File Info
- Filename
- multiqc_general_stats.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/dev_rna_exp0022/nfcore_rnafusion_test_vcf_sort_mateids1_smr6/QC/multiqc/multiqc_data/multiqc_general_stats.tsv
- Size
- 2.0 KB
- Workflow Run
- test_vcf_sort_mateids1_smr6
- Published
- Mar 03, 2026 12:55 PM
Content
View in new tab| sample_id | READS | FRAC_UNMAPPED | UNIQUE_READS | FRAC_DUPES | FRAC_READS_ON_TARGET | FRAC_READS_OFF_TARGET | N_Q30 | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | GC_BIAS | TOTAL_READS | EXPECTED_DISTINCT | IS_CONTAMINATED | CONTAMINATION_PCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | PCT_MITO_TPM | PCT_RIBO_TPM | PCT_HK_TPM | PCT_MALE_TPM | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | UNIQUELY_MAPPED | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| rna_s1221_S42 | 19856016.0 | 0.004131 | 15914334.0 | 0.198513 | 0.936205 | 0.058641 | 0.984906 | 32.879367 | 5.0 | 0.281841 | 0.079397 | 0.0 | 9999000000.0 | 52972841.0 | No | 0.0 | 176.1 | 161.0 | 0.01 | 4.72 | 2.83 | 0.0 | 0.01 | 11.33 | 3.21 | 0.0 | 258 | 672.789225 | 0.199337 | 0.0867 | 95.2411 | 81.3236844474281 | 94.32 | 9364404.0 | 13.8514 | 0.983935 | 2704701920.0 | 19856016.0 | 0.533217 | 99.28008 | 36.821505 | |||||||||||||||
| rna_s1221_S42_1 | 176.1 | 96.38390702344317 | 9569002.0 | 58.07204865866036 | 52.0 | 150.0 | 150 | 27.27272727272727 | 10000000.0 | |||||||||||||||||||||||||||||||||||||||||||||||
| rna_s1221_S42_2 | 52.30277809172467 | 53.0 | 150.0 | 150 | 18.181818181818183 | 10000000.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| rna_s1221_S42_trimmed_1 | 58.20935855150871 | 53.0 | 138.4183874549658 | 150 | 18.181818181818183 | 9928008.0 | 58.20935855150871 | 53.0 | 138.4183874549658 | 150 | 18.181818181818183 | 9928008.0 | ||||||||||||||||||||||||||||||||||||||||||||
| rna_s1221_S42_trimmed_2 | 52.476350059504426 | 53.0 | 138.4393835097635 | 150 | 9.090909090909092 | 9928008.0 | 52.476350059504426 | 53.0 | 138.4393835097635 | 150 | 9.090909090909092 | 9928008.0 |
6 rows