rna_s1221_S42_seqtool_mqc.tsv

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Filename: rna_s1221_S42_seqtool_mqc.tsv
Full Path: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/dev_rna_exp0022/nfcore_rnafusion_test_vcf_sort_mateids1_smr8/QC/seqtool/rna_s1221_S42_seqtool_mqc.tsv
Size: 2.3 KB
Workflow Run: test_vcf_sort_mateids1_smr8
Published: Mar 03, 2026 12:51 PM

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#id: 'seqtools_metrics'

#plot_type: 'generalstats'

#pconfig:

# reads:

# namespace: 'SeqTools'

# title: 'Reads'

# description: 'SeqTools Reads'

# format: '{:,.0f}'

# min: 0

# frac_unmapped:

# namespace: 'SeqTools'

# title: 'Frac Unmapped'

# description: 'SeqTools Frac Unmapped'

# format: '{:,.2f}'

# unique_reads:

# namespace: 'SeqTools'

# title: 'Unique Reads'

# description: 'SeqTools Unique Reads'

# format: '{:,.0f}'

# min: 0

# frac_dupes:

# namespace: 'SeqTools'

# title: 'Frac Dupes'

# description: 'SeqTools Frac Dupes'

# format: '{:,.2f}'

# frac_reads_on_target:

# namespace: 'SeqTools'

# title: 'Frac Reads On Target'

# description: 'SeqTools Frac Reads On Target'

# format: '{:,.0f}'

# min: 0

# frac_reads_off_target:

# namespace: 'SeqTools'

# title: 'Frac Reads Off Target'

# description: 'SeqTools Frac Reads Off Target'

# format: '{:,.0f}'

# min: 0

# n_q30:

# namespace: 'SeqTools'

# title: 'N Q30'

# description: 'SeqTools N Q30'

# format: '{:,.2f}'

# mean_depth:

# namespace: 'SeqTools'

# title: 'Mean Depth'

# description: 'SeqTools Mean Depth'

# format: '{:,.2f}'

# q50_depth:

# namespace: 'SeqTools'

# title: 'Q50 Depth'

# description: 'SeqTools Q50 Depth'

# format: '{:,.2f}'

# frac_bases_gt30x:

# namespace: 'SeqTools'

# title: 'Frac Bases Gt30X'

# description: 'SeqTools Frac Bases Gt30X'

# format: '{:,.0f}'

# min: 0

# frac_bases_gt100x:

# namespace: 'SeqTools'

# title: 'Frac Bases Gt100X'

# description: 'SeqTools Frac Bases Gt100X'

# format: '{:,.0f}'

# min: 0

# gc_bias:

# namespace: 'SeqTools'

# title: 'GC Bias'

# description: 'Ratio of high GC (63-100%) to low GC (0-43%) reads'

# format: '{:,.3f}'

# min: 0

# scale: 'RdYlGn'

Sample

reads

frac_unmapped

unique_reads

frac_dupes

frac_reads_on_target

frac_reads_off_target

n_q30

mean_depth

q50_depth

frac_bases_gt30x

frac_bases_gt100x

gc_bias

rna_s1221_S42

19856016

0.004131

15914334

0.198513

0.936205

0.058641

0.984906

32.879367

5.0

0.281841

0.079397

0.0

73 rows