Error executing process > 'NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (rna_s1221_S42)'

Caused by:
  No such variable: arriba_fusions -- Check script 'modules/local/vcf_collect/main.nf' at line: 25


Source block:
  def prefix = task.ext.prefix ?: "${meta.id}"
  def args = task.ext.args ?: ''
  """
  vcf_collect.py \\
  --fusioninspector $fusioninspector_tsv \\
  --fusionreport $fusionreport_report \\
  --fusioninspector_gtf $fusioninspector_gtf_tsv \\
  --fusionreport_csv $fusionreport_csv \\
  --hgnc $hgnc_ref \\
  --sample ${prefix} \\
  --out ${prefix}_fusion_data.vcf \\
  --arriba_fusions $arriba_fusions \\
  $args
  
  sort_fusion_vcf.py \\
  --input ${prefix}_fusion_data.vcf
  
  gzip ${prefix}_fusion_data.vcf
  
  cat <<-END_VERSIONS > versions.yml
  "${task.process}":
      python: \$(python --version | sed 's/Python //g')
      HGNC DB retrieval: \$(cat $hgnc_date)
  END_VERSIONS
  """

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/pandas:1.5.2

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`