File Info
- Filename
- pos_somatic_039.manta_fusion.fusion_calls.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/20_caller_benchmark_revalidation/hd789-modelD-6a21f937/variant_calling/manta_fusion/pos_somatic_039/pos_somatic_039.manta_fusion.fusion_calls.tsv
- Size
- 10.5 KB
- Workflow Run
- sv-benchmark-hd789-modelD-6a21f937
- Published
- Jun 04, 2026 4:11 PM
Content
View in new tab| specimen | gene1 | gene2 | chr1 | pos1 | chr2 | pos2 | sv_type | event_id | score | filter_call | pon_bp1_count | pon_bp2_count | pon_pair_count | cosmic_hit | somaticscore | manual_vaf | is_pass | is_interchrom | is_paralog_of_higher_score_call |
| pos_somatic_039.manta_fusion | ENSG00000241489 | EOLA1 | chrX | 149524096 | chrX | 149546746 | DEL | MantaDEL:0:193855:193857:0:0:0 | 0.9999861477491364 | PASS | 0 | 0 | 0 | 0 | 76.0 | 0.05226480836236934 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ADAMTS18 | VAPA | chr16 | 77342077 | chr18 | 9931832 | BND | MantaBND:0:148101:148102:0:0:0:1 | 0.9999050583275092 | PASS | 0 | 0 | 0 | 0 | 51.0 | 0.044529262086514 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | CACNA1A | GCDH | chr19 | 13208701 | chr19 | 12891359 | DUP | MantaDUP:TANDEM:0:170570:170571:0:1:0 | 0.9996101556986313 | PASS | 15 | 0 | 0 | 0 | 48.0 | 0.012138188608776844 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | MOSMO | ZBTB17 | chr16 | 22075698 | chr1 | 15970019 | BND | MantaBND:0:1469:1472:0:0:0:1 | 0.9995926965989593 | PASS | 406 | 0 | 0 | 0 | 165.0 | 0.12671509281678772 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | CCDC6 | RET | chr10 | 59878857 | chr10 | 43114500 | BND | MantaBND:0:105019:105317:0:0:0:0 | 0.9994829961870971 | PASS | 0 | 6 | 0 | 1 | 187.0 | 0.025810513062637708 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | FAM47C | . | chrX | 37009377 | chr8 | 144118681 | BND | MantaBND:0:188301:188303:0:1:0:1 | 0.9993384667945717 | PASS | 186 | 0 | 0 | 0 | 73.0 | 0.024714828897338403 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | TRAM1L1 | . | chr4 | 117085241 | chr4 | 117085991 | DEL | MantaDEL:0:51122:51122:1:0:0 | 0.9988255711564057 | PASS | 0 | 0 | 0 | 0 | 33.0 | 0.011592741935483871 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ROS1 | SLC34A2 | chr6 | 117337163 | chr4 | 25665007 | BND | MantaBND:0:46537:46538:1:0:0:1 | 0.9977487389948302 | PASS | 2 | 89 | 0 | 0 | 933.0 | 0.033628563520619985 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | CLPSL1 | FKBP5 | chr6 | 35787989 | chr6 | 35701329 | DUP | MantaDUP:TANDEM:0:68187:68189:0:0:0 | 0.9968052763737546 | PASS | 0 | 0 | 0 | 0 | 51.0 | 0.013991163475699559 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | BCL2 | . | chr18 | 63314872 | chr18 | 64623921 | DEL | MantaDEL:0:72901:167691:0:0:0 | 0.9966531139252186 | PASS | 2 | 0 | 0 | 0 | 641.0 | 0.11019257867543447 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | CASP8 | TRAK2 | chr2 | 201236698 | chr2 | 201380664 | DEL | MantaDEL:0:29408:29409:0:1:0 | 0.9952802214574461 | PASS | 0 | 0 | 0 | 0 | 47.0 | 0.037520391517128875 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ARC | . | chr8 | 142613959 | chr8 | 110392594 | DUP | MantaDUP:TANDEM:0:94583:94799:0:1:0 | 0.9943361240020411 | PASS | 0 | 0 | 0 | 0 | 34.0 | 0.006124721603563474 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | HES7 | PLSCR3 | chr17 | 8121596 | chr17 | 7394345 | DEL | MantaDEL:0:156568:156569:0:0:0 | 0.9938236441660565 | PASS | 0 | 0 | 0 | 0 | 128.0 | 0.08716439867598381 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | PABPC1 | PDS5A | chr8 | 100706705 | chr4 | 39973387 | BND | MantaBND:0:46986:46989:0:0:0:1 | 0.9896099842906262 | PASS | 76 | 0 | 0 | 0 | 501.0 | 0.16429772275714505 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | CYP4F22 | ZSWIM4 | chr19 | 15526194 | chr19 | 13830272 | DUP | MantaDUP:TANDEM:0:170680:170681:0:0:0 | 0.9887799228322491 | PASS | 0 | 0 | 0 | 0 | 46.0 | 0.02030456852791878 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | RET | . | chr10 | 43114258 | chr13 | 76366796 | BND | MantaBND:0:105019:105314:0:0:0:0 | 0.9864980984841855 | PASS | 17 | 0 | 0 | 0 | 157.0 | 0.01737619461337967 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | LAPTM4B | . | chr8 | 97816180 | chr1 | 153380076 | BND | MantaBND:0:10277:10278:0:0:0:1 | 0.9826999657552613 | PASS | 10 | 0 | 0 | 0 | 132.0 | 0.08611212898497618 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | SCAI | TMEM127 | chr9 | 125093148 | chr2 | 96248657 | BND | MantaBND:0:23469:23470:0:5:0:0 | 0.9761303555218735 | PASS | 0 | 4 | 0 | 0 | 46.0 | 0.003772937746527182 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | CDKN2B | MTAP | chr9 | 22005935 | chr9 | 21899142 | DEL | MantaDEL:0:96206:96289:0:0:0 | 0.9718785700389386 | PASS | 4 | 0 | 0 | 0 | 503.0 | 0.04581973386894301 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | EP400 | . | chr12 | 131982269 | chr12 | 132132535 | DEL | MantaDEL:0:131320:131321:0:0:0 | 0.9671875912003507 | PASS | 0 | 0 | 0 | 0 | 42.0 | 0.01371571072319202 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | KRT37 | KRT38 | chr17 | 41422807 | chr17 | 41439231 | DUP | MantaDUP:TANDEM:0:159907:159909:1:0:0 | 0.9644478071543445 | PASS | 0 | 0 | 0 | 0 | 324.0 | 0.07427660059239007 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ABTB2 | . | chr11 | 34152559 | chr11 | 34150601 | DUP | MantaDUP:TANDEM:0:114185:114186:0:0:0 | 0.9592012377206036 | PASS | 0 | 0 | 0 | 0 | 33.0 | 0.009580838323353293 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ABHD2 | VAPA | chr15 | 89201199 | chr18 | 9954083 | BND | MantaBND:0:148099:148100:0:1:0:1 | 0.9188815143949239 | PASS | 0 | 0 | 0 | 0 | 51.0 | 0.046486486486486484 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | ENSG00000249141 | LAPTM4B | chr6 | 166920475 | chr8 | 97775791 | BND | MantaBND:0:10282:75861:0:1:0:1 | 0.6678760733808886 | PASS | 0 | 185 | 0 | 0 | 59.0 | 0.06442272891784293 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | ACTB | . | chr7 | 5526915 | chr7 | 118129961 | BND | MantaBND:0:76187:76543:0:0:0:1 | 0.6342062119307151 | PASS | 24 | 0 | 0 | 0 | 68.0 | 0.007505773672055427 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | PABPC3 | . | chr13 | 25096638 | chr3 | 155309434 | BND | MantaBND:0:42314:42316:0:0:0:1 | 0.5867107684127778 | PASS | 0 | 0 | 0 | 0 | 74.0 | 0.0654627539503386 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | REG3A | REG3G | chr2 | 79158365 | chr2 | 79027039 | BND | MantaBND:0:22631:22632:1:0:0:1 | 0.3747067766155649 | PASS | 0 | 0 | 0 | 0 | 135.0 | 0.08557951482479785 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ZDHHC11 | ZDHHC11B | chr5 | 825032 | chr5 | 733755 | DEL | MantaDEL:0:54311:54312:1:0:0 | 0.36757304295396404 | PASS | 0 | 0 | 0 | 0 | 47.0 | 0.048106448311156604 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | FAM131C | . | chr1 | 16059899 | chr1 | 16036647 | DUP | MantaDUP:TANDEM:0:1483:1484:3:0:0 | 0.3601542266062734 | PASS | 2 | 0 | 0 | 0 | 57.0 | 0.027049180327868853 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | PSG6 | PSG9 | chr19 | 42907827 | chr19 | 43259041 | DEL | MantaDEL:0:173593:173594:0:0:0 | 0.3342430844648285 | PASS | 0 | 0 | 0 | 0 | 112.0 | 0.03572730586948596 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | LYZL1 | . | chr10 | 29289134 | chr10 | 30629827 | BND | MantaBND:0:104740:104741:0:0:0:1 | 0.2736917583303794 | PASS | 0 | 0 | 0 | 0 | 110.0 | 0.05813953488372093 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | KDM4E | KDM4F | chr11 | 95025757 | chr11 | 95049334 | DEL | MantaDEL:0:118554:118555:0:0:0 | 0.24803414203248852 | PASS | 0 | 0 | 0 | 0 | 53.0 | 0.0274234693877551 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ADAMTS7 | . | chr15 | 78766184 | chr15 | 82327656 | BND | MantaBND:0:147002:147003:1:0:0:0 | 0.2173371998213598 | PASS | 0 | 0 | 0 | 0 | 56.0 | 0.043044291952588895 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | OR5M3 | . | chr11 | 56470220 | chr11 | 56448815 | BND | MantaBND:0:115259:115260:0:0:0:1 | 0.21311544110186795 | PASS | 0 | 0 | 0 | 0 | 47.0 | 0.017366946778711485 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | OR5H1 | OR5H15 | chr3 | 98132762 | chr3 | 98168712 | DUP | MantaDUP:TANDEM:0:38405:38406:0:0:0 | 0.21091401322686978 | PASS | 2 | 0 | 0 | 0 | 47.0 | 0.012481644640234948 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | PABPC3 | PDS5A | chr13 | 25097758 | chr4 | 39973109 | BND | MantaBND:0:42316:46986:1:0:0:1 | 0.18463712295240153 | PASS | 290 | 0 | 0 | 0 | 48.0 | 0.01098901098901099 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | CYP2D6 | CYP2D7 | chr22 | 42130668 | chr22 | 42144474 | DUP | MantaDUP:TANDEM:0:163472:185972:12:0:0 | 0.15987821576552913 | PASS | 0 | 0 | 0 | 0 | 96.0 | 0.030444389884605943 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | PAGE2 | PAGE2B | chrX | 55091445 | chrX | 55077525 | DUP | MantaDUP:TANDEM:0:189608:189609:0:0:0 | 0.14143783392982573 | PASS | 0 | 0 | 0 | 0 | 45.0 | 0.014042867701404288 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | BMP2K | TRIM37 | chr4 | 78871008 | chr17 | 59012228 | BND | MantaBND:0:49161:49163:0:9:0:1 | 0.07550365713264946 | PASS | 24 | 0 | 0 | 0 | 39.0 | 0.058959920503477974 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | GSTA1 | GSTA2 | chr6 | 52799298 | chr6 | 52757865 | DUP | MantaDUP:TANDEM:0:69580:69581:0:0:0 | 0.06688086652251403 | PASS | 2 | 2 | 0 | 0 | 44.0 | 0.02364864864864865 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | FUT2 | . | chr19 | 48703426 | chr19 | 48680259 | DEL | MantaDEL:0:174468:174469:0:0:0 | 0.06260097268213935 | PASS | 0 | 0 | 0 | 0 | 47.0 | 0.02377003869541183 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | HYDIN | . | chr16 | 70943879 | chr1 | 146771425 | BND | MantaBND:0:9592:9593:0:0:0:1 | 0.05807644760480736 | PASS | 0 | 0 | 0 | 0 | 44.0 | 0.01913536498936924 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | HLA-DQA2 | . | chr6 | 32745962 | chrX | 94552443 | BND | MantaBND:0:67553:67725:0:0:0:0 | 0.04550718160502687 | FAIL | 124 | 0 | 0 | 0 | 67.0 | 0.008620689655172414 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | VKORC1L1 | . | chr7 | 65873490 | chr7 | 65038290 | DUP | MantaDUP:TANDEM:0:24159:79852:0:0:0 | 0.039327276471666284 | FAIL | 0 | 0 | 0 | 0 | 37.0 | 0.006747988580327018 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | OR2L2 | . | chr1 | 248039003 | chr1 | 247991062 | DEL | MantaDEL:0:17500:17501:0:0:0 | 0.03285522956771129 | FAIL | 0 | 0 | 0 | 0 | 48.0 | 0.01570048309178744 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | AQP12A | AQP12B | chr2 | 240692125 | chr2 | 240682838 | BND | MantaBND:0:32204:32205:0:0:0:0 | 0.029528987305275152 | FAIL | 5 | 2 | 0 | 0 | 44.0 | 0.017299969107198023 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | HERC2 | . | chr15 | 28174587 | chr15 | 30818028 | BND | MantaBND:0:10063:142353:0:0:0:0 | 0.022501236549886897 | FAIL | 0 | 0 | 0 | 0 | 43.0 | 0.01092896174863388 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | TUBB8B | . | chr18 | 47784 | chr16 | 90095870 | BND | MantaBND:0:44106:54189:1:0:0:0 | 0.01774834162459395 | FAIL | 4 | 0 | 0 | 0 | 39.0 | 0.020844761382336808 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | SVIL | . | chr10 | 29494999 | chr10 | 30689268 | BND | MantaBND:0:104762:104763:1:0:0:0 | 0.016831745003466486 | FAIL | 0 | 0 | 0 | 0 | 73.0 | 0.044709388971684055 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | HLA-A | . | chr6 | 29948073 | chr6 | 29893076 | DEL | MantaDEL:0:66121:66229:0:0:0 | 0.015550815404986037 | FAIL | 964 | 0 | 0 | 0 | 87.0 | 0.011195606252640473 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ETFA | TYRO3 | chr15 | 76260198 | chr15 | 41570622 | BND | MantaBND:0:133266:143533:4:0:0:1 | 0.010006289746024195 | FAIL | 0 | 808 | 0 | 0 | 44.0 | 0.033112582781456956 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | ADAMTS7 | . | chr15 | 78773114 | chr15 | 77980182 | BND | MantaBND:0:146997:146998:0:0:0:0 | 0.008756860033285655 | FAIL | 0 | 0 | 0 | 0 | 39.0 | 0.013571428571428571 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | HLA-DRB1 | . | chr6 | 32589804 | chr6_GL000253v2_alt | 3855271 | BND | MantaBND:0:67317:67328:0:0:0:0 | 0.006576347925650704 | FAIL | 466 | 0 | 0 | 0 | 57.0 | 0.00468384074941452 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | C1QTNF9 | C1QTNF9B | chr13 | 24316121 | chr13 | 23897047 | BND | MantaBND:0:131950:131951:1:0:0:1 | 0.004673538761975197 | FAIL | 0 | 0 | 0 | 0 | 40.0 | 0.012756909992912827 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | PABPC1 | . | chr8 | 100706989 | chr12 | 63823526 | BND | MantaBND:0:42318:46989:0:0:0:0 | 0.003590702622409633 | FAIL | 1815 | 0 | 0 | 0 | 39.0 | 0.014547160957297044 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | HLA-DQB1 | . | chr6 | 32660017 | chr6_GL000256v2_alt | 4057295 | BND | MantaBND:0:67751:67760:0:0:0:0 | 0.0014969597410463052 | FAIL | 461 | 0 | 0 | 0 | 97.0 | 0.028177833437695678 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | HLA-DRB5 | . | chr6 | 32522144 | chrHLA-DRB1*09:21 | 11105 | BND | MantaBND:0:23706:67444:9:0:0:0 | 0.001024449499005458 | FAIL | 1352 | 0 | 0 | 0 | 52.0 | 0.03123399897593446 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | OR5H1 | . | chr3 | 98133308 | chr3 | 98207759 | DUP | MantaDUP:TANDEM:0:38405:38407:0:0:0 | 0.0005575132581721339 | FAIL | 0 | 0 | 0 | 0 | 46.0 | 0.009477224090492203 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | OR2T8 | . | chr1 | 247921863 | chr1 | 248083965 | BND | MantaBND:0:17486:17487:1:0:0:0 | 0.0004689821832018968 | FAIL | 0 | 0 | 0 | 0 | 35.0 | 0.002170767004341534 | 1 | 0 | 0 |
| pos_somatic_039.manta_fusion | MUC3A | . | chr7 | 100954660 | chrUn_JTFH01000054v1_decoy | 533 | BND | MantaBND:0:82475:82480:26:0:0:0 | 0.00010501027312194917 | FAIL | 159 | 0 | 0 | 0 | 35.0 | 0.011658717541070483 | 1 | 1 | 0 |
| pos_somatic_039.manta_fusion | MUC2 | . | chr11 | 1094660 | chr11_KI270927v1_alt | 166969 | BND | MantaBND:0:107007:111787:0:1:0:0 | 2.2586629510444115e-05 | FAIL | 1859 | 0 | 0 | 0 | 121.0 | 0.050226654578422486 | 1 | 1 | 0 |
62 rows