File Info
- Filename
- pos_somatic_015.manta_fusion.fusion_calls.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/20_caller_benchmark_revalidation/hd789-modelD-6a21f937/variant_calling/manta_fusion/pos_somatic_015/pos_somatic_015.manta_fusion.fusion_calls.tsv
- Size
- 11.7 KB
- Workflow Run
- sv-benchmark-hd789-modelD-6a21f937
- Published
- Jun 04, 2026 4:16 PM
Content
View in new tab| specimen | gene1 | gene2 | chr1 | pos1 | chr2 | pos2 | sv_type | event_id | score | filter_call | pon_bp1_count | pon_bp2_count | pon_pair_count | cosmic_hit | somaticscore | manual_vaf | is_pass | is_interchrom | is_paralog_of_higher_score_call |
| pos_somatic_015.manta_fusion | ENSG00000241489 | EOLA1 | chrX | 149524096 | chrX | 149546746 | DEL | MantaDEL:1:209571:209573:0:0:0 | 0.9999027341868352 | PASS | 0 | 0 | 0 | 0 | 68.0 | 0.03984674329501916 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | RRAS | . | chr19 | 49640004 | chr19 | 43270404 | DUP | MantaDUP:TANDEM:1:187684:187692:0:0:0 | 0.9996342796537369 | PASS | 0 | 0 | 0 | 0 | 83.0 | 0.07984790874524715 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | LILRB1 | LILRB2 | chr19 | 54633037 | chr19 | 54278542 | BND | MantaBND:1:189461:189473:10:5:0:0 | 0.9995169389583644 | PASS | 21 | 56 | 0 | 0 | 99.0 | 0.053418803418803416 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | HES7 | PLSCR3 | chr17 | 8121596 | chr17 | 7394345 | DEL | MantaDEL:1:169950:169951:0:0:0 | 0.9993465371697646 | PASS | 0 | 0 | 0 | 0 | 128.0 | 0.09388038942976357 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | CLPSL1 | FKBP5 | chr6 | 35787989 | chr6 | 35701329 | DUP | MantaDUP:TANDEM:1:74272:74274:0:0:0 | 0.9991904857211166 | PASS | 0 | 0 | 0 | 0 | 56.0 | 0.01896664486592544 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | CCDC6 | RET | chr10 | 59878857 | chr10 | 43114500 | BND | MantaBND:1:114852:115095:0:0:0:0 | 0.9991461819060685 | PASS | 0 | 6 | 0 | 1 | 167.0 | 0.023667442095681196 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | ENSG00000249141 | LAPTM4B | chr6 | 166920475 | chr8 | 97775791 | BND | MantaBND:1:10794:10796:0:3:0:0 | 0.9987729798450864 | PASS | 0 | 185 | 0 | 0 | 60.0 | 0.0665024630541872 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | CASP8 | TRAK2 | chr2 | 201236698 | chr2 | 201380664 | DEL | MantaDEL:1:31475:31476:0:1:0 | 0.9984984677909834 | PASS | 0 | 0 | 0 | 0 | 64.0 | 0.06531531531531531 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | MOSMO | ZBTB17 | chr16 | 22075698 | chr1 | 15970019 | BND | MantaBND:1:1462:1465:0:0:0:1 | 0.9984622204090438 | PASS | 406 | 0 | 0 | 0 | 123.0 | 0.09548724656638326 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | ROS1 | SLC34A2 | chr6 | 117337163 | chr4 | 25665007 | BND | MantaBND:1:50041:50042:1:0:0:0 | 0.9976560345444473 | PASS | 2 | 89 | 0 | 0 | 939.0 | 0.03197004608294931 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | CACNA1A | GCDH | chr19 | 13208701 | chr19 | 12891359 | DUP | MantaDUP:TANDEM:1:184558:184559:0:3:0 | 0.9973736704126641 | PASS | 15 | 0 | 0 | 0 | 46.0 | 0.011299435028248588 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | FAM47C | . | chrX | 37009377 | chr8 | 144118681 | BND | MantaBND:1:203059:203179:0:0:0:1 | 0.996131973136596 | PASS | 186 | 0 | 0 | 0 | 85.0 | 0.031068524970963997 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | BCL2 | . | chr18 | 63314872 | chr18 | 64623921 | DEL | MantaDEL:1:46869:181617:0:0:0 | 0.9960805517773061 | PASS | 2 | 0 | 0 | 0 | 829.0 | 0.14132674083230326 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | EP400 | . | chr12 | 131982269 | chr12 | 132132535 | DEL | MantaDEL:1:143103:143104:0:0:0 | 0.9957486572999055 | PASS | 0 | 0 | 0 | 0 | 37.0 | 0.008305647840531562 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | TRAM1L1 | . | chr4 | 117085241 | chr4 | 117085991 | DEL | MantaDEL:1:55325:55325:1:0:0 | 0.9943394504774621 | PASS | 0 | 0 | 0 | 0 | 38.0 | 0.018011527377521614 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | RET | . | chr10 | 43114258 | chr13 | 76366796 | BND | MantaBND:1:114852:115094:0:0:0:0 | 0.9890815470378409 | PASS | 17 | 0 | 0 | 0 | 193.0 | 0.023532774390243903 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | ZSCAN10 | . | chr16 | 3089841 | chr16 | 3082611 | DUP | MantaDUP:TANDEM:1:162624:162625:0:0:0 | 0.9884633389106126 | PASS | 11 | 0 | 0 | 0 | 33.0 | 0.01664145234493192 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | ADAMTS18 | VAPA | chr16 | 77342077 | chr18 | 9931832 | BND | MantaBND:1:161223:161224:0:0:0:1 | 0.9786299113379039 | PASS | 0 | 0 | 0 | 0 | 59.0 | 0.06678700361010831 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | TVP23B | TVP23C | chr17 | 18799022 | chr17 | 15545792 | BND | MantaBND:1:170692:170693:0:0:0:0 | 0.9738482906872189 | PASS | 0 | 0 | 0 | 0 | 46.0 | 0.022675736961451247 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | ABTB2 | . | chr11 | 34152559 | chr11 | 34150601 | DUP | MantaDUP:TANDEM:1:124585:124586:0:0:0 | 0.9699808155386813 | PASS | 0 | 0 | 0 | 0 | 35.0 | 0.012396694214876033 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | CDKN2B | MTAP | chr9 | 22005935 | chr9 | 21899142 | DEL | MantaDEL:1:79252:105416:0:0:0 | 0.9505422416748444 | PASS | 4 | 0 | 0 | 0 | 381.0 | 0.03295260601286596 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | FARS2 | RPP40 | chr6 | 5265176 | chr6 | 4998750 | DEL | MantaDEL:1:70627:70628:0:1:0 | 0.9473018994694631 | PASS | 0 | 0 | 0 | 0 | 35.0 | 0.00796812749003984 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | PABPC1 | PDS5A | chr8 | 100706705 | chr4 | 39973387 | BND | MantaBND:1:50558:50561:0:0:0:1 | 0.9314206239132435 | PASS | 76 | 0 | 0 | 0 | 551.0 | 0.19492314857941315 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | KRT37 | KRT38 | chr17 | 41422807 | chr17 | 41439231 | DUP | MantaDUP:TANDEM:1:173430:173431:1:0:0 | 0.9282621915333776 | PASS | 0 | 0 | 0 | 0 | 349.0 | 0.07975064488392089 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | DCDC1 | ESPL1 | chr11 | 31344978 | chr12 | 53290879 | BND | MantaBND:1:136601:136955:0:0:0:0 | 0.9142800510056127 | PASS | 0 | 0 | 0 | 0 | 44.0 | 0.022099447513812154 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | GSTA1 | GSTA2 | chr6 | 52799261 | chr6 | 52757797 | DUP | MantaDUP:TANDEM:1:75670:75671:0:0:0 | 0.8524138038862838 | PASS | 2 | 0 | 0 | 0 | 40.0 | 0.02146690518783542 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | KDM4E | KDM4F | chr11 | 95025785 | chr11 | 95049307 | DEL | MantaDEL:1:129327:129328:0:0:0 | 0.8320723166156603 | PASS | 0 | 0 | 0 | 0 | 46.0 | 0.023862788963460103 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | PABPC3 | . | chr13 | 25096624 | chr3 | 155309498 | BND | MantaBND:1:45455:45456:0:0:0:0 | 0.8299771592311895 | PASS | 0 | 0 | 0 | 0 | 72.0 | 0.06382978723404255 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | OR5M3 | . | chr11 | 56470086 | chr11 | 56448792 | BND | MantaBND:1:125835:125836:0:0:0:0 | 0.7424258143401783 | PASS | 0 | 0 | 0 | 0 | 45.0 | 0.012025316455696202 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | CYP4F22 | ZSWIM4 | chr19 | 15526194 | chr19 | 13830272 | DUP | MantaDUP:TANDEM:1:184666:184667:0:0:0 | 0.680253500930795 | PASS | 0 | 0 | 0 | 0 | 39.0 | 0.013847675568743818 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | BMP8A | BMP8B | chr1 | 39523026 | chr1 | 39763314 | BND | MantaBND:1:3858:3859:1:0:0:1 | 0.5508586591788158 | PASS | 0 | 0 | 0 | 0 | 44.0 | 0.050793650793650794 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | MFF | PDE6A | chr2 | 227352514 | chr5 | 149932226 | BND | MantaBND:1:33338:33344:1:0:0:1 | 0.5397172986538011 | PASS | 116 | 0 | 0 | 0 | 65.0 | 0.02857142857142857 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | LYZL1 | . | chr10 | 29289181 | chr10 | 30629840 | BND | MantaBND:1:114433:114434:0:0:0:1 | 0.40545668904536863 | PASS | 0 | 0 | 0 | 0 | 99.0 | 0.07226107226107226 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | ADAMTS7 | . | chr15 | 78766284 | chr15 | 82327624 | BND | MantaBND:1:160018:160134:1:0:0:1 | 0.39089036399706795 | PASS | 0 | 0 | 0 | 0 | 59.0 | 0.029245283018867925 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | PSG6 | PSG9 | chr19 | 42907852 | chr19 | 43259093 | DEL | MantaDEL:1:187655:187656:0:0:0 | 0.389322405367933 | PASS | 0 | 0 | 0 | 0 | 73.0 | 0.02185792349726776 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | HLA-DQA2 | . | chr6 | 32746305 | chr10 | 119973482 | BND | MantaBND:1:71901:73788:0:0:0:1 | 0.339104914822501 | PASS | 83 | 0 | 0 | 0 | 56.0 | 0.0066212985102078355 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | CYP2D6 | CYP2D7 | chr22 | 42130613 | chr22 | 42144517 | DUP | MantaDUP:TANDEM:1:200562:200565:8:0:0 | 0.24751801938699747 | PASS | 0 | 0 | 0 | 0 | 78.0 | 0.03258145363408521 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | REG3A | REG3G | chr2 | 79158337 | chr2 | 79027076 | BND | MantaBND:1:24041:24042:1:0:0:0 | 0.22679370690998799 | PASS | 0 | 0 | 0 | 0 | 118.0 | 0.06653426017874876 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | OR5H1 | OR5H15 | chr3 | 98132745 | chr3 | 98168753 | DUP | MantaDUP:TANDEM:1:41181:41182:1:0:0 | 0.22410651054301214 | PASS | 2 | 0 | 0 | 0 | 47.0 | 0.011795543905635648 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | VKORC1L1 | . | chr7 | 65873530 | chr7 | 65038176 | DUP | MantaDUP:TANDEM:1:25663:87039:0:0:0 | 0.18221722153903197 | PASS | 0 | 0 | 0 | 0 | 41.0 | 0.007980845969672785 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | HLA-DQA1 | . | chr6 | 32642146 | chrX | 94552471 | BND | MantaBND:1:73586:73770:0:0:0:1 | 0.16674559293843236 | PASS | 176 | 0 | 0 | 0 | 59.0 | 0.012813941568426449 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | HLA-DRB1 | HLA-DRB5 | chr6 | 32581597 | chr6 | 32518926 | DUP | MantaDUP:TANDEM:1:24103:43248:2:0:0 | 0.14414191804097476 | PASS | 553 | 123 | 0 | 0 | 59.0 | 0.13620213185945518 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | KRT6B | KRT6C | chr12 | 52451784 | chr12 | 52473630 | DEL | MantaDEL:1:136836:136840:0:0:0 | 0.1426019699953583 | PASS | 10 | 3 | 0 | 0 | 39.0 | 0.013444474321054048 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | C1QTNF9 | C1QTNF9B | chr13 | 24316168 | chr13 | 23896538 | BND | MantaBND:1:143747:143748:1:0:0:1 | 0.12102322794152244 | PASS | 0 | 0 | 0 | 0 | 42.0 | 0.012861736334405145 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | MLLT3 | TCF4 | chr9 | 20414301 | chr18 | 55586156 | BND | MantaBND:1:15601:105297:1:4:0:1 | 0.11976374215083455 | PASS | 836 | 0 | 0 | 0 | 49.0 | 0.01603109059995142 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | CLCNKB | FAM131C | chr1 | 16049842 | chr1 | 16059604 | DEL | MantaDEL:1:1472:1481:1:0:0 | 0.09146155778451369 | PASS | 0 | 3 | 0 | 0 | 40.0 | 0.01839080459770115 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | FAM131C | . | chr1 | 16059958 | chr1 | 16036615 | DUP | MantaDUP:TANDEM:1:1472:1473:3:0:0 | 0.08290180666240086 | PASS | 2 | 0 | 0 | 0 | 74.0 | 0.0475 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | PABPC3 | PDS5A | chr13 | 25097731 | chr4 | 39973076 | BND | MantaBND:1:45456:50558:2:0:0:1 | 0.07968124728416379 | PASS | 290 | 0 | 0 | 0 | 58.0 | 0.010951979780960405 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | ENOX1 | TYRO3 | chr13 | 43495569 | chr15 | 41561128 | BND | MantaBND:1:145097:145098:1:0:0:1 | 0.07067427520651068 | PASS | 0 | 733 | 0 | 0 | 38.0 | 0.024498886414253896 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | VCX2 | VCX3B | chrX | 8170127 | chrX | 8466296 | BND | MantaBND:1:201570:201571:0:1:0:0 | 0.06316966089968631 | PASS | 56 | 478 | 0 | 0 | 137.0 | 0.037224538415723644 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | OR2L2 | . | chr1 | 248038972 | chr1 | 247991065 | DEL | MantaDEL:1:18483:18484:0:0:0 | 0.043228493824381035 | FAIL | 0 | 0 | 0 | 0 | 52.0 | 0.01889763779527559 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | PABPC1 | PABPC3 | chr8 | 100706566 | chr13 | 25097564 | BND | MantaBND:1:45456:50561:2:0:0:1 | 0.03940788961216198 | FAIL | 177 | 433 | 0 | 0 | 46.0 | 0.004009163802978236 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | TUBB8B | . | chr18 | 47737 | chr16 | 90095786 | BND | MantaBND:1:47460:58863:1:0:0:0 | 0.0298870268415666 | FAIL | 4 | 0 | 0 | 0 | 39.0 | 0.025420077552778975 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | FUT2 | . | chr19 | 48703328 | chr19 | 48680320 | DEL | MantaDEL:1:188558:188559:0:0:0 | 0.02976648250832432 | FAIL | 2 | 0 | 0 | 0 | 59.0 | 0.03301540719002201 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | HLA-DRB1 | . | chr6 | 32589787 | chr6_GL000253v2_alt | 3855237 | BND | MantaBND:1:73304:73315:0:0:0:1 | 0.028332763117726322 | FAIL | 859 | 0 | 0 | 0 | 58.0 | 0.007849293563579277 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | KRT6A | KRT6B | chr12 | 52491780 | chr12 | 52450488 | DUP | MantaDUP:TANDEM:1:136836:136839:1:0:0 | 0.026355422576393492 | FAIL | 0 | 2 | 0 | 0 | 50.0 | 0.010080645161290322 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | DHRS4 | DHRS4L2 | chr14 | 23966593 | chr14 | 24001515 | DUP | MantaDUP:TANDEM:1:148514:148515:1:0:0 | 0.026295991294166217 | FAIL | 0 | 0 | 0 | 0 | 36.0 | 0.02321724709784411 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | HLA-A | . | chr6 | 29948173 | chr6 | 29893018 | DEL | MantaDEL:1:3562:72275:0:0:0 | 0.01739701954067025 | FAIL | 964 | 0 | 0 | 0 | 100.0 | 0.011713735558408215 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | PAGE2 | PAGE2B | chrX | 55091467 | chrX | 55077506 | DUP | MantaDUP:TANDEM:1:204539:204540:0:0:0 | 0.015256867215411609 | FAIL | 0 | 0 | 0 | 0 | 63.0 | 0.032133676092544985 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | PABPC3 | . | chr13 | 25097227 | chr12 | 63823169 | BND | MantaBND:1:45456:45460:0:0:0:0 | 0.013087219066142993 | FAIL | 590 | 0 | 0 | 0 | 51.0 | 0.011870388193776067 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | PRAMEF18 | PRAMEF19 | chr1 | 13224823 | chr1 | 13370840 | DUP | MantaDUP:TANDEM:1:1237:1238:0:0:0 | 0.009733837879731594 | FAIL | 7 | 0 | 0 | 0 | 45.0 | 0.02297383535417996 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | SCAI | TMEM127 | chr9 | 125093148 | chr2 | 96248657 | BND | MantaBND:1:24930:24931:0:3:0:1 | 0.007793094753244752 | FAIL | 0 | 4 | 0 | 0 | 58.0 | 0.005454284483995981 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | ETFA | TYRO3 | chr15 | 76260227 | chr15 | 41570648 | BND | MantaBND:1:145099:156361:3:0:0:1 | 0.0065413807011682834 | FAIL | 0 | 808 | 0 | 0 | 49.0 | 0.0435244161358811 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | HLA-B | HLA-C | chr6 | 31355907 | chr6 | 31270738 | DUP | MantaDUP:TANDEM:1:72023:72027:5:0:0 | 0.004559743100013069 | FAIL | 0 | 2 | 0 | 0 | 42.0 | 0.012226512226512226 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | OR5H1 | . | chr3 | 98133283 | chr3 | 98207791 | DUP | MantaDUP:TANDEM:1:41181:41183:1:0:0 | 0.0031859348371496865 | FAIL | 0 | 0 | 0 | 0 | 54.0 | 0.012215252558600198 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | CA10 | TBP | chr17 | 51831718 | chr6 | 170562224 | BND | MantaBND:1:45124:82923:1:0:0:0 | 0.0022079632372619153 | FAIL | 0 | 4 | 0 | 0 | 42.0 | 0.011834319526627219 | 1 | 1 | 0 |
| pos_somatic_015.manta_fusion | KRTAP5-1 | KRTAP5-9 | chr11 | 1584644 | chr11 | 71548701 | BND | MantaBND:1:122014:122015:0:4:0:0 | 0.0010603065891416038 | FAIL | 1094 | 0 | 0 | 0 | 41.0 | 0.02490842490842491 | 1 | 0 | 0 |
| pos_somatic_015.manta_fusion | TBP | TCF4 | chr6 | 170562231 | chr18 | 55586186 | BND | MantaBND:1:15601:82923:1:0:0:0 | 0.0008180936683877469 | FAIL | 4 | 0 | 0 | 0 | 37.0 | 0.009081735620585268 | 1 | 1 | 0 |
69 rows