File Info
- Filename
- seracare_20pct_rep2.manta_fusion.fusion_calls.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/20_caller_benchmark_revalidation/seracare-modelD-6a21f937/variant_calling/manta_fusion/seracare_20pct_rep2/seracare_20pct_rep2.manta_fusion.fusion_calls.tsv
- Size
- 1.1 KB
- Workflow Run
- sv-benchmark-seracare-modelD-6a21f937
- Published
- Jun 04, 2026 4:40 PM
Content
View in new tab| specimen | gene1 | gene2 | chr1 | pos1 | chr2 | pos2 | sv_type | event_id | score | filter_call | pon_bp1_count | pon_bp2_count | pon_pair_count | cosmic_hit | somaticscore | manual_vaf | is_pass | is_interchrom | is_paralog_of_higher_score_call |
| seracare_20pct_rep2.manta_fusion | CD74 | ROS1 | chr5 | 150404544 | chr6 | 117326072 | BND | MantaBND:1:2011:44697:0:2:0:1 | 0.9992373193218576 | PASS | 3 | 1926 | 0 | 1 | 512.0 | 0.03886348791639451 | 1 | 1 | 0 |
| seracare_20pct_rep2.manta_fusion | ALK | EML4 | chr2 | 29224389 | chr2 | 42295576 | BND | MantaBND:1:18759:36666:0:0:0:1 | 0.9973793586934977 | PASS | 24 | 0 | 0 | 1 | 649.0 | 0.03357712765957447 | 1 | 0 | 0 |
| seracare_20pct_rep2.manta_fusion | BICC1 | FGFR2 | chr10 | 58696603 | chr10 | 121480476 | BND | MantaBND:1:5603:211909:0:0:0:0 | 0.9941990798533614 | PASS | 0 | 3 | 0 | 0 | 302.0 | 0.019418812835697564 | 1 | 0 | 1 |
| seracare_20pct_rep2.manta_fusion | NCOA4 | RET | chr10 | 46011572 | chr10 | 43115145 | BND | MantaBND:1:36832:209820:0:1:0:0 | 0.9038441895353596 | PASS | 0 | 5 | 0 | 1 | 295.0 | 0.022911526260133944 | 1 | 0 | 0 |
| seracare_20pct_rep2.manta_fusion | MUC3A | . | chr7 | 100956100 | chrUn_JTFH01000054v1_decoy | 3975 | BND | MantaBND:1:140183:167006:20:0:0:0 | 0.001517964636747356 | FAIL | 332 | 0 | 0 | 0 | 151.0 | 0.046703296703296704 | 1 | 1 | 0 |
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