Error executing process > 'COPY_INPUT_TO_OUTDIR (copy_input)'

Caused by:
  Process `COPY_INPUT_TO_OUTDIR (copy_input)` terminated with an error exit status (143)


Command executed:

  mkdir -p input_sheets
  
  # Copy samplesheet to input_sheets/ (same filename)
  if [ -f "sm_testing/cgp_rna_exp0022_v4_v2.csv" ]; then
      cp "sm_testing/cgp_rna_exp0022_v4_v2.csv" "input_sheets/"
  else
      echo "Samplesheet not found: sm_testing/cgp_rna_exp0022_v4_v2.csv" >&2
      exit 1
  fi
  
  # Copy metadata.csv if present
  metadata_found=false
  for pattern in "metadata" "metadata.csv" "Metadata" "Metadata.csv" "METADATA" "METADATA.CSV"; do
      if [ -f "sm_testing/${pattern}" ]; then
          echo "Metadata file found: ${pattern}, copying to input_sheets/metadata.csv"
          cp "sm_testing/${pattern}" "input_sheets/metadata.csv"
          metadata_found=true
          break
      fi
  done
  
  if [ "$metadata_found" = false ]; then
      metadata_file=$(find "sm_testing" -maxdepth 1 -iname "*metadata*" -type f 2>/dev/null | head -1)
      if [ -n "$metadata_file" ]; then
          echo "Metadata file found (case-insensitive): $(basename $metadata_file), copying to input_sheets/metadata.csv"
          cp "$metadata_file" "input_sheets/metadata.csv"
      else
          echo "No metadata file found in sm_testing"
      fi
  fi

Command exit status:
  143

Command output:
  (empty)

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/c2b80bd44cbd0391c7890ced18897c

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/pandas:1.5.2

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line