:1:83593:83974:0:0:0:0 | 0.8121300617301964 | PASS | 24 | 0 | 0 | 0 | 74.0 | 0.008883008883008883 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | OR5M3 | . | chr11 | 56470263 | chr11 | 56448799 | BND | MantaBND:1:126009:126010:0:0:0:0 | 0.8083473430993747 | PASS | 0 | 0 | 0 | 0 | 54.0 | 0.021052631578947368 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | FARS2 | RPP40 | chr6 | 5265176 | chr6 | 4998751 | DEL | MantaDEL:1:71083:71084:0:0:0 | 0.7583876666244478 | PASS | 0 | 0 | 0 | 0 | 44.0 | 0.015736766809728183 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | CLCNKB | FAM131C | chr1 | 16049889 | chr1 | 16059602 | DEL | MantaDEL:1:2224:2232:1:0:0 | 0.7352128908245155 | PASS | 0 | 3 | 0 | 0 | 54.0 | 0.04147982062780269 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | ADAMTS7 | . | chr15 | 78766185 | chr15 | 82327633 | BND | MantaBND:1:160193:160194:2:0:0:1 | 0.6932974463122544 | PASS | 0 | 0 | 0 | 0 | 54.0 | 0.039923954372623575 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | CYP4F22 | ZSWIM4 | chr19 | 15526194 | chr19 | 13830272 | DUP | MantaDUP:TANDEM:1:184268:184269:0:0:0 | 0.6465013531958768 | PASS | 0 | 0 | 0 | 0 | 37.0 | 0.0110803324099723 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | LYZL1 | . | chr10 | 29289194 | chr10 | 30629831 | BND | MantaBND:1:114659:114660:0:0:0:1 | 0.6331372393914784 | PASS | 0 | 0 | 0 | 0 | 98.0 | 0.048638132295719845 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | KDM4E | KDM4F | chr11 | 95025772 | chr11 | 95049321 | DEL | MantaDEL:1:129542:129543:0:0:0 | 0.4818144666555021 | PASS | 0 | 0 | 0 | 0 | 46.0 | 0.02277163305139883 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | RET | . | chr10 | 43114258 | chr13 | 76366796 | BND | MantaBND:1:115313:115314:0:0:0:1 | 0.3686566603386902 | PASS | 17 | 0 | 0 | 0 | 200.0 | 0.025099553517557622 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | DHRS4 | DHRS4L2 | chr14 | 23966363 | chr14 | 24001394 | DUP | MantaDUP:TANDEM:1:148756:148757:1:0:0 | 0.3604609538957964 | PASS | 2 | 10 | 0 | 0 | 39.0 | 0.017321016166281754 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | PSG6 | PSG9 | chr19 | 42907841 | chr19 | 43259020 | DEL | MantaDEL:1:187260:187269:1:0:0 | 0.3207825829525103 | PASS | 0 | 0 | 0 | 0 | 86.0 | 0.025398406374501994 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | SVIL | . | chr10 | 29495000 | chr10 | 30689360 | BND | MantaBND:1:114684:114685:1:0:0:1 | 0.30846399925044415 | PASS | 0 | 0 | 0 | 0 | 82.0 | 0.04785362420830401 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | MLLT3 | TCF4 | chr9 | 20414301 | chr18 | 55586156 | BND | MantaBND:1:16301:105714:1:5:0:1 | 0.26269628804355827 | PASS | 836 | 0 | 0 | 0 | 61.0 | 0.020581778265642153 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | ZNF627 | . | chr19 | 11567896 | chr8 | 127749241 | BND | MantaBND:1:65993:103316:0:0:0:0 | 0.22461032083534033 | PASS | 0 | 2 | 0 | 0 | 87.0 | 0.055396370582617004 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | REG3A | REG3G | chr2 | 79158359 | chr2 | 79027055 | BND | MantaBND:1:24625:24626:1:0:0:0 | 0.22039752412610178 | PASS | 0 | 0 | 0 | 0 | 127.0 | 0.0670391061452514 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | PABPC3 | PDS5A | chr13 | 25097751 | chr4 | 39973088 | BND | MantaBND:1:45585:50633:1:0:0:1 | 0.21935180664871276 | PASS | 290 | 0 | 0 | 0 | 51.0 | 0.012205044751830757 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | KIR2DS4 | KIR3DL2 | chr19 | 54847985 | chr19 | 54866700 | DUP | MantaDUP:TANDEM:1:189125:189274:1:0:0 | 0.2092135709735674 | PASS | 0 | 0 | 0 | 0 | 41.0 | 0.008326029798422436 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | MFF | PDE6A | chr2 | 227357077 | chr5 | 149932049 | BND | MantaBND:1:32893:33373:0:0:0:1 | 0.20076989580708143 | PASS | 153 | 0 | 0 | 0 | 72.0 | 0.07049608355091384 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | VKORC1L1 | . | chr7 | 65873528 | chr7 | 65038259 | DUP | MantaDUP:TANDEM:1:11:14153:0:0:0 | 0.17950852640736023 | PASS | 0 | 0 | 0 | 0 | 38.0 | 0.0044609665427509295 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | HLA-B | HLA-C | chr6 | 31355675 | chr6 | 31270406 | DEL | MantaDEL:1:72509:72514:3:0:0 | 0.17600411172690358 | PASS | 15 | 5 | 0 | 0 | 56.0 | 0.009779951100244499 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | HLA-DRB1 | . | chr6 | 32589739 | chr6_GL000253v2_alt | 3855469 | BND | MantaBND:1:73790:73800:1:0:0:0 | 0.15627895257187477 | PASS | 859 | 0 | 0 | 0 | 73.0 | 0.008982035928143712 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | HLA-A | . | chr6 | 29948068 | chr6 | 29893099 | DEL | MantaDEL:1:13090:72753:0:0:0 | 0.10333216052485956 | PASS | 964 | 0 | 0 | 0 | 117.0 | 0.016362960208255856 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | PABPC3 | . | chr13 | 25097217 | chr12 | 63823188 | BND | MantaBND:1:45585:45588:0:0:0:1 | 0.0984615218598564 | PASS | 590 | 0 | 0 | 0 | 52.0 | 0.013775008199409643 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | OR1L4 | OR1L6 | chr9 | 122724230 | chr9 | 122749919 | DUP | MantaDUP:TANDEM:1:110916:110917:0:0:0 | 0.09320822401548126 | PASS | 4 | 0 | 0 | 0 | 37.0 | 0.022267206477732792 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | MUC3A | . | chr7 | 100955228 | chrUn_JTFH01000965v1_decoy | 3172 | BND | MantaBND:1:90172:90445:25:0:0:1 | 0.0843610291313773 | PASS | 215 | 0 | 0 | 0 | 35.0 | 0.010676156583629894 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | HLA-DQA1 | . | chr6 | 32642250 | chrX | 94552458 | BND | MantaBND:1:71942:74232:0:0:0:1 | 0.05831205762843765 | PASS | 173 | 0 | 0 | 0 | 38.0 | 0.014522821576763486 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | AQP12A | AQP12B | chr2 | 240692181 | chr2 | 240682847 | BND | MantaBND:1:34443:34444:0:0:0:0 | 0.055967697672826666 | PASS | 5 | 2 | 0 | 0 | 41.0 | 0.014371812702828002 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | VCX2 | VCX3B | chrX | 8170127 | chrX | 8466296 | BND | MantaBND:1:200889:200890:0:1:0:1 | 0.050273110455026575 | PASS | 56 | 478 | 0 | 0 | 111.0 | 0.028642149929278642 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | OR2L2 | . | chr1 | 248038990 | chr1 | 247991091 | DEL | MantaDEL:1:19146:19147:0:0:0 | 0.04589369225279405 | FAIL | 0 | 0 | 0 | 0 | 57.0 | 0.023474178403755867 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | KRT6A | KRT6B | chr12 | 52491787 | chr12 | 52450440 | DUP | MantaDUP:TANDEM:1:136990:136994:1:0:0 | 0.03698619021805675 | FAIL | 0 | 2 | 0 | 0 | 47.0 | 0.011969111969111969 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | FUT2 | . | chr19 | 48703394 | chr19 | 48680337 | DEL | MantaDEL:1:188137:188138:0:0:0 | 0.030124535810230446 | FAIL | 2 | 0 | 0 | 0 | 60.0 | 0.033542976939203356 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | PAGE2 | PAGE2B | chrX | 55091435 | chrX | 55077508 | DUP | MantaDUP:TANDEM:1:203845:203846:0:0:0 | 0.023682232198084595 | FAIL | 0 | 0 | 0 | 0 | 67.0 | 0.03319502074688797 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | PABPC1 | . | chr8 | 100706997 | chr12 | 63823534 | BND | MantaBND:1:45588:50637:0:0:0:0 | 0.022913336035048564 | FAIL | 1815 | 0 | 0 | 0 | 40.0 | 0.016129032258064516 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | MUC6 | . | chr11 | 1017890 | chr11_KI270902v1_alt | 82442 | BND | MantaBND:1:122134:122138:2:7:0:0 | 0.019453889781410695 | FAIL | 18 | 0 | 0 | 0 | 37.0 | 0.024971187091817133 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | HLA-DQA1 | . | chr6 | 32637471 | chrHLA-DQA1*04:02 | 782 | BND | MantaBND:1:36078:74187:3:0:0:0 | 0.01767346891390394 | FAIL | 633 | 0 | 0 | 0 | 65.0 | 0.022328548644338118 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | OR5H1 | . | chr3 | 98133162 | chr3 | 98207800 | DUP | MantaDUP:TANDEM:1:41234:41236:0:0:0 | 0.015646406939027607 | FAIL | 0 | 0 | 0 | 0 | 65.0 | 0.015002885170225043 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | ETFA | TYRO3 | chr15 | 76259604 | chr15 | 41577887 | BND | MantaBND:1:145308:156610:0:0:0:1 | 0.015512470496994534 | FAIL | 0 | 825 | 0 | 0 | 40.0 | 0.021141649048625793 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | SCAI | TMEM127 | chr9 | 125093148 | chr2 | 96248657 | BND | MantaBND:1:25492:25493:0:3:0:1 | 0.009852571628589522 | FAIL | 0 | 4 | 0 | 0 | 62.0 | 0.0072152551108057034 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | TUBB8B | . | chr18 | 47880 | chr16 | 90095858 | BND | MantaBND:1:48352:59174:1:0:0:0 | 0.007213511098985113 | FAIL | 4 | 0 | 0 | 0 | 43.0 | 0.015378844711177795 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | HLA-DRB5 | . | chr6 | 32522169 | chrHLA-DRB1*09:21 | 10991 | BND | MantaBND:1:44086:73933:7:0:0:0 | 0.005237681691438911 | FAIL | 1352 | 0 | 0 | 0 | 60.0 | 0.05140845070422535 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | KRTAP5-6 | KRTAP5-8 | chr11 | 1697311 | chr11 | 71538079 | DEL | MantaDEL:1:119185:122235:0:1:0 | 0.0017999032467498036 | FAIL | 33 | 1488 | 0 | 0 | 127.0 | 0.09045310148804547 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | HLA-DQB1 | HLA-DQB2 | chr6 | 32660296 | chr6 | 32756603 | DUP | MantaDUP:TANDEM:1:74267:74275:1:0:0 | 0.0002099892234505725 | FAIL | 249 | 436 | 0 | 0 | 30.0 | 0.0074315751314119995 | 1 | 0 | 0 |
| pos_somatic_004.manta_fusion | CA10 | MLLT3 | chr17 | 51831727 | chr9 | 20414073 | BND | MantaBND:1:46501:105714:1:0:0:0 | 8.900918456066631e-05 | FAIL | 0 | 2 | 0 | 0 | 42.0 | 0.0033647375504710633 | 1 | 1 | 0 |
| pos_somatic_004.manta_fusion | HLA-C | HLA-G | chr6 | 31270913 | chr6 | 29829000 | BND | MantaBND:1:72514:72553:1:0:0:0 | 1.3994212843262482e-05 | FAIL | 0 | 104 | 0 | 0 | 55.0 | 0.0031107920555156735 | 1 | 0 | 0 |
68 rows