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ae_evidence_all.tsv
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truth_bam_evidence_NORMAL_8ae465fc-0519-0421
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May 18, 2026 9:28 PM

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sample gene1 gene2 chr1 pos1 chr2 pos2 sv_type event_id label ae_discordant_pairs ae_split_reads ae_total_depth_bp1 ae_total_depth_bp2 hg19_chr1 hg19_pos1 hg19_chr2 hg19_pos2 ae_total_support min_depth evaluability bam_verdict
659_bKP LMNA NTRK1 chr1 156138181 chr1 156874589 DEL MantaDEL:5106:0:1:0:0:0 TRUTH 0 0 641 6253 1 156107972 1 156844381 0 641 EVALUABLE BAM_REFUTED
659_7h MXRA8 ANKS1B chr1 1355675 chr12 98947861 BND MantaBND:2:52:57:0:0:0:1 TRUTH 0 0 711 1 1 1291055 12 99341639 0 1 UNEVALUABLE UNEVALUABLE
659_7h PLCH2 INTERGENIC chr1 2480286 chr2 220591424 BND MantaBND:119:0:1:0:0:0:1 TRUTH 0 0 815 0 1 2411725 2 221456145 0 0 UNEVALUABLE UNEVALUABLE
659_7h F5 INTERGENIC chr1 169530860 chr2 20664045 BND MantaBND:2795:0:1:0:0:0:1 TRUTH 0 0 498 1 1 169500098 2 20863805 0 1 UNEVALUABLE UNEVALUABLE
659_7h WDR26 TXN2 chr1 224418298 chr22 36480831 BND MantaBND:3517:5:7:0:0:0:0 TRUTH 0 0 518 785 1 224606000 22 36876878 0 518 EVALUABLE BAM_REFUTED
659_7h WDR26 INTERGENIC chr1 224418368 chr13 57242424 BND MantaBND:3517:6:7:0:0:0:1 TRUTH 0 0 518 2 1 224606070 13 57816558 0 2 UNEVALUABLE UNEVALUABLE
659_7h RYR2 KIAA0368 chr1 237556807 chr9 111437027 BND MantaBND:3738:0:1:0:0:0:1 TRUTH 0 0 4 447 1 237720107 9 114199307 0 4 UNEVALUABLE UNEVALUABLE
659_7h ADSS SPTLC2 chr1 244451760 chr14 77605622 BND MantaBND:3808:0:1:0:0:0:1 TRUTH 0 0 523 0 1 244615062 14 78071965 0 0 UNEVALUABLE UNEVALUABLE
659_7h PXDN INTERGENIC chr2 1643459 chr19 39612108 BND MantaBND:3913:0:1:0:0:0:0 TRUTH 0 0 661 0 2 1647231 19 40102748 0 0 UNEVALUABLE UNEVALUABLE
659_7h ASAP2 INTERGENIC chr2 9388486 chr11 1318780 BND MantaBND:3983:0:1:0:0:0:0 TRUTH 0 0 989 8 2 9528615 11 1340010 0 8 UNEVALUABLE UNEVALUABLE
659_7h MLTK INTERGENIC chr2 173266599 chr12 88455665 BND MantaBND:5629:0:5:0:0:0:1 TRUTH 0 0 1807 3 2 174131327 12 88849442 0 3 UNEVALUABLE UNEVALUABLE
659_7h MLTK PSMA1 chr2 173266604 chr11 14639656 BND MantaBND:5629:0:6:0:0:0:1 TRUTH 0 0 1798 2 2 174131332 11 14661202 0 2 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC PRDM11 chr2 177568675 chr11 45224989 BND MantaBND:5586:2:3:0:0:0:1 TRUTH 0 0 4 1603 2 178433403 11 45246540 0 4 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC ZNF462 chr3 907462 chr9 106924714 BND MantaBND:6392:2:4:0:0:0:0 TRUTH 0 0 0 2298 3 949145 9 109686995 0 0 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC WDR11 chr3 5743966 chr10 120906505 BND MantaBND:6437:2:3:0:0:0:1 TRUTH 0 0 2 1892 3 5785653 10 122666017 0 2 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC RBBP8NL chr3 145098485 chr20 62412847 BND MantaBND:8481:0:2:0:0:0:0 TRUTH 0 0 2 840 3 144816265 20 60987903 0 2 UNEVALUABLE UNEVALUABLE
659_7h STPG2 NTRK3 chr4 97818248 chr15 87978860 BND MantaBND:10198:0:1:0:0:0:0 TRUTH 0 0 4 5370 4 98739399 15 88522091 0 4 UNEVALUABLE UNEVALUABLE
659_7h SYNPO2 DLGAP4 chr4 118939288 chr20 36432243 BND MantaBND:2:7387:7391:0:0:0:0 TRUTH 0 0 1 2855 4 119860443 20 35060646 0 1 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC PTPN6 chr7 22553304 chr12 6956476 BND MantaBND:1150:2:5:0:0:0:1 TRUTH 0 0 3 811 7 22592923 12 7065639 0 3 UNEVALUABLE UNEVALUABLE
659_7h JAZF1 FPR1 chr7 28073178 chr19 51746138 BND MantaBND:831:1:2:0:0:0:1 TRUTH 0 0 0 1369 7 28112797 19 52249391 0 0 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC NTRK3 chr8 63884889 chr15 87979086 BND MantaBND:10198:1:2:0:0:0:1 TRUTH 0 0 0 4600 8 64797446 15 88522317 0 0 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC C11orf68 chr8 77228335 chr11 65917728 BND MantaBND:19631:3:4:0:0:0:1 TRUTH 0 0 5 2019 8 78140571 11 65685199 0 5 UNEVALUABLE UNEVALUABLE
659_7h ADAMTSL1 AC104534.3 chr9 18808856 chr19 38831473 BND MantaBND:335:1:2:0:0:0:0 TRUTH 0 0 1 1011 9 18808854 19 39322113 0 1 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC RPH3A chr9 119652016 chr12 112865419 BND MantaBND:18788:4:5:0:0:0:1 TRUTH 0 0 3 429 9 122414294 12 113303224 0 3 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC BRCA2 chr10 38081756 chr13 32320809 BND MantaBND:559:1:4:0:0:0:1 TRUTH 0 0 0 5429 10 38370684 13 32894946 0 0 UNEVALUABLE UNEVALUABLE
659_7h CC2D2B FAM175B chr10 96012605 chr10 124826812 DUP MantaDUP:TANDEM:10776:3:4:0:0:0 TRUTH 0 0 240 427 10 97772362 10 126515381 0 240 EVALUABLE BAM_REFUTED
659_7h PTGDR2 INTERGENIC chr11 60852671 chr11 110367385 DEL MantaDEL:5062:3:12:0:0:0 TRUTH 0 0 1302 4 11 60620144 11 110238110 0 4 UNEVALUABLE UNEVALUABLE
659_7h MIPEP C19orf44 chr13 23822736 chr19 16503346 BND MantaBND:10176:1:4:0:0:0:1 TRUTH 0 0 4 820 13 24396875 19 16614157 0 4 UNEVALUABLE UNEVALUABLE
659_7h BRCA2 INTERGENIC chr13 32320594 chr13 86063540 INV MantaINV:559:10:12:0:0:0 TRUTH 0 0 5654 0 13 32894731 13 86637675 0 0 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC GIPC3 chr13 107072925 chr19 3591166 BND MantaBND:10897:2:3:0:0:0:0 TRUTH 0 0 0 3027 13 107725273 19 3591164 0 0 UNEVALUABLE UNEVALUABLE
659_7h FGF7 NDUFV3 chr15 49458391 chr21 42908931 BND MantaBND:1575:2:8:0:0:0:1 TRUTH 0 0 0 481 15 49750588 21 44329041 0 0 UNEVALUABLE UNEVALUABLE
659_7h CLEC16A ERBB2 chr16 11126205 chr17 39725049 BND MantaBND:2:5570:5636:0:0:0:1 TRUTH 0 0 939 2688 16 11220062 17 37881302 0 939 EVALUABLE BAM_REFUTED
659_7h C19orf44 NHSL2 chr19 16503183 chrX 72063994 BND MantaBND:10176:1:5:0:0:0:1 TRUTH 0 0 820 1 19 16613994 X 71283844 0 1 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC DLGAP4 chr19 24334258 chr20 36432026 BND MantaBND:2:7387:7390:0:0:0:0 TRUTH 0 0 1 2420 19 24517060 20 35060429 0 1 UNEVALUABLE UNEVALUABLE
659_7h INTERGENIC JPH2 chr20 39557591 chr20 44115832 INV MantaINV:36529:0:1:0:0:0 TRUTH 0 0 22 1265 20 38186234 20 42744472 0 22 EVALUABLE BAM_REFUTED
659_bXS INTERGENIC DNAH5 chr5 8394369 chr5 13766156 DUP MantaDUP:TANDEM:11563:0:1:0:0:0 TRUTH 0 0 0 672 5 8394482 5 13766265 0 0 UNEVALUABLE UNEVALUABLE
659_bXS POU3F2 INTERGENIC chr6 98834887 chr6 102741807 DUP MantaDUP:TANDEM:14994:0:1:0:0:0 TRUTH 0 0 1821 1 6 99282763 6 103189682 0 1 UNEVALUABLE UNEVALUABLE
659_bXS PDSS2 CTGF chr6 107346251 chr6 131950963 DEL MantaDEL:15060:0:1:0:0:0 TRUTH 0 0 0 1241 6 107667455 6 132272103 0 0 UNEVALUABLE UNEVALUABLE
659_bXS ROS1 PTPRK chr6 117325675 chr6 128373835 DUP MantaDUP:TANDEM:15233:0:1:0:0:0 TRUTH 0 0 4429 0 6 117646838 6 128694980 0 0 UNEVALUABLE UNEVALUABLE
659_bXS INTERGENIC AEBP2 chr6 170048210 chr12 19440193 BND MantaBND:9731:1:2:0:0:0:0 TRUTH 0 0 1 3613 6 170363434 12 19593127 0 1 UNEVALUABLE UNEVALUABLE
659_bXS CHD4 INTERGENIC chr12 6583210 chr12 6923925 DEL MantaDEL:6:484:3071:0:1:0 TRUTH 0 0 3104 0 12 6692376 12 7033088 0 0 UNEVALUABLE UNEVALUABLE
659_bXS PTPN6 INTERGENIC chr12 6960855 chr12 17520440 DEL MantaDEL:24233:0:2:0:0:0 TRUTH 0 0 1257 0 12 7070018 12 17673374 0 0 UNEVALUABLE UNEVALUABLE
659_bXS PTPN6 INTERGENIC chr12 6960889 chr12 17522453 DUP MantaDUP:TANDEM:24233:0:1:0:0:0 TRUTH 0 0 1216 0 12 7070052 12 17675387 0 0 UNEVALUABLE UNEVALUABLE
659_btY FRMD4A ETV4 chr10 13777888 chr17 43531224 BND MantaBND:42078:0:1:0:0:0:1 TRUTH 0 0 0 7654 10 13819888 17 41608592 0 0 UNEVALUABLE UNEVALUABLE
659_btY ETV4 EWSR1 chr17 43530985 chr22 29291838 BND MantaBND:9:8096:8119:0:0:0:0 TRUTH 0 0 7681 6615 17 41608353 22 29687827 0 6615 EVALUABLE BAM_REFUTED
659_btY PLAGL2 EWSR1 chr20 32192810 chr22 29291963 BND MantaBND:9:8096:8120:0:1:0:1 TRUTH 0 0 0 6615 20 30780613 22 29687952 0 0 UNEVALUABLE UNEVALUABLE
659_dc8 SND1 BRAF chr7 127909486 chr7 140792524 INV MantaINV:12826:0:1:0:0:0 TRUTH 0 0 1 5506 7 127549539 7 140492324 0 1 UNEVALUABLE UNEVALUABLE
659_dc8 SND1 BRAF chr7 127909486 chr7 140792534 INV MantaINV:12826:0:1:1:0:0 TRUTH 0 0 1 5540 7 127549539 7 140492334 0 1 UNEVALUABLE UNEVALUABLE
659_doL INTERGENIC TMPRSS2 chr11 113787395 chr21 41503557 BND MantaBND:30701:0:1:0:0:0:0 TRUTH 0 0 0 5919 11 113658117 21 42875484 0 0 UNEVALUABLE UNEVALUABLE
659_doL ERG TMPRSS2 chr21 38488157 chr21 41503540 DEL MantaDEL:30701:1:2:0:0:0 TRUTH 0 0 0 5912 21 39860080 21 42875467 0 0 UNEVALUABLE UNEVALUABLE
659_bZH INTERGENIC RNF157 chr1 26582792 chr17 76165517 BND MantaBND:938:0:1:0:0:0:0 TRUTH 0 0 0 358 1 26909283 17 74161598 0 0 UNEVALUABLE UNEVALUABLE
659_bZH NSUN2 ELMO1 chr5 6607332 chr7 36980207 BND MantaBND:17388:0:1:0:0:0:0 TRUTH 0 0 656 2 5 6607445 7 37019812 0 2 UNEVALUABLE UNEVALUABLE
659_bZH DNAH5 TRIO chr5 13839443 chr5 14483822 DUP MantaDUP:TANDEM:17498:0:1:0:0:0 TRUTH 0 0 479 0 5 13839552 5 14483931 0 0 UNEVALUABLE UNEVALUABLE
659_bZH SDK1 ETV1 chr7 3501618 chr7 13951969 DUP MantaDUP:TANDEM:23115:0:1:0:0:0 TRUTH 0 0 0 5847 7 3541250 7 13991594 0 0 UNEVALUABLE UNEVALUABLE
659_bZH C7orf10 KBTBD13 chr7 40623326 chr15 65078078 BND MantaBND:24106:0:1:0:0:0:1 TRUTH 0 0 0 2509 7 40662925 15 65370416 0 0 UNEVALUABLE UNEVALUABLE
659_bZH UNC93B1 INTERGENIC chr11 67995734 chr22 29305407 BND MantaBND:8:2275:4098:0:0:0:0 TRUTH 0 0 1288 16 11 67763205 22 29701397 0 16 UNEVALUABLE UNEVALUABLE
659_bZH INTERGENIC MESDC2 chr15 80259849 chr15 80979275 DEL MantaDEL:18172:1:2:0:0:0 TRUTH 0 0 0 1286 15 80552191 15 81271616 0 0 UNEVALUABLE UNEVALUABLE
659_bZH INTERGENIC EP300 chr15 99518416 chr22 41178435 BND MantaBND:8:4136:4140:0:0:0:1 TRUTH 0 0 6 9279 15 100058621 22 41574439 0 6 UNEVALUABLE UNEVALUABLE
659_bZH RANBP1 INTERGENIC chr22 20118309 chr22 35043892 INV MantaINV:48430:0:1:0:0:0 TRUTH 0 0 1987 1 22 20105832 22 35439884 0 1 UNEVALUABLE UNEVALUABLE
659_bZH SPECC1L-ADORA2A PRR5-ARHGAP8 chr22 24283612 chr22 44730434 DUP MantaDUP:TANDEM:16650:7:12:1:1:0 TRUTH 0 0 7 3905 22 24679580 22 45126314 0 7 UNEVALUABLE UNEVALUABLE
659_bZH SPECC1L-ADORA2A PRR5-ARHGAP8 chr22 24283720 chr22 44730199 DEL MantaDEL:16650:7:12:0:0:0 TRUTH 0 0 6 4919 22 24679688 22 45126079 0 6 UNEVALUABLE UNEVALUABLE
659_bZH SPECC1L-ADORA2A PRR5-ARHGAP8 chr22 24285594 chr22 44730305 DUP MantaDUP:TANDEM:16650:7:10:1:2:0 TRUTH 0 0 4 4438 22 24681562 22 45126185 0 4 UNEVALUABLE UNEVALUABLE
659_bZH INTERGENIC PRR5-ARHGAP8 chr22 31058452 chr22 44730208 DEL MantaDEL:16650:6:7:0:1:0 TRUTH 0 0 0 4876 22 31454438 22 45126088 0 0 UNEVALUABLE UNEVALUABLE
659_bZH LIMK2 PRR5-ARHGAP8 chr22 31255596 chr22 44730208 INV MantaINV:16650:4:7:0:2:0 TRUTH 0 0 2 4876 22 31651582 22 45126088 0 2 UNEVALUABLE UNEVALUABLE
659_bZH INTERGENIC PRR5-ARHGAP8 chr22 34239004 chr22 44730385 DUP MantaDUP:TANDEM:16650:2:7:0:0:0 TRUTH 0 0 0 4161 22 34634993 22 45126265 0 0 UNEVALUABLE UNEVALUABLE
659_bZH INTERGENIC PRR5-ARHGAP8 chr22 34239711 chr22 44729453 DUP MantaDUP:TANDEM:16650:1:3:0:0:0 TRUTH 0 0 0 3446 22 34635700 22 45125333 0 0 UNEVALUABLE UNEVALUABLE
659_bhK INTERGENIC RET chr10 16373927 chr10 43115031 DEL MantaDEL:1:4343:4347:0:1:0 TRUTH 0 0 1 10518 10 16415926 10 43610479 0 1 UNEVALUABLE UNEVALUABLE
659_bhK INTERGENIC RET chr10 16394031 chr10 43102345 DEL MantaDEL:13656:1:2:0:0:0 TRUTH 0 0 0 3746 10 16436030 10 43597793 0 0 UNEVALUABLE UNEVALUABLE
659_bhK RET INTERGENIC chr10 43102363 chr10 107811961 DEL MantaDEL:13656:1:3:0:0:0 TRUTH 0 0 3748 1 10 43597811 10 109571719 0 1 UNEVALUABLE UNEVALUABLE
659_bqk PIK3CD SDK1 chr1 9722249 chr7 4153584 BND MantaBND:271:0:1:0:0:0:1 TRUTH 0 0 1504 8 1 9782307 7 4193216 0 8 UNEVALUABLE UNEVALUABLE
659_bqk SH3BP5 METTL6 chr3 15256103 chr3 15409454 DUP MantaDUP:TANDEM:6610:0:1:0:0:0 TRUTH 0 0 709 0 3 15297610 3 15450961 0 0 UNEVALUABLE UNEVALUABLE
659_bqk GCSAM WDR52 chr3 112133098 chr3 113298967 DUP MantaDUP:TANDEM:7661:0:1:0:1:0 TRUTH 0 0 591 0 3 111851945 3 113017814 0 0 UNEVALUABLE UNEVALUABLE
659_bqk AC021860.1 TLR10 chr4 38631433 chr4 38774652 DUP MantaDUP:TANDEM:9039:0:1:0:0:0 TRUTH 0 0 10 2381 4 38633054 4 38776273 0 10 UNEVALUABLE UNEVALUABLE
659_bqk INTERGENIC DNMT1 chr4 77284089 chr19 10151429 BND MantaBND:9305:2:3:0:0:0:0 TRUTH 0 0 0 1499 4 78205242 19 10262105 0 0 UNEVALUABLE UNEVALUABLE
659_bqk ARL15 FAM169A chr5 54237450 chr5 74782996 DEL MantaDEL:10673:0:1:0:0:0 TRUTH 0 0 0 459 5 53533280 5 74078821 0 0 UNEVALUABLE UNEVALUABLE
659_bqk MAMDC4 INTERGENIC chr9 136856733 chr9 137074785 DUP MantaDUP:TANDEM:18395:0:1:0:0:0 TRUTH 0 0 1863 6 9 139751185 9 139969237 0 6 UNEVALUABLE UNEVALUABLE
659_bqk SIRT3 PHRF1 chr11 216273 chr11 607306 DUP MantaDUP:TANDEM:19923:0:1:0:0:0 TRUTH 0 0 280 3401 11 216273 11 607306 0 280 EVALUABLE BAM_REFUTED
659_bqk SLC22A12 CAPN1 chr11 64601503 chr11 65191631 DUP MantaDUP:TANDEM:20840:0:1:0:0:0 TRUTH 0 0 493 4 11 64368975 11 64959102 0 4 UNEVALUABLE UNEVALUABLE
659_bqk TMEM134 INTERGENIC chr11 67465233 chr19 10297737 BND MantaBND:20889:0:1:0:0:0:0 TRUTH 0 0 1091 12 11 67232704 19 10408413 0 12 UNEVALUABLE UNEVALUABLE
659_bqk ETV6 CLIP1 chr12 11867963 chr12 122362591 DUP MantaDUP:TANDEM:2:6317:6319:0:0:0 TRUTH 0 0 6185 3 12 12020897 12 122847138 0 3 UNEVALUABLE UNEVALUABLE
659_bqk IRX3 INTERGENIC chr16 54285464 chr16 54535478 DUP MantaDUP:TANDEM:27110:0:1:0:0:0 TRUTH 0 0 2753 1 16 54319376 16 54569390 0 1 UNEVALUABLE UNEVALUABLE
659_bqk EML2 AC011530.4 chr19 45614845 chr19 45784640 DUP MantaDUP:TANDEM:31322:0:1:0:0:0 TRUTH 0 0 389 1159 19 46118103 19 46287898 0 389 EVALUABLE BAM_REFUTED
659_bqk KREMEN1 INTERGENIC chr22 29138687 chr22 30037383 DUP MantaDUP:TANDEM:33275:0:1:0:0:0 TRUTH 0 0 687 2 22 29534675 22 30433372 0 2 UNEVALUABLE UNEVALUABLE
659_bR4 ALK EML4 chr2 29224600 chr2 42299250 INV MantaINV:2:506:507:0:0:0 TRUTH 0 0 6615 0 2 29447466 2 42526390 0 0 UNEVALUABLE UNEVALUABLE
659_bR4 MAST4 INTERGENIC chr5 67165039 chr18 1864275 BND MantaBND:9461:0:1:0:0:0:0 TRUTH 0 0 3043 2 5 66460867 18 1864276 0 2 UNEVALUABLE UNEVALUABLE
659_bR4 PRKACG INTERGENIC chr9 69013639 chr9 69098190 DUP MantaDUP:TANDEM:15310:0:1:0:0:0 TRUTH 0 0 2491 6 9 71628555 9 71713106 0 6 UNEVALUABLE UNEVALUABLE
659_bST SMARCAL1 TNS1 chr2 216475182 chr2 217818141 INV MantaINV:8257:0:1:0:0:0 TRUTH 0 0 739 3956 2 217339905 2 218682864 0 739 EVALUABLE BAM_REFUTED
659_bST BRAF CUL1 chr7 140789202 chr7 148761092 INV MantaINV:21173:0:1:1:0:0 TRUTH 0 0 4274 43 7 140489002 7 148458184 0 43 EVALUABLE BAM_REFUTED
659_bV0 INTERGENIC LRRC14 chr5 54555966 chr8 144520601 BND MantaBND:2927:1:2:0:0:0:1 TRUTH 0 0 0 2758 5 53851796 8 145745985 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 XPA INTERGENIC chr9 97687245 chr9 97924718 DEL MantaDEL:32977:0:1:0:0:0 TRUTH 0 0 842 7 9 100449527 9 100687000 0 7 UNEVALUABLE UNEVALUABLE
659_bV0 CCDC77 SLCO1B3 chr12 441888 chr12 20857618 DUP MantaDUP:TANDEM:8077:0:1:0:0:0 TRUTH 0 0 877 0 12 551054 12 21010552 0 0 UNEVALUABLE UNEVALUABLE
659_bV0 ESYT1 MSI2 chr12 56138754 chr17 57596870 BND MantaBND:40372:0:1:0:0:0:0 TRUTH 0 0 1272 743 12 56532538 17 55674231 0 743 EVALUABLE BAM_REFUTED
659_bV0 INTERGENIC PRPF6 chr20 34183087 chr20 63983213 DUP MantaDUP:TANDEM:53659:0:1:0:0:0 TRUTH 0 0 7 945 20 32770893 20 62614566 0 7 UNEVALUABLE UNEVALUABLE
659_bV0 ERG TMPRSS2 chr21 38495363 chr21 41494677 DEL MantaDEL:54609:0:1:0:0:0 TRUTH 0 0 0 7243 21 39867287 21 42866604 0 0 UNEVALUABLE UNEVALUABLE
659_bV5 MACC1 INTERGENIC chr7 20158240 chr7 25253284 INV MantaINV:17778:0:1:0:0:0 TRUTH 0 0 1737 1 7 20197863 7 25292903 0 1 UNEVALUABLE UNEVALUABLE
659_bV5 MACC1 ASZ1 chr7 20159037 chr7 117400084 DUP MantaDUP:TANDEM:17800:0:1:0:0:0 TRUTH 0 0 3056 0 7 20198660 7 117040138 0 0 UNEVALUABLE UNEVALUABLE
659_bV5 FGFR3 JAKMIP1 chr4 1807079 chr4 6096809 INV MantaINV:11255:0:3:0:0:0 TRUTH 0 0 16166 0 4 1808806 4 6098536 0 0 UNEVALUABLE UNEVALUABLE
659_bUW BMS1 BTK chr10 42822164 chrX 101374536 BND MantaBND:21947:1:2:0:0:0:1 TRUTH 0 0 325 909 10 43317612 X 100629524 0 325 EVALUABLE BAM_REFUTED
659_bUW RET ARMCX4 chr10 43106056 chrX 101492226 BND MantaBND:21988:0:1:0:0:0:1 TRUTH 0 0 1796 2789 10 43601504 X 100747213 0 1796 EVALUABLE BAM_REFUTED
659_bUW RET CCDC6 chr10 43114346 chr10 59863812 INV MantaINV:21979:0:1:0:0:0 TRUTH 0 0 10966 1 10 43609794 10 61623570 0 1 UNEVALUABLE UNEVALUABLE
659_bUW RET RASGEF1A chr10 43123314 chr10 43196248 DEL MantaDEL:21943:0:1:0:0:0 TRUTH 0 0 1613 680 10 43618762 10 43691696 0 680 EVALUABLE BAM_REFUTED
659_bUW INTERGENIC ARMCX4 chr10 56785423 chrX 101495249 BND MantaBND:22136:0:1:0:0:0:1 TRUTH 0 0 0 1301 10 58545183 X 100750236 0 0 UNEVALUABLE UNEVALUABLE
659_bUW BTK ARMCX4 chrX 101374957 chrX 101493924 DEL MantaDEL:2:7414:7415:0:0:0 TRUTH 0 0 2406 2310 X 100629945 X 100748911 0 2310 EVALUABLE BAM_REFUTED
659_bjq LMNA NTRK1 chr1 156130761 chr1 156874271 DEL MantaDEL:1:1019:1020:0:0:0 TRUTH 0 0 588 11317 1 156100552 1 156844063 0 588 EVALUABLE BAM_REFUTED
659_bjq CARD16 CARD17 chr11 105044645 chr11 105100797 DUP MantaDUP:TANDEM:41961:0:1:0:0:0 TRUTH 0 0 1529 1278 11 104915372 11 104971524 0 1278 EVALUABLE BAM_REFUTED
659_cd9 FAM19A2 NUP107 chr12 62164205 chr12 68731228 INV MantaINV:49369:0:1:0:0:0 TRUTH 0 0 3 737 12 62557986 12 69125008 0 3 UNEVALUABLE UNEVALUABLE
659_cd9 CYP27B1 HMGA2 chr12 57766015 chr12 65827232 INV MantaINV:40847:1:2:0:0:0 TRUTH 0 0 1290 10 12 58159798 12 66221012 0 10 UNEVALUABLE UNEVALUABLE
659_cd9 TRIO INTERGENIC chr5 14369493 chr5 28407569 INV MantaINV:22626:0:1:0:0:0 TRUTH 0 0 1330 6 5 14369602 5 28407676 0 6 UNEVALUABLE UNEVALUABLE
659_cd9 NIPBL MYRFL chr5 36882028 chr12 69952171 BND MantaBND:10:2909:2910:0:0:0:0 TRUTH 0 0 2 347 5 36882130 12 70345951 0 2 UNEVALUABLE UNEVALUABLE
659_cd9 INTERGENIC B4GALNT1 chr5 40076368 chr12 57627781 BND MantaBND:10:2625:2626:0:0:0:0 TRUTH 0 0 0 2262 5 40076470 12 58021564 0 0 UNEVALUABLE UNEVALUABLE
659_cd9 INTERGENIC PRLR chr5 25438313 chr5 35086242 DUP MantaDUP:TANDEM:23449:0:1:0:0:0 TRUTH 0 0 4 604 5 25438422 5 35086344 0 4 UNEVALUABLE UNEVALUABLE
659_cd9 PLCH2 INTERGENIC chr1 2504604 chr12 69035511 BND MantaBND:183:0:1:0:0:0:0 TRUTH 0 0 2607 7 1 2436043 12 69429291 0 7 UNEVALUABLE UNEVALUABLE
659_ddF INTERGENIC DNAH5 chr5 13548291 chr5 13716560 DEL MantaDEL:11044:0:1:0:0:0 TRUTH 0 0 2 414 5 13548400 5 13716669 0 2 UNEVALUABLE UNEVALUABLE
659_ddF INTERGENIC GTF3C1 chr6 132131809 chr16 27489175 BND MantaBND:14237:0:1:0:0:0:0 TRUTH 0 0 0 569 6 132452949 16 27500496 0 0 UNEVALUABLE UNEVALUABLE
659_ddF MED24 MAGEE1 chr17 40026011 chrX 76428879 BND MantaBND:3:9645:9855:0:0:0:1 TRUTH 0 0 654 4000 17 38182264 X 75649272 0 654 EVALUABLE BAM_REFUTED
659_ddF MED24 MAGEE1 chr17 40026356 chrX 76429065 BND MantaBND:3:9645:9855:1:0:0:0 TRUTH 0 0 1196 3925 17 38182609 X 75649458 0 1196 EVALUABLE BAM_REFUTED
659_ddF RARA RAB12 chr17 40338664 chr18 8615300 BND MantaBND:3:9897:9898:0:0:0:0 TRUTH 0 0 4421 10 17 38494916 18 8615298 0 10 UNEVALUABLE UNEVALUABLE
659_ddF INTERGENIC SSTR2 chr17 73135304 chr17 73169623 INV MantaINV:26950:0:1:0:0:0 TRUTH 0 0 8 2362 17 71131443 17 71165762 0 8 UNEVALUABLE UNEVALUABLE
659_ddF HGS GPS1 chr17 81695097 chr17 82056699 INV MantaINV:30832:0:1:0:0:0 TRUTH 0 0 1165 2317 17 79662127 17 80014575 0 1165 EVALUABLE BAM_REFUTED
659_ddF INTERGENIC LAMA5 chr20 60400532 chr20 62337914 DUP MantaDUP:TANDEM:33757:0:1:0:0:0 TRUTH 0 0 0 2488 20 58975590 20 60912970 0 0 UNEVALUABLE UNEVALUABLE
659_drH FAM71C ANKS1B chr12 99648351 chr12 99661662 INV MantaINV:28605:0:1:0:0:0 TRUTH 0 0 1780 0 12 100042129 12 100055440 0 0 UNEVALUABLE UNEVALUABLE
659_drH MED20 DST chr6 41909424 chr6 56525605 INV MantaINV:15987:0:1:0:0:0 TRUTH 0 0 780 4 6 41877162 6 56390403 0 4 UNEVALUABLE UNEVALUABLE
659_drH INTERGENIC SLCO2B1 chr11 41064018 chr11 75200288 DEL MantaDEL:11486:0:1:0:0:0 TRUTH 0 0 0 597 11 41085568 11 74911333 0 0 UNEVALUABLE UNEVALUABLE
659_drH FAM71C OAS2 chr12 99648970 chr12 112987978 DUP MantaDUP:TANDEM:28615:0:1:0:0:0 TRUTH 0 0 1331 1309 12 100042748 12 113425783 0 1309 EVALUABLE BAM_REFUTED
659_drH INTERGENIC GPR137 chr11 62056544 chr11 64287282 INV MantaINV:25873:0:1:0:0:0 TRUTH 0 0 0 1233 11 61824016 11 64054754 0 0 UNEVALUABLE UNEVALUABLE
659_drH INTERGENIC POLR3A chr10 70933363 chr10 78022255 DEL MantaDEL:24194:0:1:0:0:0 TRUTH 0 0 0 896 10 72693120 10 79782013 0 0 UNEVALUABLE UNEVALUABLE
659_drH RUNX2 DST chr6 45432555 chr6 56515554 INV MantaINV:16102:0:1:0:0:0 TRUTH 0 0 154 629 6 45400292 6 56380352 0 154 EVALUABLE BAM_REFUTED
659_drH CEP72 INTERGENIC chr5 640781 chr11 60343083 BND MantaBND:13017:0:1:0:0:0:1 TRUTH 0 0 2302 0 5 640896 11 60110556 0 0 UNEVALUABLE UNEVALUABLE
659_drH SNX32 NUMA1 chr11 65853298 chr11 72023575 DEL MantaDEL:26316:0:1:0:0:0 TRUTH 0 0 750 125 11 65620769 11 71734621 0 125 EVALUABLE BAM_REFUTED
659_drH INTERGENIC NEMF chr14 42255183 chr14 49832059 INV MantaINV:29961:0:1:0:0:0 TRUTH 0 0 0 349 14 42724386 14 50298777 0 0 UNEVALUABLE UNEVALUABLE
659_drH PCNXL3 INTERGENIC chr11 65630528 chr11 69343093 INV MantaINV:26088:0:1:0:0:0 TRUTH 0 0 1053 0 11 65397999 11 69157861 0 0 UNEVALUABLE UNEVALUABLE
659_drH NDUFV1 MTL5 chr11 67608464 chr11 68715423 DEL MantaDEL:5:115:4355:0:0:0 TRUTH 0 0 1165 194 11 67375935 11 68482891 0 194 EVALUABLE BAM_REFUTED
659_drH AP5B1 INTERGENIC chr11 65779951 chr11 79673017 DUP MantaDUP:TANDEM:5:4366:4459:0:0:0 TRUTH 0 0 3217 0 11 65547422 11 79384061 0 0 UNEVALUABLE UNEVALUABLE
659_drH RFX4 OAS2 chr12 106613997 chr12 113009409 INV MantaINV:28709:0:1:0:0:0 TRUTH 0 0 4 1683 12 107007775 12 113447214 0 4 UNEVALUABLE UNEVALUABLE
659_drH CEP72 PACS1 chr5 640986 chr11 66240994 BND MantaBND:13017:0:2:0:0:0:1 TRUTH 0 0 2606 203 5 641101 11 66008465 0 203 EVALUABLE BAM_REFUTED
659_drH MRPL21 NUMA1 chr11 68900298 chr11 72009107 DUP MantaDUP:TANDEM:5:4504:4518:0:0:0 TRUTH 0 0 233 1451 11 68667766 11 71720153 0 233 EVALUABLE BAM_REFUTED
659_drH KEAP1 INTERGENIC chr19 10491629 chr19 10597413 DEL MantaDEL:36098:0:1:0:0:0 TRUTH 0 0 3789 6 19 10602305 19 10708089 0 6 UNEVALUABLE UNEVALUABLE
659_drH SLC22A24 NUMA1 chr11 63136010 chr11 72009300 DEL MantaDEL:5:4504:4519:0:0:0 TRUTH 0 0 0 1256 11 62903482 11 71720346 0 0 UNEVALUABLE UNEVALUABLE
659_drH PACS1 CARNS1 chr11 66220279 chr11 67416490 DUP MantaDUP:TANDEM:5:4398:4402:0:0:0 TRUTH 0 0 535 1640 11 65987750 11 67183961 0 535 EVALUABLE BAM_REFUTED
659_ehU MSH2 CACNA1A chr2 47415381 chr19 13224524 BND MantaBND:16170:0:8:0:0:0:1 TRUTH 0 0 4698 283 2 47642520 19 13335338 0 283 EVALUABLE BAM_REFUTED
659_ehU INTERGENIC SLC22A25 chr2 153443424 chr11 63164572 BND MantaBND:20519:0:1:0:0:0:1 TRUTH 0 0 25 594 2 154299938 11 62932044 0 25 EVALUABLE BAM_REFUTED
659_ehU HRH1 INTERGENIC chr3 11259246 chr7 101805923 BND MantaBND:25471:0:1:0:0:0:1 TRUTH 0 0 1510 6 3 11300932 7 101449203 0 6 UNEVALUABLE UNEVALUABLE
659_ehU INTERGENIC FAT1 chr4 186326573 chr4 186663307 INV MantaINV:38868:0:1:0:0:0 TRUTH 0 0 0 2220 4 187247727 4 187584461 0 0 UNEVALUABLE UNEVALUABLE
659_ehU SEMA5A ARID1B chr5 9190425 chr6 156993106 BND MantaBND:39402:0:1:0:0:0:0 TRUTH 0 0 646 13 5 9190537 6 157314240 0 13 UNEVALUABLE UNEVALUABLE
659_ehU EMB INTERGENIC chr5 50441075 chr14 100656638 BND MantaBND:40786:0:1:0:0:0:0 TRUTH 0 0 375 0 5 49736909 14 101122975 0 0 UNEVALUABLE UNEVALUABLE
659_ehU INTERGENIC LRRC25 chr6 40247280 chr19 18396495 BND MantaBND:48681:0:1:0:0:0:1 TRUTH 0 0 6 2681 6 40215019 19 18507305 0 6 UNEVALUABLE UNEVALUABLE
659_ehU INTERGENIC BRCA1 chr6 76202253 chr17 43059435 BND MantaBND:9:4375:4474:0:3:0:0 TRUTH 0 0 0 5457 6 76911970 17 41211452 0 0 UNEVALUABLE UNEVALUABLE
659_ehU CEP85L MORC2 chr6 118616708 chr22 30935029 BND MantaBND:51219:0:1:0:1:0:0 TRUTH 0 0 5 1674 6 118937871 22 31331016 0 5 UNEVALUABLE UNEVALUABLE
659_ehU INTERGENIC NOTCH1 chr6 120258569 chr9 136502804 BND MantaBND:49824:1:2:0:0:0:0 TRUTH 0 0 6 6999 6 120579715 9 139397256 0 6 UNEVALUABLE UNEVALUABLE
659_ehU SLC13A1 INTERGENIC chr7 123119098 chr8 128781177 BND MantaBND:57047:0:1:0:0:0:1 TRUTH 0 0 412 0 7 122759152 8 129793423 0 0 UNEVALUABLE UNEVALUABLE
1173_KQG INTERGENIC FBXO10 chr3 47206358 chr9 37512688 BND MantaBND:8118:0:1:0:0:0:1 TRUTH 0 0 1 572 3 47247848 9 37512685 0 1 UNEVALUABLE UNEVALUABLE
1173_PCB SFXN5 RAB11FIP5 chr2 73070751 chr2 73079886 DUP MantaDUP:TANDEM:7807:0:1:0:0:0 TRUTH 0 0 2 2145 2 73297880 2 73307014 0 2 UNEVALUABLE UNEVALUABLE
1173_PCB SATB2 ARGFX chr2 199308808 chr3 121581805 BND MantaBND:10276:0:1:0:1:0:0 TRUTH 0 0 717 3 2 200173531 3 121300652 0 3 UNEVALUABLE UNEVALUABLE
1173_PCB FKBP5 ARMC12 chr6 35718544 chr6 35748741 DUP MantaDUP:TANDEM:21733:0:1:0:0:0 TRUTH 0 0 0 945 6 35686321 6 35716518 0 0 UNEVALUABLE UNEVALUABLE
1173_PCB CUBN TRDMT1 chr10 17045180 chr10 17171475 DEL MantaDEL:30659:0:1:0:0:0 TRUTH 0 0 614 7 10 17087179 10 17213474 0 7 UNEVALUABLE UNEVALUABLE
1173_PCB NUP160 INTERGENIC chr11 47788570 chr11 47852371 DEL MantaDEL:33118:0:1:0:0:0 TRUTH 0 0 804 0 11 47810122 11 47873923 0 0 UNEVALUABLE UNEVALUABLE
659_8w KLF5 INTERGENIC chr13 73059427 chr16 73896060 BND MantaBND:4:4389:4390:0:0:0:1 TRUTH 0 0 1321 8 13 73633565 16 73929959 0 8 UNEVALUABLE UNEVALUABLE
659_8w CH25H INTERGENIC chr10 89206688 chr15 97659672 BND MantaBND:27331:0:1:0:0:0:1 TRUTH 0 0 2115 0 10 90966445 15 98202902 0 0 UNEVALUABLE UNEVALUABLE
659_8w MX1 TMPRSS2 chr21 41458179 chr21 41499052 DUP MantaDUP:TANDEM:43499:0:1:0:0:0 TRUTH 0 0 902 8900 21 42830106 21 42870979 0 902 EVALUABLE BAM_REFUTED
659_8w ERG TMPRSS2 chr21 38461141 chr21 41498551 DEL MantaDEL:43465:0:1:0:0:0 TRUTH 0 0 0 9492 21 39833064 21 42870478 0 0 UNEVALUABLE UNEVALUABLE
659_bGd ZNF703 INTERGENIC chr8 37698138 chr8 105054495 DUP MantaDUP:TANDEM:5:3003:3004:0:0:0 TRUTH 0 0 8363 0 8 37555656 8 106066723 0 0 UNEVALUABLE UNEVALUABLE
659_bGd ZMYND11 INTERGENIC chr10 221308 chr15 95640778 BND MantaBND:34706:0:1:0:0:0:1 TRUTH 0 0 511 0 10 267248 15 96184007 0 0 UNEVALUABLE UNEVALUABLE
659_bGd CUBN INTERGENIC chr10 16851293 chr15 96878508 BND MantaBND:35149:0:1:0:0:0:1 TRUTH 0 0 375 0 10 16893292 15 97421738 0 0 UNEVALUABLE UNEVALUABLE
659_bGd SLCO3A1 INTERGENIC chr15 92163793 chr15 92722562 DEL MantaDEL:47305:0:1:0:0:0 TRUTH 0 0 2304 6 15 92707023 15 93265792 0 6 UNEVALUABLE UNEVALUABLE
659_bGd WIPF2 RARA chr17 40229579 chr17 40337365 INV MantaINV:5:5968:5987:0:0:0 TRUTH 0 0 59 6712 17 38385831 17 38493617 0 59 EVALUABLE BAM_REFUTED
659_bGc INTERGENIC RET chr6 58381388 chr10 43115774 BND MantaBND:25772:0:1:0:0:0:1 TRUTH 0 0 0 8533 6 58707666 10 43611222 0 0 UNEVALUABLE UNEVALUABLE
659_bGc KIF5B RET chr10 32027076 chr10 43115774 INV MantaINV:25772:1:2:0:0:0 TRUTH 0 0 1 8533 10 32316004 10 43611222 0 1 UNEVALUABLE UNEVALUABLE
659_bMa INTERGENIC PPME1 chr8 50903497 chr11 74230335 BND MantaBND:27682:0:1:0:0:0:0 TRUTH 0 0 10 558 8 51816057 11 73941380 0 10 UNEVALUABLE UNEVALUABLE
659_bMa KLHL35 INTERGENIC chr11 75429992 chr11 83335123 DEL MantaDEL:34699:0:1:0:0:0 TRUTH 0 0 1285 1 11 75141037 11 83046166 0 1 UNEVALUABLE UNEVALUABLE
659_cit INTERGENIC UBC chr12 72861292 chr12 124911739 INV MantaINV:34670:0:1:0:3:0 TRUTH 0 0 0 2012 12 73255072 12 125396285 0 0 UNEVALUABLE UNEVALUABLE
659_cit PBXIP1 DCST2 chr1 154955107 chr1 155033462 DUP MantaDUP:TANDEM:3068:0:1:0:0:0 TRUTH 0 0 207 1800 1 154927583 1 155005938 0 207 EVALUABLE BAM_REFUTED
659_cit RBM48 IMMP2L chr7 92535085 chr7 110814662 INV MantaINV:23590:0:1:0:0:0 TRUTH 0 0 1549 0 7 92164399 7 110454718 0 0 UNEVALUABLE UNEVALUABLE
659_cit ABCA10 SEC14L1 chr17 69183673 chr17 77214802 DEL MantaDEL:42971:0:1:0:1:0 TRUTH 0 0 0 2355 17 67179814 17 75210884 0 0 UNEVALUABLE UNEVALUABLE
659_cit INTERGENIC RPGRIP1L chr16 53545373 chr16 53657468 DEL MantaDEL:40293:0:1:0:0:0 TRUTH 0 0 0 280 16 53579285 16 53691380 0 0 UNEVALUABLE UNEVALUABLE
659_cit AGAP2 INTERGENIC chr12 57729644 chr12 61251651 DUP MantaDUP:TANDEM:17937:1:4:0:0:0 TRUTH 0 0 771 2 12 58123427 12 61645432 0 2 UNEVALUABLE UNEVALUABLE
659_cit KCND3 CAPZA1 chr1 111982632 chr1 112659077 INV MantaINV:2406:0:1:0:0:0 TRUTH 0 0 1874 189 1 112525254 1 113201699 0 189 EVALUABLE BAM_REFUTED
659_cit LIPN LIPA chr10 88764498 chr10 89213705 INV MantaINV:30192:0:1:0:0:0 TRUTH 0 0 461 0 10 90524255 10 90973462 0 0 UNEVALUABLE UNEVALUABLE
659_cit OSBPL7 INTERGENIC chr17 47808338 chr17 54548240 INV MantaINV:41746:0:1:0:0:0 TRUTH 0 0 1140 0 17 45885704 17 52625601 0 0 UNEVALUABLE UNEVALUABLE
659_cit INTERGENIC TMEM132D chr7 131079229 chr12 129699980 BND MantaBND:24293:0:1:0:0:0:1 TRUTH 0 0 2 2251 7 130763988 12 130184525 0 2 UNEVALUABLE UNEVALUABLE
659_cit NAALADL1 INTERGENIC chr11 65057368 chr18 61155752 BND MantaBND:31857:0:1:0:0:0:1 TRUTH 0 0 979 0 11 64824840 18 58822985 0 0 UNEVALUABLE UNEVALUABLE
659_cit MYB INTERGENIC chr6 135190198 chr6 135277251 DUP MantaDUP:TANDEM:21468:0:1:0:0:0 TRUTH 0 0 1861 9 6 135511336 6 135598389 0 9 UNEVALUABLE UNEVALUABLE
659_cit CDC14A AMPD2 chr1 100412320 chr1 109625634 INV MantaINV:2176:0:1:0:0:0 TRUTH 0 0 1 1871 1 100877876 1 110168256 0 1 UNEVALUABLE UNEVALUABLE
659_cit PHKB LONP2 chr16 47546499 chr16 48252171 DEL MantaDEL:40250:0:1:0:0:0 TRUTH 0 0 2 412 16 47580410 16 48286082 0 2 UNEVALUABLE UNEVALUABLE
659_cit MKS1 INTERGENIC chr17 58207171 chr17 58235047 INV MantaINV:42228:0:1:0:0:0 TRUTH 0 0 717 1 17 56284532 17 56312408 0 1 UNEVALUABLE UNEVALUABLE
659_dES SH3BGRL3 UBXN11 chr1 26280726 chr1 26282336 DEL MantaDEL:916:0:1:0:1:0 TRUTH 0 0 1224 2514 1 26607217 1 26608827 0 1224 EVALUABLE BAM_REFUTED
659_dES TACC3 FGFR3 chr4 1735857 chr4 1806929 DUP MantaDUP:TANDEM:12:2383:2384:0:0:0 TRUTH 0 0 451 10933 4 1737584 4 1808656 0 451 EVALUABLE BAM_REFUTED
659_dES FOXC1 GMDS chr6 1610562 chr6 1710330 DUP MantaDUP:TANDEM:18729:0:1:0:0:0 TRUTH 0 0 1771 2 6 1610797 6 1710564 0 2 UNEVALUABLE UNEVALUABLE
659_dES OFCC1 MAK chr6 9700296 chr6 10770168 DUP MantaDUP:TANDEM:18873:0:1:0:0:0 TRUTH 1 1 2 515 6 9700529 6 10770401 2 2 UNEVALUABLE UNEVALUABLE
659_dES INTERGENIC LRRC14 chr8 144485765 chr8 144523183 DUP MantaDUP:TANDEM:27389:0:1:0:0:0 TRUTH 0 0 10 1718 8 145711148 8 145748567 0 10 UNEVALUABLE UNEVALUABLE
659_dES NMT2 FAM171A1 chr10 15130215 chr10 15279203 DUP MantaDUP:TANDEM:29769:0:1:0:0:0 TRUTH 0 0 406 0 10 15172214 10 15321202 0 0 UNEVALUABLE UNEVALUABLE
659_dES IFIT1 INTERGENIC chr10 89402777 chr11 91871694 BND MantaBND:30819:0:1:0:0:0:0 TRUTH 0 0 2251 0 10 91162534 11 91604860 0 0 UNEVALUABLE UNEVALUABLE
659_dES ETV6 INTERGENIC chr12 11877443 chr12 12039832 DUP MantaDUP:TANDEM:12:6758:6769:0:1:0 TRUTH 0 0 5644 0 12 12030377 12 12192766 0 0 UNEVALUABLE UNEVALUABLE
659_dES DNAJB7 XPNPEP3 chr22 40861770 chr22 40863358 DEL MantaDEL:12:10914:10915:0:0:0 TRUTH 0 0 3174 37 22 41257774 22 41259362 0 37 EVALUABLE BAM_REFUTED
659_dKM PDIA6 PPM1L chr2 10812746 chr3 160852570 BND MantaBND:4710:0:1:0:0:0:0 TRUTH 0 0 220 0 2 10952872 3 160570358 0 0 UNEVALUABLE UNEVALUABLE
659_dKM DNAH6 DLG1 chr2 84577914 chr3 197184088 BND MantaBND:5758:0:1:0:0:0:1 TRUTH 0 0 147 1290 2 84805038 3 196910959 0 147 EVALUABLE BAM_REFUTED
659_dKM INTERGENIC ZNF311 chr5 103564394 chr6 28996190 BND MantaBND:13677:0:1:0:0:0:1 TRUTH 0 0 7 2832 5 102900095 6 28963967 0 7 UNEVALUABLE UNEVALUABLE
659_dKM SKIDA1 MLLT10 chr10 21516377 chr10 21639405 DEL MantaDEL:23252:0:1:0:1:0 TRUTH 0 0 3390 2 10 21805306 10 21928334 0 2 UNEVALUABLE UNEVALUABLE
659_dKM RET NCOA4 chr10 43115591 chr10 46007138 DUP MantaDUP:TANDEM:23553:0:1:1:0:0 TRUTH 0 0 8642 99 10 43611039 10 51588682 0 99 EVALUABLE BAM_REFUTED
659_dKM RET NCOA4 chr10 43115595 chr10 46007133 DEL MantaDEL:23553:0:1:0:0:0 TRUTH 0 0 8648 111 10 43611043 10 51588687 0 111 EVALUABLE BAM_REFUTED
659_dKM NFAT5 DBF4B chr16 69691785 chr17 44750541 BND MantaBND:33012:0:3:0:0:0:1 TRUTH 0 0 1242 3409 16 69725688 17 42827909 0 1242 EVALUABLE BAM_REFUTED
659_dKM NFAT5 DBF4B chr16 69691786 chr17 44749885 BND MantaBND:33012:0:2:0:0:0:0 TRUTH 0 0 1243 3779 16 69725689 17 42827253 0 1243 EVALUABLE BAM_REFUTED
659_dKM MYO1D EVPL chr17 32666417 chr17 76008903 DUP MantaDUP:TANDEM:33807:0:1:0:0:0 TRUTH 0 0 2 3273 17 30993435 17 74004984 0 2 UNEVALUABLE UNEVALUABLE
659_dKM AATF SOCS7 chr17 37035289 chr17 38352677 DUP MantaDUP:TANDEM:33864:0:1:0:0:0 TRUTH 0 0 7 2289 17 35392586 17 36508560 0 7 UNEVALUABLE UNEVALUABLE
659_dKM RAMP2 INTERGENIC chr17 42762431 chr17 45285437 DUP MantaDUP:TANDEM:34038:0:1:0:0:0 TRUTH 0 0 2074 696 17 40914449 17 43362804 0 696 EVALUABLE BAM_REFUTED
659_dKM MPP3 SDK2 chr17 43830087 chr17 73641272 DEL MantaDEL:34100:0:1:0:0:0 TRUTH 0 0 919 0 17 41907455 17 71637411 0 0 UNEVALUABLE UNEVALUABLE
659_dKM DBF4B ZHX3 chr17 44749923 chr20 41196810 BND MantaBND:33012:2:4:0:0:0:1 TRUTH 0 0 3723 0 17 42827291 20 39825450 0 0 UNEVALUABLE UNEVALUABLE
659_dKM ITGA3 INTERGENIC chr17 50088347 chr17 51528846 DEL MantaDEL:34327:0:1:0:0:0 TRUTH 0 0 970 1 17 48165711 17 49606207 0 1 UNEVALUABLE UNEVALUABLE
659_dKM ZNF440 ZNF439 chr19 11832108 chr19 11868043 DEL MantaDEL:35837:0:1:1:0:0 TRUTH 0 0 4369 3599 19 11942923 19 11978858 0 3599 EVALUABLE BAM_REFUTED
659_dNu RET CCDC6 chr10 43115188 chr10 59871286 INV MantaINV:18817:1:2:0:0:0 TRUTH 0 0 9931 2 10 43610636 10 61631044 0 2 UNEVALUABLE UNEVALUABLE
659_dhS KDR INTERGENIC chr4 55079979 chr17 38618592 BND MantaBND:11201:0:1:0:0:0:0 TRUTH 0 0 1583 11 4 55946146 17 36774845 0 11 UNEVALUABLE UNEVALUABLE
659_dhS RUFY3 SLC4A4 chr4 70764530 chr4 71287116 INV MantaINV:11396:0:1:0:0:0 TRUTH 0 0 167 0 4 71630247 4 72152833 0 0 UNEVALUABLE UNEVALUABLE
659_dhS DCLK2 TMA16 chr4 150079343 chr4 163514285 INV MantaINV:6:1497:1498:0:0:0 TRUTH 0 0 1310 184 4 151000495 4 164435437 0 184 EVALUABLE BAM_REFUTED
659_dhS PPP2R1A ZNF321P chr19 52211339 chr19 52948307 INV MantaINV:20944:1:2:0:0:0 TRUTH 0 0 1596 5 19 52714592 19 53451560 0 5 UNEVALUABLE UNEVALUABLE
1173_CH0 BAI3 MYB chr6 69343787 chr6 135216012 DUP MantaDUP:TANDEM:2:4985:4987:0:0:0 TRUTH 0 0 0 6839 6 70053679 6 135537150 0 0 UNEVALUABLE UNEVALUABLE
1173_CH0 SMAP1 MYB chr6 70690082 chr6 135216241 INV MantaINV:2:4985:4988:0:0:0 TRUTH 0 0 11 6307 6 71399785 6 135537379 0 11 UNEVALUABLE UNEVALUABLE
1173_CH0 GTF2F1 SCUBE1 chr19 6383313 chr22 43203986 BND MantaBND:34007:0:1:0:0:0:1 TRUTH 0 0 548 573 19 6383324 22 43599992 0 548 EVALUABLE BAM_REFUTED
1173_CH0 DHPS INTERGENIC chr19 12679542 chr22 22383646 BND MantaBND:34625:0:1:0:0:0:1 TRUTH 0 0 1201 0 19 12790356 22 22738015 0 0 UNEVALUABLE UNEVALUABLE
1173_CH0 VPREB1 MYO18B chr22 22245257 chr22 25761590 INV MantaINV:2:14225:14226:0:0:0 TRUTH 0 0 1965 322 22 22599669 22 26157557 0 322 EVALUABLE BAM_REFUTED
1173_HOB INTERGENIC NTRK1 chr1 154165372 chr1 156874078 INV MantaINV:2918:0:1:0:0:0 TRUTH 0 0 5 9534 1 154137848 1 156843870 0 5 UNEVALUABLE UNEVALUABLE
1173_HOB INTERGENIC NTRK1 chr1 154165372 chr1 156874078 INV MantaINV:2918:0:1:1:0:0 TRUTH 0 0 5 9534 1 154137848 1 156843870 0 5 UNEVALUABLE UNEVALUABLE
1173_J3R INTERGENIC EPO chr7 100662826 chr7 100722764 DUP MantaDUP:TANDEM:811:1:2:0:0:0 TRUTH 0 0 7 954 7 100260449 7 100320387 0 7 UNEVALUABLE UNEVALUABLE
1173_J3R INTERGENIC SETD1B chr12 121425720 chr12 121827523 DUP MantaDUP:TANDEM:33275:0:1:0:0:0 TRUTH 0 0 12 1173 12 121863523 12 122265429 0 12 UNEVALUABLE UNEVALUABLE
1173_J3R PTPRT PCNT chr20 42692122 chr21 46416319 BND MantaBND:44654:0:1:0:0:0:0 TRUTH 0 0 3 1366 20 41320762 21 47836233 0 3 UNEVALUABLE UNEVALUABLE
1173_NFO INTERGENIC SMARCA4 chr8 143639022 chr19 11003106 BND MantaBND:8:12194:12314:0:0:0:0 TRUTH 0 0 25 2979 8 144721192 19 11113782 0 25 EVALUABLE BAM_REFUTED
1173_NFO RSRC2 INTERGENIC chr12 122511107 chr19 4810012 BND MantaBND:26999:0:1:0:0:0:0 TRUTH 0 0 281 20 12 122995654 19 4810024 0 20 EVALUABLE BAM_REFUTED
1173_NWE INTERGENIC DCXR chr4 114496248 chr17 82037534 BND MantaBND:14331:0:1:0:0:0:0 TRUTH 0 0 0 954 4 115417404 17 79995410 0 0 UNEVALUABLE UNEVALUABLE
1173_NWE ASIC3 POU2F2 chr7 151050544 chr19 42114506 BND MantaBND:22563:0:1:0:0:0:1 TRUTH 0 0 2415 5 7 150747631 19 42618658 0 5 UNEVALUABLE UNEVALUABLE
1173_NWE SCAI HMHA1 chr9 124995669 chr19 1077223 BND MantaBND:25923:0:1:0:0:0:0 TRUTH 0 0 24 1776 9 127757948 19 1077222 0 24 EVALUABLE BAM_REFUTED
1173_NWE INTERGENIC BIRC3 chr11 102260996 chr11 102324494 DUP MantaDUP:TANDEM:29647:0:1:0:0:0 TRUTH 0 0 2 7604 11 102131727 11 102195225 0 2 UNEVALUABLE UNEVALUABLE
1173_NWE INTERGENIC NYNRIN chr14 24379964 chr14 24408212 DUP MantaDUP:TANDEM:33465:0:1:0:0:0 TRUTH 0 0 1 2734 14 24849170 14 24877418 0 1 UNEVALUABLE UNEVALUABLE
1173_NWE INTERGENIC SDHAF1 chr17 45270555 chr19 35996205 BND MantaBND:7:2133:2174:0:0:0:0 TRUTH 0 0 3555 82 17 43347922 19 36487107 0 82 EVALUABLE BAM_REFUTED
659_Mt INTERGENIC EWSR1 chr12 49261251 chr22 29293532 BND MantaBND:46668:0:1:0:0:0:0 TRUTH 0 0 2 4790 12 49655034 22 29689521 0 2 UNEVALUABLE UNEVALUABLE
659_Mt ATF1 EWSR1 chr12 50791937 chr22 29293484 BND MantaBND:46668:1:2:0:0:0:1 TRUTH 0 0 2 4696 12 51185720 22 29689473 0 2 UNEVALUABLE UNEVALUABLE
659_bPW LPGAT1 LEFTY2 chr1 211811208 chr1 225937531 INV MantaINV:4497:2:3:0:0:0 TRUTH 0 0 0 2507 1 211984550 1 226125231 0 0 UNEVALUABLE UNEVALUABLE
659_bPW LEFTY2 INTERGENIC chr1 225937563 chr1 246811216 DEL MantaDEL:4497:2:7:0:0:0 TRUTH 0 0 2507 14 1 226125263 1 246974518 0 14 UNEVALUABLE UNEVALUABLE
659_bPW PGC PRDM4 chr6 41736970 chr12 107750886 BND MantaBND:16312:1:3:0:0:0:1 TRUTH 0 0 677 188 6 41704708 12 108144663 0 188 EVALUABLE BAM_REFUTED
659_bPW INTERGENIC NOS1 chr6 58450697 chr12 117222846 BND MantaBND:18459:0:1:0:0:0:1 TRUTH 0 0 321 695 6 58776975 12 117660651 0 321 EVALUABLE BAM_REFUTED
659_bPW HDAC7 INTERGENIC chr12 47798888 chr12 116529973 DEL MantaDEL:29928:0:1:0:0:0 TRUTH 0 0 977 13 12 48192671 12 116967778 0 13 UNEVALUABLE UNEVALUABLE
659_bPW INTERGENIC SETD1B chr12 48623296 chr12 121804737 DEL MantaDEL:0:3716:3804:0:0:0 TRUTH 0 0 6 1565 12 49017079 12 122242643 0 6 UNEVALUABLE UNEVALUABLE
659_bPW ATF1 DNAJC14 chr12 50781177 chr12 55828006 INV MantaINV:29988:0:1:0:0:0 TRUTH 0 0 7 4058 12 51174960 12 56221790 0 7 UNEVALUABLE UNEVALUABLE
659_bPW FAM109A NAA25 chr12 111362718 chr12 112089855 DUP MantaDUP:TANDEM:7746:0:1:0:0:0 TRUTH 0 0 2811 6 12 111800522 12 112527659 0 6 UNEVALUABLE UNEVALUABLE
659_bPW LHX5 RILPL2 chr12 113470709 chr12 123436334 INV MantaINV:31404:0:1:0:0:0 TRUTH 0 0 45 1818 12 113908514 12 123920881 0 45 EVALUABLE BAM_REFUTED
659_bPW RNFT2 RNF34 chr12 116787881 chr12 121423432 DEL MantaDEL:0:3793:3794:0:0:0 TRUTH 0 0 8 1643 12 117225686 12 121861235 0 8 UNEVALUABLE UNEVALUABLE
659_bPW EFTUD2 SPAG9 chr17 44863701 chr17 51048082 DEL MantaDEL:36977:0:1:0:0:0 TRUTH 0 0 873 9 17 42941069 17 49125443 0 9 UNEVALUABLE UNEVALUABLE
659_bT3 ROBO3 PKNOX2 chr11 124868964 chr11 125234535 INV MantaINV:39380:0:1:0:0:0 TRUTH 0 0 1640 3 11 124738860 11 125104431 0 3 UNEVALUABLE UNEVALUABLE
659_bT3 CRNN INTERGENIC chr1 152410809 chr19 35911349 BND MantaBND:4445:1:3:0:0:0:0 TRUTH 0 0 2540 43 1 152383285 19 36402251 0 43 EVALUABLE BAM_REFUTED
659_bT3 NMNAT2 FGFR1 chr1 183342416 chr8 38465051 BND MantaBND:9:3181:3182:0:0:0:1 TRUTH 0 0 1 9642 1 183311551 8 38322569 0 1 UNEVALUABLE UNEVALUABLE
659_bT3 LDHD ACTN4 chr16 75112706 chr19 38685128 BND MantaBND:48572:0:1:1:0:0:1 TRUTH 0 0 1283 19 16 75146604 19 39175768 0 19 UNEVALUABLE UNEVALUABLE
659_bT3 INTERGENIC CRNN chr1 152408601 chr1 152410808 INV MantaINV:4445:0:1:0:0:0 TRUTH 0 0 4 2550 1 152381077 1 152383284 0 4 UNEVALUABLE UNEVALUABLE
659_bT3 FGFR1 TACC1 chr8 38464584 chr8 38806841 DUP MantaDUP:TANDEM:9:3182:3226:0:1:0 TRUTH 0 0 7685 0 8 38322102 8 38664359 0 0 UNEVALUABLE UNEVALUABLE
659_bT3 INTERGENIC ARHGEF19 chr1 16163616 chr1 16202493 DUP MantaDUP:TANDEM:714:0:1:0:0:0 TRUTH 0 0 14 1079 1 16490111 1 16528988 0 14 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D CCR7 chr17 32531165 chr17 40555026 DUP MantaDUP:TANDEM:45952:0:1:0:0:0 TRUTH 0 0 1 2097 17 30858183 17 38711278 0 1 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D RARA chr17 32493864 chr17 40342659 INV MantaINV:4:705:5636:0:0:0 TRUTH 0 0 0 9571 17 30820882 17 38498911 0 0 UNEVALUABLE UNEVALUABLE
659_cAr INTERGENIC FKBP10 chr17 32413989 chr17 41820439 DUP MantaDUP:TANDEM:4:5634:5809:0:0:0 TRUTH 0 0 3 1334 17 30741008 17 39976691 0 3 UNEVALUABLE UNEVALUABLE
659_cAr INTERGENIC KRT15 chr17 41077174 chr17 41516131 DEL MantaDEL:33893:0:1:0:0:0 TRUTH 0 0 0 1606 17 39233426 17 39672383 0 0 UNEVALUABLE UNEVALUABLE
659_cAr INTERGENIC NXPH3 chr17 39697458 chr17 49579204 INV MantaINV:4:7159:7160:0:0:0 TRUTH 0 0 10 1967 17 37853711 17 47656566 0 10 UNEVALUABLE UNEVALUABLE
659_cAr ABI3 INTERGENIC chr17 49222126 chr17 50205192 DUP MantaDUP:TANDEM:21220:1:3:0:0:0 TRUTH 0 0 1394 0 17 47299488 17 48282553 0 0 UNEVALUABLE UNEVALUABLE
659_cAr FKBP10 UTP18 chr17 41820418 chr17 51287347 DEL MantaDEL:4:5634:5808:0:0:0 TRUTH 0 0 1337 19 17 39976670 17 49364708 0 19 UNEVALUABLE UNEVALUABLE
659_cAr TOP2A FAM117A chr17 40417606 chr17 49716941 DUP MantaDUP:TANDEM:46183:0:1:0:0:0 TRUTH 0 0 2725 191 17 38573858 17 47794303 0 191 EVALUABLE BAM_REFUTED
659_cAr TOP2A GIP chr17 40412591 chr17 48961745 INV MantaINV:4:5450:5663:1:0:0 TRUTH 0 0 1661 322 17 38568843 17 47039107 0 322 EVALUABLE BAM_REFUTED
659_cAr DSCAM MX2 chr21 40179368 chr21 41406840 INV MantaINV:52354:0:1:0:0:0 TRUTH 0 0 861 1040 21 41551295 21 42778767 0 861 EVALUABLE BAM_REFUTED
659_cAr MYO1D TOP2A chr17 32713565 chr17 40413275 DUP MantaDUP:TANDEM:4:5663:5665:2:0:0 TRUTH 0 0 19 3143 17 31040583 17 38569527 0 19 UNEVALUABLE UNEVALUABLE
659_cAr INTERGENIC ABCC3 chr17 32492103 chr17 50634942 DEL MantaDEL:45977:0:1:0:0:0 TRUTH 0 0 0 442 17 30819121 17 48712303 0 0 UNEVALUABLE UNEVALUABLE
659_cAr MYO1D KRT19 chr17 32579180 chr17 41527840 DEL MantaDEL:45934:0:1:0:0:0 TRUTH 0 0 2 1504 17 30906198 17 39684092 0 2 UNEVALUABLE UNEVALUABLE
659_cIX INTERGENIC CPS1 chr2 126975367 chr2 210556762 INV MantaINV:7924:0:1:0:0:0 TRUTH 0 0 27 667 2 127732943 2 211421486 0 27 EVALUABLE BAM_REFUTED
659_cTS BOLL AP1S3 chr2 197785141 chr2 223783392 INV MantaINV:6378:0:2:0:0:0 TRUTH 0 0 3060 0 2 198649865 2 224648109 0 0 UNEVALUABLE UNEVALUABLE
659_cTS PIK3CB TRPM1 chr3 138675530 chr15 31069609 BND MantaBND:8846:1:2:0:0:0:0 TRUTH 0 0 1 2376 3 138394372 15 31361812 0 1 UNEVALUABLE UNEVALUABLE
659_cTS INTERGENIC TESK1 chr9 28691486 chr9 35609483 INV MantaINV:18921:0:1:0:0:0 TRUTH 0 0 2 3104 9 28691484 9 35609480 0 2 UNEVALUABLE UNEVALUABLE
659_cTS INTERGENIC DHRS7B chr9 30619285 chr17 21178247 BND MantaBND:18923:0:1:0:0:0:1 TRUTH 0 0 0 487 9 30619283 17 21081560 0 0 UNEVALUABLE UNEVALUABLE
659_cTS NFX1 ARID3C chr9 33336517 chr9 34623627 INV MantaINV:18947:0:1:0:0:0 TRUTH 0 0 4 2594 9 33336515 9 34623624 0 4 UNEVALUABLE UNEVALUABLE
659_cTS INTERGENIC SLC5A2 chr16 8582268 chr16 31488675 INV MantaINV:28178:0:1:0:0:0 TRUTH 0 0 18 2568 16 8632270 16 31499996 0 18 UNEVALUABLE UNEVALUABLE
659_cTS INTERGENIC FAM57B chr16 11953014 chr16 30029481 INV MantaINV:28258:0:1:0:0:0 TRUTH 0 0 16 527 16 12046871 16 30040802 0 16 UNEVALUABLE UNEVALUABLE
659_cTS SPAG5 DHX8 chr17 28577808 chr17 43492717 INV MantaINV:29708:0:1:0:0:0 TRUTH 0 0 827 1312 17 26904826 17 41570085 0 827 EVALUABLE BAM_REFUTED
659_cck NFKB2 FGFR2 chr10 102397234 chr10 121480602 DUP MantaDUP:TANDEM:24192:2:3:0:1:0 TRUTH 0 0 1982 7262 10 104156991 10 123240116 0 1982 EVALUABLE BAM_REFUTED
659_cck INTERGENIC FGFR2 chr10 103264371 chr10 121480763 INV MantaINV:24192:1:3:0:0:0 TRUTH 0 0 7 7470 10 105024128 10 123240277 0 7 UNEVALUABLE UNEVALUABLE
659_cfy TACC3 FGFR3 chr4 1731154 chr4 1807113 DUP MantaDUP:TANDEM:5:1389:1390:0:0:0 TRUTH 0 0 905 14582 4 1732881 4 1808840 0 905 EVALUABLE BAM_REFUTED
659_cfy INTERGENIC HCFC1 chrX 145118431 chrX 153960146 DEL MantaDEL:44914:0:1:0:0:0 TRUTH 0 0 0 2050 X 144199951 X 153225597 0 0 UNEVALUABLE UNEVALUABLE
659_cuv COL16A1 FGFR2 chr1 31660761 chr10 121479264 BND MantaBND:803:0:1:0:0:0:1 TRUTH 0 0 1346 7369 1 32126362 10 123238778 0 1346 EVALUABLE BAM_REFUTED
659_cuv INTERGENIC KEAP1 chr19 10483233 chr19 10492046 DEL MantaDEL:27372:0:1:0:0:0 TRUTH 0 0 9 6037 19 10593909 19 10602722 0 9 UNEVALUABLE UNEVALUABLE
659_cwv INTERGENIC SLC12A2 chr5 128021854 chr5 128083964 DEL MantaDEL:13052:0:1:0:0:0 TRUTH 0 0 2 1509 5 127357546 5 127419656 0 2 UNEVALUABLE UNEVALUABLE
659_dMH CCDC148 TTN chr2 158209453 chr2 178782820 INV MantaINV:5839:0:1:0:0:0 TRUTH 0 0 2 1888 2 159065965 2 179647547 0 2 UNEVALUABLE UNEVALUABLE
659_dMH INTERGENIC HIPK3 chr3 169593659 chr11 33347959 BND MantaBND:7:1809:1816:0:0:0:1 TRUTH 0 0 7 1365 3 169311447 11 33369505 0 7 UNEVALUABLE UNEVALUABLE
659_dMH INTERGENIC ST6GAL1 chr3 182512112 chr3 187072926 INV MantaINV:8959:0:1:0:0:0 TRUTH 0 0 0 264 3 182229900 3 186790714 0 0 UNEVALUABLE UNEVALUABLE
659_dMH JAZF1 RARA chr7 28019146 chr17 40351992 BND MantaBND:15464:0:1:0:0:0:0 TRUTH 0 0 0 5634 7 28058765 17 38508244 0 0 UNEVALUABLE UNEVALUABLE
659_dMH ADRA1A SGSM1 chr8 26766083 chr22 24853489 BND MantaBND:17351:0:3:0:0:0:1 TRUTH 0 0 916 2 8 26623600 22 25249456 0 2 UNEVALUABLE UNEVALUABLE
659_dMH INTERGENIC FER1L6 chr8 117591198 chr8 124039934 INV MantaINV:18245:0:1:0:0:0 TRUTH 0 0 1 697 8 118603437 8 125052175 0 1 UNEVALUABLE UNEVALUABLE
659_dMH INTERGENIC TENM4 chr8 126828475 chr11 78669195 BND MantaBND:18518:0:1:0:0:0:1 TRUTH 0 0 0 3110 8 127840720 11 78380240 0 0 UNEVALUABLE UNEVALUABLE
659_dMH INTERGENIC ZBTB42 chr8 126947501 chr14 104801876 BND MantaBND:15720:1:2:0:0:0:0 TRUTH 0 0 6 3316 8 127959746 14 105268213 0 6 UNEVALUABLE UNEVALUABLE
659_dMH ZBTB42 INTERGENIC chr14 104802183 chr17 33578822 BND MantaBND:26800:0:1:0:0:0:0 TRUTH 0 0 2718 5 14 105268520 17 31905841 0 5 UNEVALUABLE UNEVALUABLE
659_dMH INTERGENIC VPS13C chr15 61474962 chr15 61911902 DUP MantaDUP:TANDEM:27404:0:1:0:0:0 TRUTH 0 0 2 671 15 61767161 15 62204101 0 2 UNEVALUABLE UNEVALUABLE
659_dT3 CREB1 PLEKHM3 chr2 207575402 chr2 208009107 DUP MantaDUP:TANDEM:8587:0:1:0:0:0 TRUTH 0 0 735 0 2 208440126 2 208873831 0 0 UNEVALUABLE UNEVALUABLE
659_dT3 INTERGENIC ADAM19 chr5 157477263 chr5 157477326 DUP MantaDUP:TANDEM:16843:0:1:0:0:0 TRUTH 539 0 1085 1093 5 156904271 5 156904334 539 1085 EVALUABLE BAM_CONFIRMED
659_dT3 PRKACA DNAJB1 chr19 14116101 chr19 14517451 DEL MantaDEL:43202:0:1:0:0:0 TRUTH 0 0 0 7293 19 14226913 19 14628263 0 0 UNEVALUABLE UNEVALUABLE
659_dfA INTERGENIC ZNF846 chr1 65239511 chr19 9757744 BND MantaBND:1373:0:1:0:0:0:1 TRUTH 0 0 9 1468 1 65705194 19 9868420 0 9 UNEVALUABLE UNEVALUABLE
659_dfA HOXA13 ATG9B chr7 27200043 chr7 151017665 INV MantaINV:13455:0:1:0:0:0 TRUTH 0 0 1106 1600 7 27239662 7 150714752 0 1106 EVALUABLE BAM_REFUTED
659_dfA PHLPP2 KLK1 chr16 71649950 chr19 50822641 BND MantaBND:25281:0:1:0:0:0:1 TRUTH 0 0 1198 1616 16 71683853 19 51325897 0 1198 EVALUABLE BAM_REFUTED
659_dfA ZNF385C TMPRSS2 chr17 42051541 chr21 41470728 BND MantaBND:26053:0:1:0:1:0:1 TRUTH 0 0 0 1084 17 40203559 21 42842655 0 0 UNEVALUABLE UNEVALUABLE
659_dvY KIAA0513 C17orf74 chr16 85077296 chr17 7427279 BND MantaBND:55795:0:1:0:0:0:0 TRUTH 0 0 560 3476 16 85110902 17 7330598 0 560 EVALUABLE BAM_REFUTED
659_dvY ALOX5 FREM2 chr10 45418201 chr13 38864347 BND MantaBND:40753:0:1:0:0:0:1 TRUTH 0 0 4 722 10 45913649 13 39438484 0 4 UNEVALUABLE UNEVALUABLE
659_dvY ADIPOR1 NAV2 chr1 202941657 chr11 19879731 BND MantaBND:6760:0:2:0:0:0:1 TRUTH 0 0 1202 1234 1 202910785 11 19901277 0 1202 EVALUABLE BAM_REFUTED
659_dvY SPATS2L INTERGENIC chr2 200477726 chr4 184230847 BND MantaBND:13139:0:2:0:0:0:0 TRUTH 0 0 1470 21 2 201342449 4 185152000 0 21 EVALUABLE BAM_REFUTED
659_dvY TACR1 INTERGENIC chr2 75053668 chr6 56813586 BND MantaBND:10192:0:1:0:0:0:0 TRUTH 0 0 1014 0 2 75280795 6 56678384 0 0 UNEVALUABLE UNEVALUABLE
659_dvY DMRT3 MYH2 chr9 988713 chr17 10525771 BND MantaBND:37188:0:1:0:0:0:1 TRUTH 0 0 0 1854 9 988713 17 10429088 0 0 UNEVALUABLE UNEVALUABLE
659_dvY PCYT1A PTPRD chr3 196241512 chr9 8933517 BND MantaBND:19485:0:1:0:0:0:1 TRUTH 0 0 638 0 3 195968383 9 8933517 0 0 UNEVALUABLE UNEVALUABLE
659_dvY SLC35G6 GAS7 chr17 7482926 chr17 9915535 INV MantaINV:56358:0:3:0:0:0 TRUTH 0 0 6036 2 17 7386245 17 9818852 0 2 UNEVALUABLE UNEVALUABLE
659_dvY KIAA0513 BCL6B chr16 85079570 chr17 7029201 BND MantaBND:55831:0:1:0:0:0:1 TRUTH 0 0 309 2959 16 85113176 17 6932520 0 309 EVALUABLE BAM_REFUTED
659_dvY GAS7 MED16 chr17 10009575 chr19 885913 BND MantaBND:56501:0:1:0:0:0:1 TRUTH 0 0 5 1446 17 9912892 19 885913 0 5 UNEVALUABLE UNEVALUABLE
659_dvY NAV2 INTERGENIC chr11 19879906 chr19 20384738 BND MantaBND:43107:0:1:0:0:0:1 TRUTH 0 0 1255 0 11 19901452 19 20495547 0 0 UNEVALUABLE UNEVALUABLE
659_dvY INTERGENIC FREM2 chr10 55338457 chr13 38692438 BND MantaBND:40945:0:1:0:0:0:0 TRUTH 0 0 0 1412 10 57098217 13 39266575 0 0 UNEVALUABLE UNEVALUABLE
659_dvY INTERGENIC CHD3 chr8 133157665 chr17 7890653 BND MantaBND:1:5218:5286:0:0:0:1 TRUTH 0 0 2 1236 8 134169909 17 7793971 0 2 UNEVALUABLE UNEVALUABLE
659_dvY SPATS2L INTERGENIC chr2 200477781 chr2 204458643 INV MantaINV:13139:0:8:0:0:0 TRUTH 0 0 1471 0 2 201342504 2 205323366 0 0 UNEVALUABLE UNEVALUABLE
659_dvY INTERGENIC CAMSAP2 chr1 199796930 chr1 200849241 DUP MantaDUP:TANDEM:6527:0:1:0:0:0 TRUTH 0 0 0 2407 1 199766058 1 200818369 0 0 UNEVALUABLE UNEVALUABLE
659_pO PIGM INTERGENIC chr1 160030560 chr20 63526281 BND MantaBND:3616:0:1:0:0:0:1 TRUTH 0 0 1915 12 1 160000350 20 62157634 0 12 UNEVALUABLE UNEVALUABLE
659_pO INTERGENIC GTPBP3 chr4 133098513 chr19 17341531 BND MantaBND:3:12120:12147:0:0:0:1 TRUTH 0 0 1 1825 4 134019668 19 17452340 0 1 UNEVALUABLE UNEVALUABLE
659_pO INTERGENIC TSHZ1 chr5 39993282 chr18 75287081 BND MantaBND:16470:0:1:0:0:0:0 TRUTH 0 0 3 3850 5 39993384 18 72999036 0 3 UNEVALUABLE UNEVALUABLE
659_pO METTL25 CLEC17A chr12 82377587 chr19 14592311 BND MantaBND:34216:0:2:0:0:0:1 TRUTH 0 0 3 375 12 82771366 19 14703123 0 3 UNEVALUABLE UNEVALUABLE
659_pO CHD6 INTERGENIC chr20 41423577 chr20 43206552 INV MantaINV:47274:0:1:0:0:0 TRUTH 0 0 545 0 20 40052217 20 41835192 0 0 UNEVALUABLE UNEVALUABLE
659_pO PTPRT TAF4 chr20 42573229 chr20 61999022 DEL MantaDEL:47323:0:1:0:0:0 TRUTH 0 0 2 729 20 41201869 20 60574078 0 2 UNEVALUABLE UNEVALUABLE
659_pO INTERGENIC HELZ2 chr20 52860848 chr20 63563031 DUP MantaDUP:TANDEM:3:13847:13848:1:0:0 TRUTH 0 0 1 2917 20 51477387 20 62194384 0 1 UNEVALUABLE UNEVALUABLE
659_rd NAB2 STAT6 chr12 57093322 chr12 57099366 INV MantaINV:2:2688:2702:0:0:0 TRUTH 0 0 5969 8256 12 57487105 12 57493149 0 5969 EVALUABLE BAM_REFUTED
659_sv CWH43 LPHN3 chr4 49032683 chr4 61961043 DUP MantaDUP:TANDEM:10800:0:4:0:0:0 TRUTH 0 0 590 5 4 49034700 4 62826761 0 5 UNEVALUABLE UNEVALUABLE
659_sv ETV6 EPS8 chr12 11875717 chr12 15788047 INV MantaINV:5:5197:5199:0:0:0 TRUTH 0 0 7824 0 12 12028651 12 15940981 0 0 UNEVALUABLE UNEVALUABLE
659_sv INTERGENIC B3GNT6 chr11 77028676 chr11 77040366 INV MantaINV:5:4982:4984:0:0:0 TRUTH 0 0 26 3643 11 76739720 11 76751410 0 26 EVALUABLE BAM_REFUTED
659_sv INTERGENIC ETV6 chr12 3071357 chr12 11866933 INV MantaINV:5:5164:5166:0:0:0 TRUTH 0 0 256 7674 12 3180523 12 12019867 0 256 EVALUABLE BAM_REFUTED
659_sv ERICH1 INTERGENIC chr8 664651 chr8 36283889 DEL MantaDEL:9826:1:2:0:0:0 TRUTH 0 0 1252 2 8 614651 8 36141407 0 2 UNEVALUABLE UNEVALUABLE
659_sv PAN3 INTERGENIC chr13 28288048 chr13 83851061 INV MantaINV:26724:0:1:0:0:0 TRUTH 0 0 386 1 13 28862185 13 84425196 0 1 UNEVALUABLE UNEVALUABLE
659_sv GREB1 INTERGENIC chr2 11585861 chr14 106877398 BND MantaBND:4441:0:1:0:0:0:0 TRUTH 0 0 503 2 2 11725987 14 107285606 0 2 UNEVALUABLE UNEVALUABLE
659_sv MLF2 CBX5 chr12 6748819 chr12 54263336 INV MantaINV:24683:0:1:0:0:0 TRUTH 0 0 794 16 12 6857985 12 54657120 0 16 UNEVALUABLE UNEVALUABLE
659_sv CECR6 FAM19A5 chr22 17120126 chr22 48642032 DEL MantaDEL:21484:1:3:0:0:0 TRUTH 0 0 2788 1 22 17601016 22 49037844 0 1 UNEVALUABLE UNEVALUABLE
659_sv CACNA1C ETV6 chr12 2554440 chr12 11876102 DUP MantaDUP:TANDEM:5:5197:5198:0:0:0 TRUTH 0 0 1 7659 12 2663606 12 12029036 0 1 UNEVALUABLE UNEVALUABLE
659_sv IPO7 PC chr11 9440580 chr11 66932557 INV MantaINV:14347:1:2:0:0:0 TRUTH 0 0 531 3 11 9462127 11 66700028 0 3 UNEVALUABLE UNEVALUABLE
659_sv ADAM18 IKBKB chr8 39660752 chr8 42272129 DUP MantaDUP:TANDEM:9763:1:2:0:1:0 TRUTH 0 0 7 795 8 39518271 8 42129647 0 7 UNEVALUABLE UNEVALUABLE
659_sv ABCA12 INTERGENIC chr2 214980211 chr2 219498086 DUP MantaDUP:TANDEM:6521:5:8:0:0:0 TRUTH 0 0 737 1374 2 215844935 2 220362808 0 737 EVALUABLE BAM_REFUTED
659_sv INTERGENIC FAT4 chr4 123742977 chr4 125479842 DUP MantaDUP:TANDEM:11569:0:1:0:0:0 TRUTH 0 0 0 634 4 124664132 4 126400997 0 0 UNEVALUABLE UNEVALUABLE
659_sv INTERGENIC FGFR1 chr8 36133248 chr8 38467828 DEL MantaDEL:5:3622:3623:0:0:0 TRUTH 0 0 8 6980 8 35990766 8 38325346 0 8 UNEVALUABLE UNEVALUABLE
659_sv ACER3 B3GNT6 chr11 77010713 chr11 77040659 INV MantaINV:5:4982:4983:0:0:0 TRUTH 0 0 36 2443 11 76721757 11 76751706 0 36 EVALUABLE BAM_REFUTED
659_w6 ARID1A KIAA1522 chr1 26771278 chr1 32747321 DEL MantaDEL:840:0:2:0:0:0 TRUTH 0 0 1414 16 1 27097769 1 33212922 0 16 UNEVALUABLE UNEVALUABLE
659_w6 CENPO B3GNT3 chr2 24812948 chr19 17808062 BND MantaBND:0:6682:6685:0:0:0:1 TRUTH 0 0 14 2083 2 25035817 19 17918871 0 14 UNEVALUABLE UNEVALUABLE
659_w6 INTERGENIC FANCC chr2 68433797 chr9 95110626 BND MantaBND:0:3540:3550:0:0:0:1 TRUTH 0 0 0 5461 2 68660929 9 97872908 0 0 UNEVALUABLE UNEVALUABLE
659_w6 ETV5 CUX1 chr3 186080671 chr7 102197905 BND MantaBND:0:1593:1623:0:0:0:1 TRUTH 0 0 8590 60 3 185798460 7 101841185 0 60 EVALUABLE BAM_REFUTED
659_w6 INTERGENIC MFGE8 chr5 55595967 chr15 88912768 BND MantaBND:0:5413:5415:0:0:0:0 TRUTH 0 0 8 2317 5 54891795 15 89455999 0 8 UNEVALUABLE UNEVALUABLE
659_w6 SLC25A16 TET1 chr10 68496533 chr10 68564752 DUP MantaDUP:TANDEM:19982:0:1:0:0:0 TRUTH 0 0 437 12 10 70256290 10 70324509 0 12 UNEVALUABLE UNEVALUABLE
659_w6 SAR1A GRIN2C chr10 70168961 chr17 74852108 BND MantaBND:19970:0:1:0:0:0:1 TRUTH 0 0 1 1157 10 71928717 17 72848247 0 1 UNEVALUABLE UNEVALUABLE
659_w6 ZNF503 INTERGENIC chr10 75401294 chr10 75441281 DEL MantaDEL:20033:0:1:0:0:0 TRUTH 0 0 1335 0 10 77161052 10 77201039 0 0 UNEVALUABLE UNEVALUABLE
659_w6 INTERGENIC TENC1 chr12 52857702 chr12 53054430 DUP MantaDUP:TANDEM:23043:0:1:0:0:0 TRUTH 0 0 8 1327 12 53251486 12 53448214 0 8 UNEVALUABLE UNEVALUABLE
659_w6 PXN DYNLL1 chr12 120215469 chr12 120494551 DUP MantaDUP:TANDEM:24012:0:1:0:0:0 TRUTH 0 0 2824 9 12 120653272 12 120932354 0 9 UNEVALUABLE UNEVALUABLE
659_w6 MARK3 PPP1R13B chr14 103482124 chr14 103737829 DUP MantaDUP:TANDEM:25789:0:1:0:0:0 TRUTH 0 0 24 879 14 103948461 14 104204166 0 24 EVALUABLE BAM_REFUTED
659_w6 ACSBG1 INTERGENIC chr15 78179652 chr15 78263458 DUP MantaDUP:TANDEM:26734:0:1:0:1:0 TRUTH 0 0 709 1 15 78471994 15 78555800 0 1 UNEVALUABLE UNEVALUABLE
659_w6 ACTN4 AC104534.3 chr19 38709897 chr19 38838475 DUP MantaDUP:TANDEM:31340:0:1:0:0:0 TRUTH 0 0 738 991 19 39200537 19 39329115 0 738 EVALUABLE BAM_REFUTED
659_wS BRCA1 NBR1 chr17 43124062 chr17 43176628 DEL MantaDEL:33869:0:1:0:0:0 TRUTH 0 0 6559 2 17 41276079 17 41328645 0 2 UNEVALUABLE UNEVALUABLE
659_wS TFE3 INTERGENIC chrX 49038281 chrX 69010212 INV MantaINV:11830:1:3:0:0:0 TRUTH 0 0 4095 0 X 48895806 X 68230055 0 0 UNEVALUABLE UNEVALUABLE
659_wS TFE3 NONO chrX 49038156 chrX 71299227 INV MantaINV:11830:1:2:0:1:0 TRUTH 0 0 3768 168 X 48895681 X 70519077 0 168 EVALUABLE BAM_REFUTED
659_wS TFE3 INTERGENIC chrX 49038189 chrX 69010218 DUP MantaDUP:TANDEM:11830:1:3:1:0:0 TRUTH 0 0 3903 0 X 48895714 X 68230061 0 0 UNEVALUABLE UNEVALUABLE
659_wS ZBTB21 SIK1 chr21 41991401 chr21 43421929 DEL MantaDEL:38301:0:1:1:0:0 TRUTH 0 0 4339 1405 21 43411510 21 44841809 0 1405 EVALUABLE BAM_REFUTED
659_3g MTOR FER chr1 11199548 chr5 108823515 BND MantaBND:450:0:1:2:0:0:0 TRUTH 0 0 3821 8 1 11259605 5 108159216 0 8 UNEVALUABLE UNEVALUABLE
659_3g GALM TPCN1 chr2 38671289 chr12 113260411 BND MantaBND:5806:0:1:0:0:0:1 TRUTH 0 0 0 820 2 38898431 12 113698216 0 0 UNEVALUABLE UNEVALUABLE
659_3g GALM TPCN1 chr2 38671308 chr12 113260403 BND MantaBND:5806:0:1:1:0:0:0 TRUTH 0 0 0 820 2 38898450 12 113698208 0 0 UNEVALUABLE UNEVALUABLE
659_3g INTERGENIC SAT1 chr2 39566399 chrX 23785746 BND MantaBND:5837:0:1:0:0:0:1 TRUTH 0 0 0 846 2 39793540 X 23803863 0 0 UNEVALUABLE UNEVALUABLE
659_3g STXBP5L GLI4 chr3 121384631 chr8 143276718 BND MantaBND:10524:0:1:0:0:0:0 TRUTH 0 0 0 1285 3 121103478 8 144358888 0 0 UNEVALUABLE UNEVALUABLE
659_3g STXBP5L GLI4 chr3 121384635 chr8 143276721 BND MantaBND:10524:0:1:1:0:0:1 TRUTH 0 0 0 1284 3 121103482 8 144358891 0 0 UNEVALUABLE UNEVALUABLE
659_3g MAP3K1 INTERGENIC chr5 56820515 chr5 74597183 DEL MantaDEL:10:1533:1534:0:0:0 TRUTH 0 0 2533 0 5 56116342 5 73893008 0 0 UNEVALUABLE UNEVALUABLE
659_3g INTERGENIC QTRT1 chr7 48153564 chr19 10712174 BND MantaBND:18928:0:1:2:0:0:1 TRUTH 0 0 42 964 7 48193161 19 10822850 0 42 EVALUABLE BAM_REFUTED
659_3g INTERGENIC QTRT1 chr7 48153566 chr19 10712180 BND MantaBND:18928:0:1:1:0:0:0 TRUTH 0 0 42 967 7 48193163 19 10822856 0 42 EVALUABLE BAM_REFUTED
659_3g LPCAT3 PDK2 chr12 7017708 chr17 50095806 BND MantaBND:28226:0:1:0:0:0:0 TRUTH 0 0 148 1248 12 7125012 17 48173170 0 148 EVALUABLE BAM_REFUTED
659_3g HNRNPL RPS19 chr19 38840344 chr19 41861710 DUP MantaDUP:TANDEM:10:5314:5315:2:0:0 TRUTH 0 0 1091 164 19 39330984 19 42365779 0 164 EVALUABLE BAM_REFUTED
659_3g RBM3 INTERGENIC chrX 48575632 chrX 50580074 INV MantaINV:43084:0:1:0:0:0 TRUTH 0 0 1177 0 X 48434020 X 50323074 0 0 UNEVALUABLE UNEVALUABLE
659_91 POLN INTERGENIC chr4 2240506 chr11 97607971 BND MantaBND:15643:0:2:0:0:0:1 TRUTH 0 0 1828 0 4 2242233 11 97478971 0 0 UNEVALUABLE UNEVALUABLE
659_91 CDH9 INTERGENIC chr5 26915788 chr5 33006476 DEL MantaDEL:2:6929:6930:0:0:0 TRUTH 0 0 582 10 5 26915896 5 33006582 0 10 UNEVALUABLE UNEVALUABLE
659_91 INTERGENIC LRIG3 chr5 27097593 chr12 58877703 BND MantaBND:2:15809:15811:0:0:0:1 TRUTH 0 0 2 1760 5 27097700 12 59271485 0 2 UNEVALUABLE UNEVALUABLE
659_91 ZC2HC1A SNX16 chr8 78717464 chr8 81810831 INV MantaINV:11210:0:2:0:0:0 TRUTH 0 0 628 2 8 79629699 8 82723066 0 2 UNEVALUABLE UNEVALUABLE
659_91 FAM222B PDK2 chr17 28814092 chr17 50109301 DEL MantaDEL:48821:0:1:0:0:0 TRUTH 0 0 12 417 17 27141110 17 48186665 0 12 UNEVALUABLE UNEVALUABLE
659_Dd TACC3 FGFR3 chr4 1737822 chr4 1807102 DUP MantaDUP:TANDEM:3:2366:2367:0:0:0 TRUTH 0 0 620 13952 4 1739549 4 1808829 0 620 EVALUABLE BAM_REFUTED
659_QC INTERGENIC PMS2 chr7 5123594 chr7 6004021 INV MantaINV:5:6396:6397:0:0:0 TRUTH 0 0 15 1268 7 5163225 7 6043652 0 15 UNEVALUABLE UNEVALUABLE
659_QC THSD7A GDAP1L1 chr7 11379222 chr20 44280285 BND MantaBND:22878:0:1:0:0:0:0 TRUTH 0 0 1051 0 7 11418849 20 42908925 0 0 UNEVALUABLE UNEVALUABLE
659_QC MAP3K12 INTERGENIC chr12 53486770 chr12 59622994 INV MantaINV:5:10859:10860:0:0:0 TRUTH 0 0 3473 4 12 53880554 12 60016775 0 4 UNEVALUABLE UNEVALUABLE
659_QC INTERGENIC MARCH9 chr12 57587734 chr12 57758121 INV MantaINV:5:11261:11262:0:0:0 TRUTH 0 0 2 1269 12 57981517 12 58151904 0 2 UNEVALUABLE UNEVALUABLE
659_QC FRS2 INTERGENIC chr12 69569077 chrX 19522144 BND MantaBND:5:11584:11588:0:0:0:1 TRUTH 0 0 690 4 12 69962857 X 19540262 0 4 UNEVALUABLE UNEVALUABLE
659_QC PPFIA2 OFD1 chr12 81545113 chrX 13751257 BND MantaBND:37362:0:1:0:0:0:0 TRUTH 0 0 0 176 12 81938892 X 13769376 0 0 UNEVALUABLE UNEVALUABLE
659_QC CDKL5 RPS6KA3 chrX 18629836 chrX 20207675 INV MantaINV:5:18306:18307:0:0:0 TRUTH 0 0 967 0 X 18647956 X 20225793 0 0 UNEVALUABLE UNEVALUABLE
659_QC UBA1 INTERGENIC chrX 47211175 chrX 55321914 INV MantaINV:53849:0:1:0:0:0 TRUTH 0 0 660 0 X 47070574 X 55348347 0 0 UNEVALUABLE UNEVALUABLE
659_b4x ZBTB48 RBM6 chr1 6580609 chr3 49963575 BND MantaBND:729:0:1:0:0:0:1 TRUTH 0 0 2521 3 1 6640669 3 50001008 0 3 UNEVALUABLE UNEVALUABLE
659_b4x INTERGENIC AHNAK chr4 149134662 chr11 62533832 BND MantaBND:56180:0:1:0:0:0:1 TRUTH 0 0 3 2607 4 150055814 11 62301304 0 3 UNEVALUABLE UNEVALUABLE
659_b4x SND1 BRAF chr7 127747228 chr7 140793879 INV MantaINV:83004:0:1:0:0:0 TRUTH 0 0 2 5359 7 127387282 7 140493679 0 2 UNEVALUABLE UNEVALUABLE
659_b6L ADAR INTERGENIC chr1 154601806 chr1 175046357 DEL MantaDEL:11:585:586:0:0:0 TRUTH 0 0 4139 32 1 154574282 1 175015493 0 32 EVALUABLE BAM_REFUTED
659_b6L IGSF8 DGKI chr1 160095214 chr7 137497573 BND MantaBND:79:1:2:0:0:0:1 TRUTH 0 0 1267 2 1 160065004 7 137182319 0 2 UNEVALUABLE UNEVALUABLE
659_b6L CCDC174 MAGI1 chr3 14666899 chr3 65848175 INV MantaINV:9025:0:1:0:0:0 TRUTH 0 0 465 0 3 14708406 3 65833850 0 0 UNEVALUABLE UNEVALUABLE
659_b6L JARID2 KDM1B chr6 15520216 chr6 18162655 INV MantaINV:16218:0:1:0:0:0 TRUTH 0 0 644 181 6 15520447 6 18162886 0 181 EVALUABLE BAM_REFUTED
659_b6L INTERGENIC ABCC10 chr6 25148235 chr6 43436142 DUP MantaDUP:TANDEM:16363:0:1:0:0:0 TRUTH 0 0 1 1899 6 25148463 6 43403880 0 1 UNEVALUABLE UNEVALUABLE
659_b6L INTERGENIC ZNF318 chr6 40198007 chr6 43357228 INV MantaINV:16753:0:1:0:0:0 TRUTH 0 0 0 1867 6 40165746 6 43324966 0 0 UNEVALUABLE UNEVALUABLE
659_b6L WISP1 GRASP chr8 133211925 chr12 52008514 BND MantaBND:22143:0:1:0:0:0:1 TRUTH 0 0 0 2533 8 134224168 12 52402298 0 0 UNEVALUABLE UNEVALUABLE
659_b6L WISP1 GRASP chr8 133211926 chr12 52008513 BND MantaBND:22143:0:1:2:0:0:0 TRUTH 0 0 0 2535 8 134224169 12 52402297 0 0 UNEVALUABLE UNEVALUABLE
659_b6L INTERGENIC CEBPA chr19 33253191 chr19 33302091 INV MantaINV:11:7722:7724:0:1:0 TRUTH 0 0 0 4848 19 33744097 19 33792997 0 0 UNEVALUABLE UNEVALUABLE
659_b6L BCAS1 KREMEN1 chr20 53944588 chr22 29125405 BND MantaBND:21354:0:1:0:0:0:0 TRUTH 0 0 380 751 20 52561127 22 29521393 0 380 EVALUABLE BAM_REFUTED
659_b6L BCAS1 WBP2NL chr20 53944903 chr22 41998860 BND MantaBND:38618:0:1:0:0:0:1 TRUTH 0 0 382 547 20 52561442 22 42394864 0 382 EVALUABLE BAM_REFUTED
659_b6L BCAS1 MORC2 chr20 53946298 chr22 30936591 BND MantaBND:38626:0:1:0:0:0:0 TRUTH 0 0 0 1219 20 52562837 22 31332578 0 0 UNEVALUABLE UNEVALUABLE
659_b6L KREMEN1 MORC2 chr22 29125395 chr22 30954290 INV MantaINV:21354:1:2:0:1:0 TRUTH 0 0 751 1 22 29521383 22 31350276 0 1 UNEVALUABLE UNEVALUABLE
659_b6L EMID1 RBFOX2 chr22 29206061 chr22 35834023 INV MantaINV:39520:0:2:0:0:0 TRUTH 0 0 407 0 22 29602050 22 36230070 0 0 UNEVALUABLE UNEVALUABLE
659_b6L MORC2 RBFOX2 chr22 30936551 chr22 35833487 INV MantaINV:38626:1:2:0:0:0 TRUTH 0 0 1213 0 22 31332538 22 36229534 0 0 UNEVALUABLE UNEVALUABLE
659_bCu ZNF214 PTPN5 chr11 7000909 chr11 18761877 INV MantaINV:34256:0:1:0:0:0 TRUTH 0 0 3439 1 11 7022140 11 18783424 0 1 UNEVALUABLE UNEVALUABLE
659_bCu ALK INTERGENIC chr2 29226063 chr2 228322898 DUP MantaDUP:TANDEM:2:616:619:0:0:0 TRUTH 0 0 8231 2 2 29448929 2 229187614 0 2 UNEVALUABLE UNEVALUABLE
659_bCu ART5 INTERGENIC chr11 3638826 chr11 12668340 DUP MantaDUP:TANDEM:33987:0:1:0:0:0 TRUTH 0 0 1108 0 11 3660056 11 12689887 0 0 UNEVALUABLE UNEVALUABLE
659_bCu ALK TNS1 chr2 29225941 chr2 217875254 DEL MantaDEL:2:616:617:0:0:0 TRUTH 0 0 8296 0 2 29448807 2 218739977 0 0 UNEVALUABLE UNEVALUABLE
659_bCu INTERGENIC GAS2 chr11 7928834 chr11 22811881 DUP MantaDUP:TANDEM:34251:0:1:0:0:0 TRUTH 0 0 705 633 11 7950381 11 22833427 0 633 EVALUABLE BAM_REFUTED
659_bOh ALK INTERGENIC chr2 29225398 chr8 122076995 BND MantaBND:3826:0:2:0:0:0:1 TRUTH 0 0 7948 0 2 29448264 8 123089234 0 0 UNEVALUABLE UNEVALUABLE
659_bOh ALK EML4 chr2 29225398 chr2 42316346 INV MantaINV:3826:0:1:0:0:0 TRUTH 0 0 7948 259 2 29448264 2 42543486 0 259 EVALUABLE BAM_REFUTED
659_bgw PLCH2 PANK4 chr1 2504965 chr1 2508893 DEL MantaDEL:17:0:1:0:0:0 TRUTH 0 0 2451 599 1 2436404 1 2440332 0 599 EVALUABLE BAM_REFUTED
659_bgw INTERGENIC AR chr9 87944836 chrX 67546653 BND MantaBND:2:2682:2695:0:0:0:0 TRUTH 2 2 1319 5602 9 90559751 X 66766495 4 1319 EVALUABLE BAM_CONFIRMED
659_bgw INTERGENIC DIP2A chr21 27185415 chr21 46498821 DEL MantaDEL:41060:0:1:0:0:0 TRUTH 0 0 1 1522 21 28557734 21 47918734 0 1 UNEVALUABLE UNEVALUABLE
659_buS SLC12A6 LENG9 chr15 34337410 chr19 54462319 BND MantaBND:65766:1:2:0:0:0:1 TRUTH 0 0 4 3163 15 34629611 19 54973499 0 4 UNEVALUABLE UNEVALUABLE
659_buS BRD4 LENG8 chr19 15250532 chr19 54460718 INV MantaINV:5:5703:5704:0:0:0 TRUTH 0 0 10881 2613 19 15361343 19 54971898 0 2613 EVALUABLE BAM_REFUTED
659_c53 ATP7B INTERGENIC chr13 51950032 chr17 13839823 BND MantaBND:0:6232:6233:0:1:0:0 TRUTH 0 0 3432 3 13 52524168 17 13743140 0 3 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B INTERGENIC chr13 51950084 chr13 57065836 DEL MantaDEL:0:6232:6237:1:0:0 TRUTH 0 0 3399 0 13 52524220 13 57639970 0 0 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B INTERGENIC chr13 51950141 chr17 13836006 BND MantaBND:0:6232:6240:5:0:0:0 TRUTH 0 0 3346 1 13 52524277 17 13739323 0 1 UNEVALUABLE UNEVALUABLE
659_c53 CLCN4 ATXN3L chrX 10184586 chrX 13319294 DEL MantaDEL:29553:0:1:0:0:0 TRUTH 0 0 173 1749 X 10152626 X 13337413 0 173 EVALUABLE BAM_REFUTED
659_c53 ATP7B INTERGENIC chr13 51950141 chr17 13839542 BND MantaBND:0:6232:6233:3:0:0:1 TRUTH 0 0 3346 6 13 52524277 17 13742859 0 6 UNEVALUABLE UNEVALUABLE
659_c53 MAS1L INTERGENIC chr6 29487554 chr6 29489473 DUP MantaDUP:TANDEM:5231:1:3:0:0:0 TRUTH 0 0 3439 2 6 29455331 6 29457250 0 2 UNEVALUABLE UNEVALUABLE
659_c53 INTERGENIC ARVCF chr20 18252185 chr22 19978923 BND MantaBND:3693:2:3:0:0:0:0 TRUTH 0 0 0 1229 20 18232829 22 19966446 0 0 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B INTERGENIC chr13 51950146 chr13 57804807 INV MantaINV:0:6232:6245:0:0:0 TRUTH 0 0 3335 5 13 52524282 13 58378941 0 5 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B INTERGENIC chr13 51950079 chr13 57066119 INV MantaINV:0:6232:6237:0:0:0 TRUTH 0 0 3408 0 13 52524215 13 57640253 0 0 UNEVALUABLE UNEVALUABLE
659_c53 ATXN3L NHS chrX 13319665 chrX 17701949 DEL MantaDEL:29575:0:1:0:0:0 TRUTH 0 0 1393 0 X 13337784 X 17720069 0 0 UNEVALUABLE UNEVALUABLE
659_c53 MAS1L INTERGENIC chr6 29487536 chr6 29488985 DEL MantaDEL:5231:1:4:0:0:0 TRUTH 0 0 3489 6 6 29455313 6 29456762 0 6 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B GLP2R chr13 51950154 chr17 9849240 BND MantaBND:0:6232:6242:0:0:0:1 TRUTH 0 0 3317 6 13 52524290 17 9752557 0 6 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B INTERGENIC chr13 51950032 chr13 57028583 INV MantaINV:0:6232:6234:0:1:0 TRUTH 0 0 3432 0 13 52524168 13 57602717 0 0 UNEVALUABLE UNEVALUABLE
659_c53 WRAP53 GUCY2D chr17 7690458 chr17 8004029 INV MantaINV:24336:0:1:0:0:0 TRUTH 0 0 19 2414 17 7593776 17 7907347 0 19 UNEVALUABLE UNEVALUABLE
659_c53 INTERGENIC GLP2R chr6 58326631 chr17 9857513 BND MantaBND:11707:0:1:0:0:0:1 TRUTH 0 0 0 645 6 58652909 17 9760830 0 0 UNEVALUABLE UNEVALUABLE
659_c53 INTERGENIC MB21D2 chr3 192768796 chr3 192798773 DEL MantaDEL:7728:0:1:0:0:0 TRUTH 0 0 35 4264 3 192486585 3 192516562 0 35 EVALUABLE BAM_REFUTED
659_c53 ATP7B INTERGENIC chr13 51950087 chr17 13812960 BND MantaBND:0:6232:6236:1:0:0:1 TRUTH 0 0 3398 12 13 52524223 17 13716277 0 12 UNEVALUABLE UNEVALUABLE
659_c53 ATP7B PCDH9 chr13 51950068 chr13 66469491 DEL MantaDEL:0:6232:6239:0:0:0 TRUTH 0 0 3417 0 13 52524204 13 67043623 0 0 UNEVALUABLE UNEVALUABLE
659_cAd PARK2 PACRG chr6 162526569 chr6 162727624 DEL MantaDEL:20362:0:1:0:0:0 TRUTH 0 0 31 2539 6 162947601 6 163148656 0 31 EVALUABLE BAM_REFUTED
659_cAd CLDN5 INTERGENIC chr22 19523803 chr22 19571705 INV MantaINV:46952:0:1:0:0:0 TRUTH 0 0 2927 2 22 19511326 22 19559228 0 2 UNEVALUABLE UNEVALUABLE
659_cAd RSRC2 ZNF540 chr12 122514196 chr19 37613124 BND MantaBND:34098:0:1:0:0:0:1 TRUTH 0 0 689 1882 12 122998743 19 38104025 0 689 EVALUABLE BAM_REFUTED
659_cAd RNMT ZNF74 chr18 13757904 chr22 20405982 BND MantaBND:42719:0:1:1:0:0:1 TRUTH 0 0 1 4924 18 13757903 22 20760272 0 1 UNEVALUABLE UNEVALUABLE
659_cAd MORC1 TFIP11 chr3 109109767 chr22 26506856 BND MantaBND:11349:0:1:0:0:0:1 TRUTH 0 0 0 1369 3 108828614 22 26902822 0 0 UNEVALUABLE UNEVALUABLE
659_cCU GOLPH3L SEMA6C chr1 150647592 chr1 151135214 INV MantaINV:3771:0:1:0:0:0 TRUTH 0 0 2 1835 1 150620068 1 151107690 0 2 UNEVALUABLE UNEVALUABLE
659_cCU SELENBP1 NSMCE2 chr1 151369890 chr8 125142529 BND MantaBND:4152:0:1:0:0:0:1 TRUTH 0 0 1521 7 1 151342366 8 126154771 0 7 UNEVALUABLE UNEVALUABLE
659_cCU CDC20B ARRB2 chr5 55143621 chr17 4719306 BND MantaBND:19399:0:1:0:0:0:1 TRUTH 0 0 592 1046 5 54439449 17 4622601 0 592 EVALUABLE BAM_REFUTED
659_cCU ZNF608 CSF1R chr5 124726522 chr5 150054371 INV MantaINV:3:3271:3294:0:0:0 TRUTH 0 0 0 3230 5 124062215 5 149433934 0 0 UNEVALUABLE UNEVALUABLE
659_cCU CDX1 GM2A chr5 150169824 chr5 151269369 DUP MantaDUP:TANDEM:21241:0:2:0:0:0 TRUTH 0 0 0 1133 5 149549387 5 150648930 0 0 UNEVALUABLE UNEVALUABLE
659_cCU INTERGENIC MYL6 chr6 72594158 chr12 56159636 BND MantaBND:23983:0:1:0:0:0:1 TRUTH 0 0 1 1964 6 73303887 12 56553420 0 1 UNEVALUABLE UNEVALUABLE
659_cCU DUS4L ZFPM2 chr7 107573785 chr8 105623808 BND MantaBND:3:4394:4397:0:0:0:0 TRUTH 0 0 839 0 7 107214230 8 106636036 0 0 UNEVALUABLE UNEVALUABLE
659_cCU RP1 RDH10 chr8 54621145 chr8 73309281 INV MantaINV:3:4941:4943:0:0:0 TRUTH 0 0 2366 0 8 55533705 8 74221516 0 0 UNEVALUABLE UNEVALUABLE
659_cCU TOX INTERGENIC chr8 58838227 chr8 63403208 DUP MantaDUP:TANDEM:30124:0:1:0:0:0 TRUTH 0 0 840 1 8 59750786 8 64315766 0 1 UNEVALUABLE UNEVALUABLE
659_cCU INTERGENIC ARRB2 chr8 92765331 chr17 4719362 BND MantaBND:19399:1:2:0:0:0:0 TRUTH 0 0 3 1017 8 93777559 17 4622657 0 3 UNEVALUABLE UNEVALUABLE
659_cCU RIMS2 INTERGENIC chr8 103819253 chr8 128256395 INV MantaINV:3:5426:5427:0:0:0 TRUTH 0 0 852 0 8 104831481 8 129268641 0 0 UNEVALUABLE UNEVALUABLE
659_cCU RIMS2 RP11-127H5.1 chr8 103819453 chr8 104631404 INV MantaINV:3:5426:5428:0:0:0 TRUTH 0 0 855 1 8 104831681 8 105643632 0 1 UNEVALUABLE UNEVALUABLE
659_cCU ENY2 ZNF578 chr8 109343796 chr19 52511280 BND MantaBND:31777:0:1:0:0:0:1 TRUTH 0 0 367 4599 8 110356025 19 53014533 0 367 EVALUABLE BAM_REFUTED
659_cCU DYNC1H1 WDR20 chr14 102005198 chr14 102195343 DUP MantaDUP:TANDEM:46825:0:1:0:0:0 TRUTH 0 0 1849 812 14 102471535 14 102661680 0 812 EVALUABLE BAM_REFUTED
659_cCU INTERGENIC PRKCG chr16 28603894 chr19 53900462 BND MantaBND:49547:0:1:0:0:0:1 TRUTH 0 0 107 1836 16 28615215 19 54403716 0 107 EVALUABLE BAM_REFUTED
659_cCU TUFM INTERGENIC chr16 28843014 chr19 51139514 BND MantaBND:38461:1:2:0:0:0:1 TRUTH 0 0 745 2 16 28854335 19 51642771 0 2 UNEVALUABLE UNEVALUABLE
659_cCU TUFM KRT28 chr16 28843856 chr17 40795337 BND MantaBND:3:9037:9038:0:0:0:1 TRUTH 0 0 1995 4 16 28855177 17 38951589 0 4 UNEVALUABLE UNEVALUABLE
659_cCU CCL13 INTERGENIC chr17 34356558 chr17 40809529 INV MantaINV:51955:0:1:0:0:0 TRUTH 0 0 235 0 17 32683577 17 38965781 0 0 UNEVALUABLE UNEVALUABLE
659_cCU MSL1 CGB5 chr17 40126729 chr19 49045026 BND MantaBND:52329:0:2:0:0:0:0 TRUTH 0 0 686 2338 17 38282982 19 49548283 0 686 EVALUABLE BAM_REFUTED
659_cCU FBN3 CERS4 chr19 8075078 chr19 8219095 DUP MantaDUP:TANDEM:56395:0:1:0:0:0 TRUTH 0 0 1240 8 19 8139962 19 8283979 0 8 UNEVALUABLE UNEVALUABLE
659_cCU PALM3 UPB1 chr19 14053774 chr22 24509285 BND MantaBND:34610:1:2:0:0:0:0 TRUTH 0 0 2796 1 19 14164586 22 24905253 0 1 UNEVALUABLE UNEVALUABLE
659_cCU SLC1A6 MPV17L2 chr19 14963620 chr19 18193414 INV MantaINV:56866:0:1:0:0:0 TRUTH 0 0 11 1888 19 15074432 19 18304224 0 11 UNEVALUABLE UNEVALUABLE
659_cCU TSHZ2 PPDPF chr20 53194491 chr20 63521695 INV MantaINV:3:12483:12507:0:0:0 TRUTH 0 0 0 1593 20 51811030 20 62153048 0 0 UNEVALUABLE UNEVALUABLE
659_cCU INTERGENIC HUNK chr21 24273089 chr21 31999073 DEL MantaDEL:61536:0:1:0:0:0 TRUTH 0 0 6 1759 21 25645402 21 33371386 0 6 UNEVALUABLE UNEVALUABLE
659_cTi KRIT1 TSPAN8 chr7 92241027 chr12 71175993 BND MantaBND:25307:0:1:0:0:0:1 TRUTH 0 0 308 1 7 91870341 12 71569773 0 1 UNEVALUABLE UNEVALUABLE
659_cst GBP7 GBP4 chr1 89133433 chr1 89186466 DEL MantaDEL:1754:0:1:0:0:0 TRUTH 8 1 508 601 1 89599116 1 89652149 9 508 EVALUABLE BAM_CONFIRMED
659_cst RAF1 ROBO2 chr3 12602647 chr3 76960377 DEL MantaDEL:2:1584:1585:0:0:0 TRUTH 0 0 5951 0 3 12644146 3 77009528 0 0 UNEVALUABLE UNEVALUABLE
659_cst RAF1 INTERGENIC chr3 12605823 chr17 73155263 BND MantaBND:2:1588:1589:0:0:0:1 TRUTH 0 0 6031 13 3 12647322 17 71151402 0 13 UNEVALUABLE UNEVALUABLE
659_cst GPR124 INTERGENIC chr8 37834003 chr14 49366730 BND MantaBND:2:3804:3836:0:0:0:1 TRUTH 0 0 3522 5 8 37691521 14 49833448 0 5 UNEVALUABLE UNEVALUABLE
659_cst LRRC20 ABHD15 chr10 70317913 chr17 29566878 BND MantaBND:23965:0:1:0:0:0:1 TRUTH 0 0 0 1862 10 72077669 17 27893896 0 0 UNEVALUABLE UNEVALUABLE
659_cst CLPB YJEFN3 chr11 72406945 chr19 19528971 BND MantaBND:26006:0:1:0:0:0:1 TRUTH 0 0 0 2124 11 72117989 19 19639780 0 0 UNEVALUABLE UNEVALUABLE
659_cst RAB6A CTC-260F20.3 chr11 73742028 chr19 19533178 BND MantaBND:26006:5:6:0:0:0:0 TRUTH 0 0 4 1583 11 73453073 19 19643987 0 4 UNEVALUABLE UNEVALUABLE
659_cst INTERGENIC CTC-260F20.3 chr11 73867197 chr19 19533406 BND MantaBND:26006:4:5:1:0:0:0 TRUTH 0 0 3 2065 11 73578242 19 19644215 0 3 UNEVALUABLE UNEVALUABLE
659_cst INTERGENIC CTC-260F20.3 chr11 73867201 chr19 19533128 BND MantaBND:26006:4:5:0:0:0:1 TRUTH 0 0 3 1502 11 73578246 19 19643937 0 3 UNEVALUABLE UNEVALUABLE
659_cst SLCO2B1 INTERGENIC chr11 75204535 chr19 22199484 BND MantaBND:26277:0:1:0:0:0:0 TRUTH 0 0 639 5 11 74915580 19 22382286 0 5 UNEVALUABLE UNEVALUABLE
659_cst INTERGENIC MAST3 chr11 77046434 chr19 18145854 BND MantaBND:26127:0:1:0:0:0:1 TRUTH 0 0 0 639 11 76757481 19 18256664 0 0 UNEVALUABLE UNEVALUABLE
659_cst DLG2 CA4 chr11 84185155 chr17 60150049 BND MantaBND:26346:0:1:0:0:0:0 TRUTH 0 0 0 272 11 83896198 17 58227410 0 0 UNEVALUABLE UNEVALUABLE
659_cst INTERGENIC DMXL2 chr15 39784928 chr15 51488054 DEL MantaDEL:31352:0:1:0:0:0 TRUTH 0 0 0 752 15 40077129 15 51780251 0 0 UNEVALUABLE UNEVALUABLE
659_cst PIF1 SKOR1 chr15 64824879 chr15 67830214 DEL MantaDEL:31787:0:1:0:0:0 TRUTH 0 0 88 380 15 65117078 15 68122552 0 88 EVALUABLE BAM_REFUTED
659_cst SPAG9 SMARCA4 chr17 51046511 chr19 11029238 BND MantaBND:35086:0:1:0:0:0:0 TRUTH 0 0 1044 1 17 49123872 19 11139914 0 1 UNEVALUABLE UNEVALUABLE
659_cst NACA2 HELZ chr17 61591033 chr17 67129408 DEL MantaDEL:2:7455:7456:0:0:0 TRUTH 0 0 2235 35 17 59668394 17 65125524 0 35 EVALUABLE BAM_REFUTED
659_cst INTERGENIC SON chr17 67717622 chr21 33550530 BND MantaBND:35704:0:1:0:0:0:1 TRUTH 0 0 604 2819 17 65713738 21 34922836 0 604 EVALUABLE BAM_REFUTED
659_cst TRIM65 EXOC7 chr17 75890903 chr17 76089701 DUP MantaDUP:TANDEM:36100:0:1:0:0:0 TRUTH 0 0 1828 643 17 73886984 17 74085782 0 643 EVALUABLE BAM_REFUTED
659_cst PRCD DNASE2 chr17 76540997 chr19 12878565 BND MantaBND:36061:0:1:0:0:0:1 TRUTH 0 0 337 1616 17 74537079 19 12989379 0 337 EVALUABLE BAM_REFUTED
659_cst PNPLA6 FBN3 chr19 7554935 chr19 8128148 INV MantaINV:37528:0:1:0:0:0 TRUTH 0 0 1415 2 19 7619821 19 8193032 0 2 UNEVALUABLE UNEVALUABLE
659_cst YJEFN3 INTERGENIC chr19 19529023 chr19 21882283 DEL MantaDEL:26006:1:25:0:0:0 TRUTH 0 0 2238 2 19 19639832 19 22065085 0 2 UNEVALUABLE UNEVALUABLE
659_cst YJEFN3 INTERGENIC chr19 19529055 chr19 21881614 DUP MantaDUP:TANDEM:26006:1:9:0:0:0 TRUTH 0 0 2261 2 19 19639864 19 22064416 0 2 UNEVALUABLE UNEVALUABLE
659_cst CTC-260F20.3 INTERGENIC chr19 19533355 chr19 21881655 INV MantaINV:26006:5:9:1:0:0 TRUTH 0 0 1843 2 19 19644164 19 22064457 0 2 UNEVALUABLE UNEVALUABLE
659_cuO MYB NFIB chr6 135213828 chr9 14116146 BND MantaBND:29022:0:1:0:0:0:1 TRUTH 0 0 6519 1068 6 135534966 9 14116145 0 1068 EVALUABLE BAM_REFUTED
659_d01 PDLIM3 POLE chr4 185528517 chr12 132641792 BND MantaBND:12354:0:1:0:0:0:1 TRUTH 0 0 0 3695 4 186449671 12 133218378 0 0 UNEVALUABLE UNEVALUABLE
659_d0M SH3PXD2B INTERGENIC chr5 172394613 chr5 172503775 DEL MantaDEL:23725:0:1:0:0:0 TRUTH 0 0 474 27 5 171821617 5 171930779 0 27 EVALUABLE BAM_REFUTED
659_d0V TNPO3 INTERGENIC chr7 128974882 chr7 129064778 DUP MantaDUP:TANDEM:18106:0:2:0:0:0 TRUTH 0 0 462 7 7 128614936 7 128704832 0 7 UNEVALUABLE UNEVALUABLE
659_d0V INTERGENIC DCTPP1 chr16 30346043 chr16 30424465 DUP MantaDUP:TANDEM:2:5971:5972:0:0:0 TRUTH 0 0 0 1707 16 30357364 16 30435786 0 0 UNEVALUABLE UNEVALUABLE
659_d0V INTERGENIC STK11 chr19 1202045 chr19 1207119 DEL MantaDEL:35914:0:2:0:0:0 TRUTH 0 0 14 4335 19 1202044 19 1207118 0 14 UNEVALUABLE UNEVALUABLE
659_d0V TRIM32 INTERGENIC chr9 116697742 chr11 62018588 BND MantaBND:21370:0:1:0:0:0:1 TRUTH 0 0 2650 23 9 119460021 11 61786060 0 23 EVALUABLE BAM_REFUTED
659_d0V INTERGENIC MT1X chr1 16241237 chr16 56683957 BND MantaBND:522:0:3:0:0:0:1 TRUTH 0 0 1349 1398 1 16567732 16 56717869 0 1349 EVALUABLE BAM_REFUTED
659_d0V INTERGENIC TRIM52 chr5 181253363 chr5 181260754 INV MantaINV:2:2398:2399:0:0:0 TRUTH 0 0 19 2697 5 180680363 5 180687755 0 19 UNEVALUABLE UNEVALUABLE
659_d13 INTERGENIC EPHA2 chr1 16100756 chr1 16133293 DUP MantaDUP:TANDEM:371:0:1:0:0:0 TRUTH 0 0 21 2249 1 16427251 1 16459788 0 21 EVALUABLE BAM_REFUTED
659_d13 CDCP2 CYB5RL chr1 54151055 chr1 54174699 DUP MantaDUP:TANDEM:1283:0:1:0:0:0 TRUTH 0 0 3 655 1 54616728 1 54640372 0 3 UNEVALUABLE UNEVALUABLE
659_d13 ABCG5 ABCG8 chr2 43837863 chr2 43842757 DUP MantaDUP:TANDEM:4989:0:1:0:0:0 TRUTH 0 0 575 1 2 44065002 2 44069896 0 1 UNEVALUABLE UNEVALUABLE
659_d13 INTERGENIC COL11A2 chr6 33162044 chr6 33168565 DUP MantaDUP:TANDEM:14190:0:1:0:0:0 TRUTH 0 0 2 1175 6 33129821 6 33136342 0 2 UNEVALUABLE UNEVALUABLE
659_d13 KIF13B WSB2 chr8 29176491 chr12 118034266 BND MantaBND:17955:0:1:0:0:0:1 TRUTH 0 0 202 739 8 29034008 12 118472071 0 202 EVALUABLE BAM_REFUTED
659_d13 EXT1 RYR1 chr8 118110240 chr19 38472903 BND MantaBND:2:1968:1969:0:0:0:1 TRUTH 0 0 1992 434 8 119122479 19 38963543 0 434 EVALUABLE BAM_REFUTED
659_d13 INTERGENIC BRCA1 chr9 33714291 chr17 43125129 BND MantaBND:19604:1:2:0:0:0:0 TRUTH 0 0 0 6505 9 33714289 17 41277146 0 0 UNEVALUABLE UNEVALUABLE
659_d13 INTERGENIC BRCA1 chr9 33714882 chr17 43122848 BND MantaBND:19616:0:1:0:0:0:1 TRUTH 0 0 0 3781 9 33714880 17 41274865 0 0 UNEVALUABLE UNEVALUABLE
659_d13 BRSK2 INTERGENIC chr11 1436048 chr19 50483341 BND MantaBND:2:2440:2442:0:0:0:1 TRUTH 0 0 310 4 11 1457278 19 50986598 0 4 UNEVALUABLE UNEVALUABLE
659_d13 F2 CKAP5 chr11 46726789 chr11 46766280 DUP MantaDUP:TANDEM:23165:0:1:0:1:0 TRUTH 0 0 1601 3 11 46748339 11 46787830 0 3 UNEVALUABLE UNEVALUABLE
659_d13 INTERGENIC NME1-NME2 chr12 120282382 chr17 51166954 BND MantaBND:5239:1:3:1:0:0:1 TRUTH 0 0 1264 1293 12 120720185 17 49244315 0 1264 EVALUABLE BAM_REFUTED
659_d13 UBXN6 INTERGENIC chr19 4446294 chr19 4472275 DUP MantaDUP:TANDEM:2:4118:4119:0:0:0 TRUTH 0 0 3257 344 19 4446291 19 4472272 0 344 EVALUABLE BAM_REFUTED
659_dNQ RMI1 MAMDC4 chr9 83992887 chr9 136857505 DEL MantaDEL:24459:0:1:0:0:0 TRUTH 0 0 0 3109 9 86607802 9 139751957 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ KIAA1598 FGFR2 chr10 116958429 chr10 121483343 DEL MantaDEL:26689:0:1:0:0:0 TRUTH 0 0 3 5205 10 118717940 10 123242857 0 3 UNEVALUABLE UNEVALUABLE
659_dNQ DERL3 MYH9 chr22 23835343 chr22 36360230 INV MantaINV:41234:0:1:0:0:0 TRUTH 0 0 3742 20 22 24177530 22 36756275 0 20 EVALUABLE BAM_REFUTED
659_dNQ DERL3 INTERGENIC chr22 23836346 chr22 42646622 INV MantaINV:32587:1:2:0:0:0 TRUTH 0 0 3942 886 22 24178533 22 43042628 0 886 EVALUABLE BAM_REFUTED
659_dNQ PLA2G3 CACNA1I chr22 31136952 chr22 39593118 INV MantaINV:41279:0:1:0:0:0 TRUTH 0 0 947 0 22 31532938 22 39989123 0 0 UNEVALUABLE UNEVALUABLE
659_dNQ PLA2G3 INTERGENIC chr22 31139881 chr22 37802324 INV MantaINV:41281:0:1:0:0:0 TRUTH 0 0 1152 4 22 31535867 22 38198331 0 4 UNEVALUABLE UNEVALUABLE
659_dYT ATG13 TTC28 chr11 46618881 chr22 28163129 BND MantaBND:34445:0:1:0:0:0:1 TRUTH 0 0 3 2083 11 46640431 22 28559117 0 3 UNEVALUABLE UNEVALUABLE
659_dYT DNAH9 NCOR1 chr17 11869182 chr17 16041736 DEL MantaDEL:45524:0:1:0:0:0 TRUTH 0 0 763 10 17 11772499 17 15945050 0 10 UNEVALUABLE UNEVALUABLE
659_dYT KLHL22 AIFM3 chr22 20467480 chr22 20977066 DUP MantaDUP:TANDEM:11341:1:2:0:0:0 TRUTH 0 0 27 1904 22 20821767 22 21331355 0 27 EVALUABLE BAM_REFUTED
659_dYT INTERGENIC SLC35C1 chr11 38475365 chr11 45805573 DUP MantaDUP:TANDEM:4:4713:4714:0:0:0 TRUTH 0 0 0 3728 11 38496915 11 45827124 0 0 UNEVALUABLE UNEVALUABLE
659_dYT AGAP2 INTERGENIC chr12 57734053 chr12 58208737 DUP MantaDUP:TANDEM:37483:0:1:0:0:0 TRUTH 0 0 1476 3 12 58127836 12 58602520 0 3 UNEVALUABLE UNEVALUABLE
659_dYT RAD9A INTERGENIC chr11 67393333 chr11 95265718 INV MantaINV:4:4746:4816:0:0:0 TRUTH 0 0 2203 2 11 67160804 11 94998882 0 2 UNEVALUABLE UNEVALUABLE
659_dYT INTERGENIC C2CD3 chr11 65688576 chr11 74085816 INV MantaINV:34731:0:1:0:0:0 TRUTH 0 0 3 953 11 65456047 11 73796861 0 3 UNEVALUABLE UNEVALUABLE
659_dYT IL17RA CRYBB1 chr22 17109189 chr22 26608849 INV MantaINV:52858:0:1:0:0:0 TRUTH 0 0 3981 3 22 17590079 22 27004813 0 3 UNEVALUABLE UNEVALUABLE
659_dYT INTERGENIC EMILIN2 chr18 2216919 chr18 2913313 DUP MantaDUP:TANDEM:47824:0:1:0:0:0 TRUTH 0 0 0 1132 18 2216919 18 2913311 0 0 UNEVALUABLE UNEVALUABLE
659_dYT SYN3 EFCAB6 chr22 32868972 chr22 43764795 INV MantaINV:53314:0:1:0:0:0 TRUTH 0 0 774 169 22 33264959 22 44160675 0 169 EVALUABLE BAM_REFUTED
659_dYT RNF121 INTERGENIC chr11 71960763 chr19 46192420 BND MantaBND:35084:0:2:0:0:0:0 TRUTH 0 0 800 2 11 71671809 19 46695677 0 2 UNEVALUABLE UNEVALUABLE
659_dYT KCNN3 MEF2D chr1 154849108 chr1 156468870 DUP MantaDUP:TANDEM:4:482:483:0:0:0 TRUTH 0 0 0 2072 1 154821584 1 156438662 0 0 UNEVALUABLE UNEVALUABLE
659_djb ATF1 EWSR1 chr12 50803044 chr22 29290592 BND MantaBND:43230:0:1:1:0:0:1 TRUTH 0 0 10 6610 12 51196827 22 29686581 0 10 UNEVALUABLE UNEVALUABLE
659_djb ATF1 EWSR1 chr12 50803046 chr22 29290593 BND MantaBND:43230:0:1:0:0:0:1 TRUTH 0 0 10 6611 12 51196829 22 29686582 0 10 UNEVALUABLE UNEVALUABLE
659_drZ INTERGENIC USP38 chr1 112789154 chr4 143206082 BND MantaBND:2131:0:1:0:0:0:1 TRUTH 0 0 17 592 1 113331776 4 144127235 0 17 UNEVALUABLE UNEVALUABLE
659_drZ INTERGENIC USP38 chr1 112789283 chr4 143203406 BND MantaBND:2132:0:1:0:0:0:1 TRUTH 0 0 17 516 1 113331905 4 144124559 0 17 UNEVALUABLE UNEVALUABLE
659_drZ SLC19A3 C20orf96 chr2 227710474 chr20 276478 BND MantaBND:7444:0:1:0:0:0:0 TRUTH 0 0 2 2558 2 228575190 20 257119 0 2 UNEVALUABLE UNEVALUABLE
659_drZ EPHB3 INTERGENIC chr3 184575960 chr3 184624389 DUP MantaDUP:TANDEM:9899:0:1:0:2:0 TRUTH 0 0 953 2 3 184293748 3 184342177 0 2 UNEVALUABLE UNEVALUABLE
659_drZ OLIG3 INTERGENIC chr6 137493833 chr6 137495592 DEL MantaDEL:15627:0:1:0:0:0 TRUTH 0 0 2304 1 6 137814970 6 137816729 0 1 UNEVALUABLE UNEVALUABLE
659_drZ SYNE1 PTEN chr6 152397663 chr10 87952136 BND MantaBND:15744:0:1:0:0:0:0 TRUTH 0 0 15 1484 6 152718798 10 89711893 0 15 UNEVALUABLE UNEVALUABLE
659_drZ INTERGENIC CCDC136 chr7 94032942 chr7 128815811 INV MantaINV:2:2217:2219:0:0:0 TRUTH 0 0 0 1004 7 93662254 7 128455865 0 0 UNEVALUABLE UNEVALUABLE
659_drZ UBN2 DENND2A chr7 139262473 chr7 140601608 INV MantaINV:17631:0:1:0:0:0 TRUTH 0 0 27 2807 7 138947219 7 140301408 0 27 EVALUABLE BAM_REFUTED
659_drZ MMP10 MMP1 chr11 102775101 chr11 102797162 DUP MantaDUP:TANDEM:24789:0:1:0:0:0 TRUTH 0 0 432 2089 11 102645832 11 102667893 0 432 EVALUABLE BAM_REFUTED
659_drZ INTERGENIC A2M chr12 7681816 chr12 9074639 INV MantaINV:4991:1:2:0:0:0 TRUTH 0 0 7 1075 12 7834412 12 9227235 0 7 UNEVALUABLE UNEVALUABLE
659_drZ BRCA2 PDS5B chr13 32376521 chr13 32768279 DUP MantaDUP:TANDEM:27140:0:1:0:5:0 TRUTH 0 0 4702 1 13 32950658 13 33342417 0 1 UNEVALUABLE UNEVALUABLE
659_drZ ZNF280D ZNF710 chr15 56700519 chr15 90038030 DUP MantaDUP:TANDEM:29511:0:1:0:0:0 TRUTH 0 0 1408 0 15 56992717 15 90581262 0 0 UNEVALUABLE UNEVALUABLE
659_drZ INTERGENIC TBC1D10A chr20 45215253 chr22 30326774 BND MantaBND:37019:0:1:0:0:0:0 TRUTH 0 0 16 786 20 43843894 22 30722763 0 16 UNEVALUABLE UNEVALUABLE
659_ebq FLI1 EWSR1 chr11 128801809 chr22 29291632 BND MantaBND:27268:0:1:2:0:0:1 TRUTH 0 0 0 7120 11 128671704 22 29687621 0 0 UNEVALUABLE UNEVALUABLE
659_ebq FLI1 EWSR1 chr11 128801781 chr22 29291667 BND MantaBND:27268:0:1:1:0:0:1 TRUTH 0 0 0 7175 11 128671676 22 29687656 0 0 UNEVALUABLE UNEVALUABLE
659_eci CREB1 EWSR1 chr2 207561056 chr22 29296814 BND MantaBND:5:9085:9137:0:0:0:1 TRUTH 0 0 265 8052 2 208425780 22 29692804 0 265 EVALUABLE BAM_REFUTED
659_eci CREB1 EWSR1 chr2 207561138 chr22 29288629 BND MantaBND:5:9120:9137:0:0:0:0 TRUTH 0 0 255 8366 2 208425862 22 29684618 0 255 EVALUABLE BAM_REFUTED
659_ef5 PAX3 FOXO1 chr2 222208359 chr13 40587455 BND MantaBND:5789:0:1:0:0:0:0 TRUTH 0 0 4340 1 2 223073078 13 41161592 0 1 UNEVALUABLE UNEVALUABLE
659_ef5 PAX3 FOXO1 chr2 222208421 chr13 40587438 BND MantaBND:5789:0:1:2:0:0:0 TRUTH 0 0 4490 1 2 223073140 13 41161575 0 1 UNEVALUABLE UNEVALUABLE
659_ef5 XRCC6BP1 TMEM132D chr12 57941785 chr12 129486483 DEL MantaDEL:21944:0:1:0:0:0 TRUTH 0 0 857 0 12 58335568 12 129971028 0 0 UNEVALUABLE UNEVALUABLE
659_ef5 C13orf35 GRTP1 chr13 112662250 chr13 113325815 DEL MantaDEL:23698:0:1:0:1:0 TRUTH 0 0 9 1942 13 113316564 13 113980130 0 9 UNEVALUABLE UNEVALUABLE
659_eqd PAK2 MET chr3 196795705 chr7 116772830 BND MantaBND:23464:0:1:0:0:0:1 TRUTH 0 0 0 6137 3 196522576 7 116412884 0 0 UNEVALUABLE UNEVALUABLE
659_eqd INTERGENIC ZNF532 chr18 58784812 chr18 58920256 DUP MantaDUP:TANDEM:62427:0:1:0:0:0 TRUTH 0 0 1 2995 18 56452044 18 56587488 0 1 UNEVALUABLE UNEVALUABLE
659_exw FLI1 EWSR1 chr11 128788483 chr22 29287527 BND MantaBND:11:5249:5264:0:0:0:0 TRUTH 0 0 18 4895 11 128658378 22 29683516 0 18 UNEVALUABLE UNEVALUABLE
659_exw GNG7 EWSR1 chr19 2680587 chr22 29287245 BND MantaBND:61110:0:1:0:0:0:0 TRUTH 0 0 11 4000 19 2680585 22 29683234 0 11 UNEVALUABLE UNEVALUABLE
659_n7 L3MBTL3 FGFR2 chr6 130088209 chr10 121480729 BND MantaBND:0:2537:2538:0:0:0:0 TRUTH 0 0 0 6807 6 130409354 10 123240243 0 0 UNEVALUABLE UNEVALUABLE
659_n7 KLHL9 INTERGENIC chr9 21333066 chr9 22253302 DEL MantaDEL:33453:0:1:0:0:0 TRUTH 0 0 1416 6 9 21333065 9 22253301 0 6 UNEVALUABLE UNEVALUABLE
659_n7 INTERGENIC DCDC1 chr11 30242420 chr11 31265595 DUP MantaDUP:TANDEM:37966:0:1:0:0:0 TRUTH 0 0 0 212 11 30263967 11 31287142 0 0 UNEVALUABLE UNEVALUABLE
659_ri TACC3 FGFR3 chr4 1737479 chr4 1807378 DUP MantaDUP:TANDEM:22:1532:1535:0:0:0 TRUTH 0 0 593 10350 4 1739206 4 1809105 0 593 EVALUABLE BAM_REFUTED
659_uv INTERGENIC RAI14 chr1 119264107 chr5 34824347 BND MantaBND:2489:0:1:0:0:0:1 TRUTH 0 0 1 1776 1 119806730 5 34824452 0 1 UNEVALUABLE UNEVALUABLE
659_uv S100A10 TPP2 chr1 151983201 chr13 102600206 BND MantaBND:2677:0:1:0:0:0:0 TRUTH 0 0 462 0 1 151955677 13 103252556 0 0 UNEVALUABLE UNEVALUABLE
659_uv INTERGENIC DBI chr2 119367095 chr2 119368164 DEL MantaDEL:6490:0:1:0:0:0 TRUTH 321 0 2511 1646 2 120124671 2 120125740 321 1646 EVALUABLE BAM_CONFIRMED
659_uv INTERGENIC IWS1 chr2 127435246 chr2 127505626 DEL MantaDEL:6583:0:1:0:0:0 TRUTH 0 0 0 1600 2 128192822 2 128263202 0 0 UNEVALUABLE UNEVALUABLE
659_uv STAB1 NT5DC2 chr3 52521256 chr3 52533734 INV MantaINV:2:3031:3127:0:0:0 TRUTH 0 0 2954 781 3 52555272 3 52567750 0 781 EVALUABLE BAM_REFUTED
659_uv ASB14 PIBF1 chr3 57276677 chr13 72910000 BND MantaBND:9771:0:1:0:0:0:1 TRUTH 0 0 656 6 3 57310705 13 73484138 0 6 UNEVALUABLE UNEVALUABLE
659_uv NCK1 RAD51AP1 chr3 136900055 chr12 4538955 BND MantaBND:2:9830:9834:0:0:0:1 TRUTH 0 0 197 466 3 136618897 12 4648121 0 197 EVALUABLE BAM_REFUTED
659_uv TM4SF1 DNM2 chr3 149371724 chr19 10765240 BND MantaBND:10762:1:2:1:0:0:1 TRUTH 0 0 668 15 3 149089511 19 10875916 0 15 UNEVALUABLE UNEVALUABLE
659_uv INTERGENIC PROSC chr4 39528520 chr8 37762647 BND MantaBND:11952:0:1:0:0:0:1 TRUTH 0 0 14 1317 4 39530140 8 37620165 0 14 UNEVALUABLE UNEVALUABLE
659_uv INTERGENIC UBE2QL1 chr5 3778523 chr5 6448905 DEL MantaDEL:13593:0:1:0:0:0 TRUTH 0 0 0 2055 5 3778637 5 6449018 0 0 UNEVALUABLE UNEVALUABLE
659_uv INTERGENIC SFR1 chr5 29268007 chr10 104123927 BND MantaBND:2:8330:8347:0:0:0:0 TRUTH 0 0 0 803 5 29268114 10 105883685 0 0 UNEVALUABLE UNEVALUABLE
659_uv AFF4 AKIP1 chr5 132896903 chr11 8916925 BND MantaBND:14931:0:2:0:0:0:1 TRUTH 0 0 3082 321 5 132232595 11 8938472 0 321 EVALUABLE BAM_REFUTED
659_uv GEMIN5 INTERGENIC chr5 154898539 chr6 97868733 BND MantaBND:15221:0:1:0:0:0:1 TRUTH 0 0 535 2 5 154278099 6 98316609 0 2 UNEVALUABLE UNEVALUABLE
659_uv DOCK4 MYO1D chr7 111868151 chr17 32674968 BND MantaBND:19743:0:1:0:0:0:1 TRUTH 0 0 605 0 7 111508207 17 31001986 0 0 UNEVALUABLE UNEVALUABLE
659_uv AGBL3 KRT8 chr7 135092904 chr12 52905055 BND MantaBND:19997:0:1:0:0:0:0 TRUTH 0 0 0 1455 7 134777656 12 53298839 0 0 UNEVALUABLE UNEVALUABLE
659_uv ASPH KRT8 chr8 61579476 chr12 52897567 BND MantaBND:14835:1:2:0:0:0:1 TRUTH 0 0 1734 764 8 62492035 12 53291351 0 764 EVALUABLE BAM_REFUTED
659_uv RIMS2 LRP12 chr8 103997382 chr8 104497102 INV MantaINV:21456:2:3:0:0:0 TRUTH 0 0 1 1612 8 105009610 8 105509330 0 1 UNEVALUABLE UNEVALUABLE
659_uv ANKRD18A LDHA chr9 38571599 chr11 18407732 BND MantaBND:22392:0:1:0:0:0:1 TRUTH 0 0 2097 419 9 38571596 11 18429279 0 419 EVALUABLE BAM_REFUTED
659_uv ANKRD18A LDHA chr9 38571605 chr11 18407775 BND MantaBND:22392:0:1:1:0:0:0 TRUTH 0 0 2092 370 9 38571602 11 18429322 0 370 EVALUABLE BAM_REFUTED
659_uv ANXA11 FGFR2 chr10 80157763 chr10 121566031 INV MantaINV:20529:1:3:0:0:0 TRUTH 0 0 2141 1826 10 81917519 10 123325545 0 1826 EVALUABLE BAM_REFUTED
659_uv OPALIN TACC2 chr10 96349821 chr10 122171381 DUP MantaDUP:TANDEM:2:8276:8277:0:0:0 TRUTH 0 0 696 0 10 98109578 10 123930896 0 0 UNEVALUABLE UNEVALUABLE
659_uv INTERGENIC GAPDH chr10 120344224 chr12 6537816 BND MantaBND:25027:0:1:0:0:0:1 TRUTH 0 0 1 2014 10 122103736 12 6646982 0 1 UNEVALUABLE UNEVALUABLE
659_uv RP11-399J13.3 SAC3D1 chr11 65031702 chr11 65041901 DEL MantaDEL:26495:0:1:0:1:0 TRUTH 0 0 241 2349 11 64799174 11 64809373 0 241 EVALUABLE BAM_REFUTED
659_uv INTERGENIC PDIA3 chr11 89139963 chr15 43771104 BND MantaBND:2638:1:2:0:0:0:0 TRUTH 0 0 4 430 11 88873131 15 44063302 0 4 UNEVALUABLE UNEVALUABLE
659_uv INTERGENIC SLC1A5 chr11 98457898 chr19 46787668 BND MantaBND:2:14533:14676:0:0:0:0 TRUTH 0 0 0 2147 11 98328627 19 47290925 0 0 UNEVALUABLE UNEVALUABLE
659_uv SOS2 INTERGENIC chr14 50155732 chr14 50723533 DUP MantaDUP:TANDEM:31702:1:4:0:0:0 TRUTH 0 0 0 733 14 50622450 14 51190251 0 0 UNEVALUABLE UNEVALUABLE
1173_GXL TBL1XR1 INTERGENIC chr3 177047961 chr3 179557679 DUP MantaDUP:TANDEM:10355:0:2:0:0:0 TRUTH 0 0 6815 15 3 176765749 3 179275467 0 15 UNEVALUABLE UNEVALUABLE
1173_GXL KRT78 SLC2A4 chr12 52839351 chr17 7282755 BND MantaBND:26547:0:1:0:0:0:1 TRUTH 0 0 1731 158 12 53233135 17 7186074 0 158 EVALUABLE BAM_REFUTED
1173_GXL INTERGENIC ARHGEF15 chr12 52960463 chr17 8312115 BND MantaBND:2:3369:3370:0:0:0:0 TRUTH 0 0 13 2709 12 53354247 17 8215433 0 13 UNEVALUABLE UNEVALUABLE
1173_GXL SLC2A4 ARHGEF15 chr17 7284577 chr17 8313301 DEL MantaDEL:17696:1:2:0:0:0 TRUTH 0 0 2141 2319 17 7187896 17 8216619 0 2141 EVALUABLE BAM_REFUTED
1173_GXL ERG TMPRSS2 chr21 38506454 chr21 41506382 DEL MantaDEL:37298:0:1:0:0:0 TRUTH 0 0 0 10576 21 39878378 21 42878309 0 0 UNEVALUABLE UNEVALUABLE
1173_JXL ARFGAP3 PACSIN2 chr22 42806824 chr22 42882297 DUP MantaDUP:TANDEM:27254:0:1:0:0:0 TRUTH 0 0 752 612 22 43202830 22 43278303 0 612 EVALUABLE BAM_REFUTED
1173_JLC DFFB RNF220 chr1 3858791 chr1 44456637 INV MantaINV:119:0:1:0:0:0 TRUTH 0 0 807 1 1 3775355 1 44922309 0 1 UNEVALUABLE UNEVALUABLE
1173_JLC PKD1 INTERGENIC chr16 2097414 chr16 2968676 DUP MantaDUP:TANDEM:45636:0:1:0:0:0 TRUTH 0 0 2376 686 16 2147415 16 3018677 0 686 EVALUABLE BAM_REFUTED
1173_NMN INTERGENIC FAM212B chr1 81336065 chr1 111727294 DUP MantaDUP:TANDEM:1345:0:1:0:0:0 TRUTH 0 0 0 3306 1 81801750 1 112269916 0 0 UNEVALUABLE UNEVALUABLE
1173_NMN INTERGENIC FAM212B chr1 81336392 chr1 111727310 DEL MantaDEL:1345:0:1:1:0:0 TRUTH 0 0 0 3317 1 81802077 1 112269932 0 0 UNEVALUABLE UNEVALUABLE
1173_LAF BIRC6 INTERGENIC chr2 32357432 chr2 33683982 DUP MantaDUP:TANDEM:7729:0:1:0:0:0 TRUTH 0 0 1414 1 2 32582500 2 33909049 0 1 UNEVALUABLE UNEVALUABLE
1173_LAF CBY3 TRIM41 chr5 179679025 chr5 181225581 DUP MantaDUP:TANDEM:21987:0:1:0:0:0 TRUTH 0 0 1983 8 5 179106026 5 180652581 0 8 UNEVALUABLE UNEVALUABLE
1173_LAF PPFIBP1 CIC chr12 27527239 chr19 42295325 BND MantaBND:11:10769:10927:0:0:0:0 TRUTH 0 0 7 10934 12 27680172 19 42799477 0 7 UNEVALUABLE UNEVALUABLE
1173_LAF PTBP1 GAMT chr19 801498 chr19 1401375 DUP MantaDUP:TANDEM:52947:0:1:0:0:0 TRUTH 0 0 4 859 19 801498 19 1401374 0 4 UNEVALUABLE UNEVALUABLE
1173_Q7O CYP2A6 CYP2A7 chr19 40848631 chr19 40880570 DUP MantaDUP:TANDEM:56512:1:3:0:0:0 TRUTH 5 0 3707 2769 19 41354536 19 41386475 5 2769 EVALUABLE BAM_CONFIRMED
1173_LV7 PER3 INTERGENIC chr1 7827497 chr20 35099559 BND MantaBND:201:0:1:0:0:0:0 TRUTH 0 0 2007 9 1 7887557 20 33687362 0 9 UNEVALUABLE UNEVALUABLE
1173_QJL INTERGENIC ATR chr3 104243432 chr3 142470184 DUP MantaDUP:TANDEM:10585:0:1:0:0:0 TRUTH 0 0 2 785 3 103962276 3 142189026 0 2 UNEVALUABLE UNEVALUABLE
1173_QJL ARRDC3 INTERGENIC chr5 91382830 chr5 93140142 DUP MantaDUP:TANDEM:15528:0:1:0:0:0 TRUTH 0 0 1111 0 5 90678647 5 92475848 0 0 UNEVALUABLE UNEVALUABLE
1173_QJL INTERGENIC SQSTM1 chr5 179820739 chr5 179821075 DEL MantaDEL:16788:0:0:0:0:0 TRUTH 505 0 990 1015 5 179247739 5 179248075 505 990 EVALUABLE BAM_CONFIRMED
1173_QJL ZC3H12C ARHGAP20 chr11 110164027 chr11 110578270 DUP MantaDUP:TANDEM:27452:1:2:0:0:0 TRUTH 0 0 848 3111 11 110034752 11 110448994 0 848 EVALUABLE BAM_REFUTED
1173_QJL C17orf89 HGS chr17 81240685 chr17 81696860 DUP MantaDUP:TANDEM:14339:1:3:0:0:0 TRUTH 0 0 666 3638 17 79214485 17 79663890 0 666 EVALUABLE BAM_REFUTED
1173_QJL ERG TMPRSS2 chr21 38502980 chr21 41496130 DEL MantaDEL:40160:0:1:0:0:0 TRUTH 0 0 6 8146 21 39874904 21 42868057 0 6 UNEVALUABLE UNEVALUABLE
659_1q TACC3 FGFR3 chr4 1741170 chr4 1807484 DUP MantaDUP:TANDEM:2:2170:2171:0:8:0 TRUTH 0 0 544 13568 4 1742897 4 1809211 0 544 EVALUABLE BAM_REFUTED
659_Dl PRSS16 TULP4 chr6 27247930 chr6 158495846 INV MantaINV:10180:1:2:0:0:0 TRUTH 0 0 1482 0 6 27215709 6 158916878 0 0 UNEVALUABLE UNEVALUABLE
659_Dl PRSS16 TIAM2 chr6 27250682 chr6 155207081 INV MantaINV:30219:0:2:0:0:0 TRUTH 0 0 1633 2 6 27218461 6 155528215 0 2 UNEVALUABLE UNEVALUABLE
659_Dl GAB4 INTERGENIC chr22 17008112 chr22 26633606 DEL MantaDEL:34288:1:2:0:0:0 TRUTH 0 0 821 8 22 17489002 22 27029570 0 8 UNEVALUABLE UNEVALUABLE
659_Dl HPS4 SLC5A4 chr22 26471648 chr22 32231075 DUP MantaDUP:TANDEM:71092:0:1:0:0:0 TRUTH 0 0 10 302 22 26867614 22 32627062 0 10 UNEVALUABLE UNEVALUABLE
659_Dl FOXRED2 INTERGENIC chr22 36506100 chr22 47528827 INV MantaINV:71478:0:1:0:0:0 TRUTH 0 0 1815 22 22 36902147 22 47924576 0 22 EVALUABLE BAM_REFUTED
659_Em ERLIN2 WHSC1L1 chr8 37744371 chr8 38333517 DUP MantaDUP:TANDEM:22550:0:1:0:0:0 TRUTH 0 0 683 4 8 37601889 8 38191035 0 4 UNEVALUABLE UNEVALUABLE
659_Em C11orf80 KDM2A chr11 66816156 chr11 67173057 DUP MantaDUP:TANDEM:29611:0:1:0:0:0 TRUTH 0 0 747 22 11 66583627 11 66940528 0 22 EVALUABLE BAM_REFUTED
659_Em INTERGENIC SH3PXD2A chr1 88108591 chr10 103613046 BND MantaBND:2404:0:1:0:0:0:1 TRUTH 0 0 0 889 1 88574274 10 105372803 0 0 UNEVALUABLE UNEVALUABLE
659_Em PPAPDC1A TACC2 chr10 120533433 chr10 122086123 DUP MantaDUP:TANDEM:28066:0:1:0:0:0 TRUTH 0 0 0 3274 10 122292945 10 123845638 0 0 UNEVALUABLE UNEVALUABLE
659_Em SAMD3 PEX7 chr6 130144611 chr6 136903223 DUP MantaDUP:TANDEM:18522:0:1:0:0:0 TRUTH 0 0 803 0 6 130465756 6 137224361 0 0 UNEVALUABLE UNEVALUABLE
659_Em RNF220 PLK3 chr1 44640942 chr1 44803326 DEL MantaDEL:1473:0:1:0:0:0 TRUTH 0 0 1 1792 1 45106614 1 45268998 0 1 UNEVALUABLE UNEVALUABLE
659_Em ARID1A FRMD6 chr1 26773661 chr14 51699557 BND MantaBND:892:2:3:0:0:0:1 TRUTH 0 0 5384 0 1 27100152 14 52166275 0 0 UNEVALUABLE UNEVALUABLE
659_Kh HDLBP PPA2 chr2 241233845 chr4 105465680 BND MantaBND:5316:0:2:0:0:0:0 TRUTH 0 0 781 0 2 242173260 4 106386837 0 0 UNEVALUABLE UNEVALUABLE
659_Kh HDLBP INTERGENIC chr2 241233840 chr17 38675408 BND MantaBND:5316:0:1:0:0:0:0 TRUTH 0 0 781 0 2 242173255 17 36831661 0 0 UNEVALUABLE UNEVALUABLE
659_Kh TMPO ANO4 chr12 98534549 chr12 101075247 DUP MantaDUP:TANDEM:19821:0:1:0:0:0 TRUTH 0 0 2584 1 12 98928327 12 101469025 0 1 UNEVALUABLE UNEVALUABLE
659_Kh INTERGENIC PBOV1 chr6 74325388 chr6 138218205 DUP MantaDUP:TANDEM:10944:0:1:0:0:0 TRUTH 0 0 7 1418 6 75035104 6 138539342 0 7 UNEVALUABLE UNEVALUABLE
659_Kh INTERGENIC TMEM116 chr3 36701682 chr12 111991849 BND MantaBND:5764:0:1:0:0:0:1 TRUTH 0 0 2 762 3 36743173 12 112429653 0 2 UNEVALUABLE UNEVALUABLE
659_Kh PARP8 C5orf20 chr5 50822335 chr5 135445078 INV MantaINV:9073:0:1:0:0:0 TRUTH 0 0 276 0 5 50118169 5 134780768 0 0 UNEVALUABLE UNEVALUABLE
659_Kh ERG TMPRSS2 chr21 38492234 chr21 41489349 INV MantaINV:1:6182:6183:0:0:0 TRUTH 0 0 0 8541 21 39864158 21 42861276 0 0 UNEVALUABLE UNEVALUABLE
659_Kh INTERGENIC LCN9 chr9 135663145 chr9 135665947 DEL MantaDEL:15833:0:1:0:0:0 TRUTH 0 0 366 1991 9 138554991 9 138557793 0 366 EVALUABLE BAM_REFUTED
659_b2o FGFR2 NOL4 chr10 121483103 chr18 33957820 BND MantaBND:5:12489:12490:0:1:0:0 TRUTH 0 0 6022 951 10 123242617 18 31537784 0 951 EVALUABLE BAM_REFUTED
659_b4v TAX1BP1 BRAF chr7 27792639 chr7 140787958 INV MantaINV:26013:1:4:1:0:0 TRUTH 0 0 868 7225 7 27832258 7 140487758 0 868 EVALUABLE BAM_REFUTED
659_b4v TAX1BP1 BRAF chr7 27792545 chr7 140787899 INV MantaINV:26013:1:4:0:0:0 TRUTH 0 0 942 7336 7 27832164 7 140487699 0 942 EVALUABLE BAM_REFUTED
659_b6q ZNF567 INTERGENIC chr19 36719686 chr19 40019083 DUP MantaDUP:TANDEM:27452:0:1:0:1:0 TRUTH 0 0 3025 0 19 37210588 19 40524990 0 0 UNEVALUABLE UNEVALUABLE
659_b6q TFAP2E INTERGENIC chr1 35587290 chr1 35735028 DEL MantaDEL:739:0:1:0:0:0 TRUTH 0 0 8 1856 1 36052891 1 36200629 0 8 UNEVALUABLE UNEVALUABLE
659_b6q MYB INTERGENIC chr6 135204748 chr6 135255791 DUP MantaDUP:TANDEM:11100:0:1:0:0:0 TRUTH 0 0 6079 14 6 135525886 6 135576929 0 14 UNEVALUABLE UNEVALUABLE
659_b6q TBK1 TMCC3 chr12 64490064 chr12 94576747 DUP MantaDUP:TANDEM:19783:0:1:0:0:0 TRUTH 0 0 388 11 12 64883844 12 94970523 0 11 UNEVALUABLE UNEVALUABLE
659_b6q INTERGENIC NADSYN1 chr3 145281301 chr11 71473602 BND MantaBND:6565:0:1:0:0:0:1 TRUTH 0 0 0 920 3 144999088 11 71184648 0 0 UNEVALUABLE UNEVALUABLE
659_b6q LRRK2 ACTN4 chr12 40234274 chr19 38717266 BND MantaBND:19336:0:1:0:0:0:1 TRUTH 0 0 0 1739 12 40628076 19 39207906 0 0 UNEVALUABLE UNEVALUABLE
659_b6q INTERGENIC MEI4 chr3 124680390 chr6 77690743 BND MantaBND:6314:0:1:0:0:0:1 TRUTH 0 0 5 698 3 124399237 6 78400460 0 5 UNEVALUABLE UNEVALUABLE
659_b6q CSMD1 NFATC2 chr8 3302651 chr20 51435229 BND MantaBND:13423:0:1:0:0:0:0 TRUTH 0 0 3 1357 8 3160173 20 50051766 0 3 UNEVALUABLE UNEVALUABLE
659_b6q FGFR1 INTERGENIC chr8 38414601 chr20 59373830 BND MantaBND:13931:0:1:0:2:0:1 TRUTH 0 0 7477 0 8 38272119 20 57948885 0 0 UNEVALUABLE UNEVALUABLE
659_b6q INTERGENIC NAALAD2 chr6 79242987 chr11 90147452 BND MantaBND:10728:0:1:0:0:0:1 TRUTH 0 0 6 669 6 79952704 11 89880620 0 6 UNEVALUABLE UNEVALUABLE
659_bDa WNK2 INTERGENIC chr9 93259376 chr17 37746502 BND MantaBND:17309:1:2:0:0:0:0 TRUTH 0 0 3394 1 9 96021658 17 36106493 0 1 UNEVALUABLE UNEVALUABLE
659_bDa MVB12B CERCAM chr9 126477010 chr9 128434122 DUP MantaDUP:TANDEM:31802:0:1:0:0:0 TRUTH 0 0 15 1769 9 129239289 9 131196401 0 15 UNEVALUABLE UNEVALUABLE
659_bDa NSMF INTERGENIC chr9 137457499 chr17 55903619 BND MantaBND:32149:0:1:0:0:0:1 TRUTH 0 0 2485 0 9 140351951 17 53980980 0 0 UNEVALUABLE UNEVALUABLE
659_bDa INTERGENIC LIMA1 chr12 47733404 chr12 50222048 DEL MantaDEL:1725:1:3:0:0:0 TRUTH 0 0 0 1638 12 48127187 12 50615831 0 0 UNEVALUABLE UNEVALUABLE
659_bDa SLC48A1 LIMA1 chr12 47778507 chr12 50222073 DEL MantaDEL:1725:2:3:0:0:0 TRUTH 0 0 321 1708 12 48172290 12 50615856 0 321 EVALUABLE BAM_REFUTED
659_bDa ZNF641 C1QL4 chr12 48340304 chr12 49336021 INV MantaINV:37894:0:1:0:0:0 TRUTH 0 0 3099 2678 12 48734087 12 49729804 0 2678 EVALUABLE BAM_REFUTED
659_bDa DHH INTERGENIC chr12 49091298 chr14 41570456 BND MantaBND:38038:0:1:0:0:0:1 TRUTH 0 0 1677 0 12 49485081 14 42039659 0 0 UNEVALUABLE UNEVALUABLE
659_bDa XPOT GNS chr12 64439327 chr12 64744823 INV MantaINV:38763:0:1:0:0:0 TRUTH 0 0 355 198 12 64833107 12 65138603 0 198 EVALUABLE BAM_REFUTED
659_bDa INTERGENIC NOVA1 chr14 25638714 chr14 26448892 DEL MantaDEL:41974:0:1:0:0:0 TRUTH 0 0 0 2093 14 26107920 14 26918098 0 0 UNEVALUABLE UNEVALUABLE
659_bDa BLMH MAPT chr17 30274146 chr17 45958911 DEL MantaDEL:47822:0:1:0:0:0 TRUTH 0 0 873 0 17 28601164 17 44036277 0 0 UNEVALUABLE UNEVALUABLE
659_bDa RAD51L3-RFFL INTERGENIC chr17 35119900 chr17 62895456 DEL MantaDEL:17703:1:3:0:0:0 TRUTH 0 0 3522 0 17 33446919 17 60972817 0 0 UNEVALUABLE UNEVALUABLE
659_bDa SCRN2 COL1A1 chr17 47840120 chr17 50188387 DUP MantaDUP:TANDEM:7:8678:8681:0:1:0 TRUTH 0 0 1522 11413 17 45917486 17 48265748 0 1522 EVALUABLE BAM_REFUTED
659_bDa COL1A1 ANKFN1 chr17 50188185 chr17 56274896 INV MantaINV:7:8678:8679:0:0:0 TRUTH 0 0 11716 6 17 48265546 17 54352257 0 6 UNEVALUABLE UNEVALUABLE
659_bDa INTERGENIC CLTC chr17 52526357 chr17 59660546 DUP MantaDUP:TANDEM:48592:0:1:0:0:0 TRUTH 0 0 24 698 17 50603717 17 57737907 0 24 EVALUABLE BAM_REFUTED
659_bDa INTERGENIC LGALS3BP chr17 55500677 chr17 78972071 DEL MantaDEL:48734:0:1:0:0:0 TRUTH 0 0 1 3853 17 53578038 17 76968153 0 1 UNEVALUABLE UNEVALUABLE
659_bDa ACE INTERGENIC chr17 63497262 chr17 74721211 DUP MantaDUP:TANDEM:49172:0:1:0:0:0 TRUTH 0 0 2227 4 17 61574623 17 72717350 0 4 UNEVALUABLE UNEVALUABLE
659_bNS ALK EML4 chr2 29224621 chr2 42264829 INV MantaINV:5692:0:1:0:0:0 TRUTH 0 0 9308 450 2 29447487 2 42491969 0 450 EVALUABLE BAM_REFUTED
659_bQZ BRAF AGAP3 chr7 140790196 chr7 151132851 INV MantaINV:43668:0:1:0:0:0 TRUTH 0 0 6837 0 7 140489996 7 150829938 0 0 UNEVALUABLE UNEVALUABLE
659_bTq CAPN15 INTERGENIC chr16 547646 chr16 10315254 DEL MantaDEL:33897:0:1:0:0:0 TRUTH 0 0 3750 18 16 597646 16 10409111 0 18 UNEVALUABLE UNEVALUABLE
659_bmI IGFBP7 INTERGENIC chr4 57110010 chr17 55475849 BND MantaBND:14486:0:1:0:0:0:1 TRUTH 0 0 2356 2 4 57976176 17 53553210 0 2 UNEVALUABLE UNEVALUABLE
659_bmI BNC2 PLIN2 chr9 16751502 chr9 19121087 INV MantaINV:25980:0:1:0:0:0 TRUTH 0 0 4 759 9 16751500 9 19121085 0 4 UNEVALUABLE UNEVALUABLE
659_bmI SH3GL2 MOB3B chr9 17581473 chr9 27455559 DUP MantaDUP:TANDEM:2:3400:3577:0:0:0 TRUTH 0 0 2 2214 9 17581471 9 27455557 0 2 UNEVALUABLE UNEVALUABLE
659_bmI SH3GL2 INTERGENIC chr9 17653861 chr9 24734425 DUP MantaDUP:TANDEM:25974:0:1:0:0:0 TRUTH 0 0 261 6 9 17653859 9 24734423 0 6 UNEVALUABLE UNEVALUABLE
659_bmI PLIN2 INTERGENIC chr9 19119725 chr9 27070897 INV MantaINV:26061:0:1:0:0:0 TRUTH 0 0 402 4 9 19119723 9 27070895 0 4 UNEVALUABLE UNEVALUABLE
659_bmI PLIN2 INTERGENIC chr9 19119742 chr9 26409715 INV MantaINV:26061:0:2:0:0:0 TRUTH 0 0 402 3 9 19119740 9 26409713 0 3 UNEVALUABLE UNEVALUABLE
659_bmI RHNO1 INTERGENIC chr12 2888115 chr12 88691552 DEL MantaDEL:31940:0:1:0:0:0 TRUTH 0 0 1668 6 12 2997281 12 89085329 0 6 UNEVALUABLE UNEVALUABLE
659_bmI YAF2 NUP107 chr12 42200089 chr12 68732662 INV MantaINV:32512:0:1:0:0:0 TRUTH 0 0 6 335 12 42593891 12 69126442 0 6 UNEVALUABLE UNEVALUABLE
659_bmI NCKAP5L INTERGENIC chr12 49804037 chr12 114710660 INV MantaINV:32677:0:1:0:0:0 TRUTH 0 0 1209 6 12 50197820 12 115148465 0 6 UNEVALUABLE UNEVALUABLE
659_bmI SLC11A2 THAP2 chr12 50987441 chr12 71675335 DEL MantaDEL:32862:0:1:0:0:0 TRUTH 0 0 1861 0 12 51381224 12 72069115 0 0 UNEVALUABLE UNEVALUABLE
659_bmI LRP1 INTERGENIC chr12 57199263 chr12 65536316 DEL MantaDEL:33116:0:1:0:0:0 TRUTH 0 0 992 6 12 57593046 12 65930096 0 6 UNEVALUABLE UNEVALUABLE
659_bmI INTERGENIC TMEM132C chr12 59456819 chr12 128616323 INV MantaINV:33178:0:1:0:0:0 TRUTH 0 0 19 917 12 59850600 12 129100868 0 19 UNEVALUABLE UNEVALUABLE
659_bmI INTERGENIC DEPDC4 chr12 97895977 chr12 100262376 DEL MantaDEL:33602:0:1:0:0:0 TRUTH 0 0 7 575 12 98289755 12 100656154 0 7 UNEVALUABLE UNEVALUABLE
659_bmI SETD1B RP11-512M8.5 chr12 121817083 chr12 122249938 INV MantaINV:33974:0:1:0:0:0 TRUTH 0 0 2841 671 12 122254989 12 122734485 0 671 EVALUABLE BAM_REFUTED
659_bmI NPAS3 SERPINA12 chr14 33360663 chr14 94497871 DEL MantaDEL:35707:0:1:0:0:0 TRUTH 0 0 2 1947 14 33829869 14 94964208 0 2 UNEVALUABLE UNEVALUABLE
659_bmI INTERGENIC DICER1 chr14 35966055 chr14 95108066 INV MantaINV:35760:0:1:0:0:0 TRUTH 0 0 4 4474 14 36435261 14 95574403 0 4 UNEVALUABLE UNEVALUABLE
659_bmI INTERGENIC BZRAP1 chr17 40434273 chr17 58311907 DEL MantaDEL:2:3919:6554:0:0:0 TRUTH 0 0 5 4113 17 38590525 17 56389268 0 5 UNEVALUABLE UNEVALUABLE
659_bmI INTERGENIC RALBP1 chr18 2646227 chr18 9535718 INV MantaINV:42275:0:1:0:0:0 TRUTH 0 0 8 1249 18 2646226 18 9535716 0 8 UNEVALUABLE UNEVALUABLE
659_btT HLA-A INTERGENIC chr6 29944945 chr20 53654763 BND MantaBND:15410:1:3:0:0:0:0 TRUTH 0 0 9672 18 6 29912722 20 52271302 0 18 UNEVALUABLE UNEVALUABLE
659_btT INPP5K SMYD4 chr17 1503574 chr17 1800064 DUP MantaDUP:TANDEM:34342:0:1:0:0:0 TRUTH 0 0 20 3375 17 1406868 17 1703358 0 20 EVALUABLE BAM_REFUTED
659_btT ZBTB12 INTERGENIC chr6 31900354 chr20 43790482 BND MantaBND:15494:0:2:0:0:0:0 TRUTH 0 0 4845 1 6 31868131 20 42419122 0 1 UNEVALUABLE UNEVALUABLE
659_btT ZBTB12 L3MBTL1 chr6 31900360 chr20 43520570 BND MantaBND:15494:0:1:0:0:0:1 TRUTH 0 0 4864 0 6 31868137 20 42149210 0 0 UNEVALUABLE UNEVALUABLE
659_btT NCOR1 PIGL chr17 16079979 chr17 16305998 DUP MantaDUP:TANDEM:34791:0:1:0:0:0 TRUTH 0 0 1016 1 17 15983293 17 16209312 0 1 UNEVALUABLE UNEVALUABLE
659_btT TBX22 INTERGENIC chrX 80022392 chrX 81710354 DUP MantaDUP:TANDEM:41512:0:1:0:1:0 TRUTH 0 0 438 1 X 79277891 X 80965853 0 1 UNEVALUABLE UNEVALUABLE
659_btT TTLL3 PRRT3 chr3 9832870 chr3 9947851 DUP MantaDUP:TANDEM:8125:0:1:0:0:0 TRUTH 0 0 983 3101 3 9874554 3 9989535 0 983 EVALUABLE BAM_REFUTED
659_btT UNK EVPL chr17 75811752 chr17 76007620 DUP MantaDUP:TANDEM:36137:0:1:0:0:0 TRUTH 0 0 1071 4081 17 73807833 17 74003701 0 1071 EVALUABLE BAM_REFUTED
659_btT PROCR INTERGENIC chr20 35177042 chr20 35177782 INV MantaINV:39633:0:1:0:0:0 TRUTH 358 0 3034 583 20 33764845 20 33765585 358 583 EVALUABLE BAM_CONFIRMED
659_btT ETV6 SLC15A5 chr12 11866323 chr12 16220452 DUP MantaDUP:TANDEM:27801:0:1:0:0:0 TRUTH 0 0 9692 0 12 12019257 12 16373386 0 0 UNEVALUABLE UNEVALUABLE
659_btT SWI5 NUP188 chr9 128276336 chr9 129000027 DUP MantaDUP:TANDEM:23088:0:1:0:0:0 TRUTH 0 0 6568 821 9 131038615 9 131762306 0 821 EVALUABLE BAM_REFUTED
659_btT EFS ZFHX2 chr14 23359890 chr14 23527623 DUP MantaDUP:TANDEM:30683:0:1:0:0:0 TRUTH 0 0 4427 1248 14 23829099 14 23996832 0 1248 EVALUABLE BAM_REFUTED
659_bvq PLEKHA6 PHF12 chr1 204257612 chr17 28915844 BND MantaBND:3501:0:1:0:0:0:1 TRUTH 0 0 1390 22 1 204226740 17 27242862 0 22 EVALUABLE BAM_REFUTED
659_bvq EPCAM INTERGENIC chr2 47385220 chr2 47508658 DUP MantaDUP:TANDEM:5040:0:1:0:0:0 TRUTH 0 0 3898 0 2 47612359 2 47735797 0 0 UNEVALUABLE UNEVALUABLE
659_bvq WHSC1L1 SEPT1 chr8 38313269 chr16 30378446 BND MantaBND:8466:0:1:0:0:0:1 TRUTH 0 0 9 1235 8 38170787 16 30389767 0 9 UNEVALUABLE UNEVALUABLE
659_bvq TAOK3 TUBGCP6 chr12 118326273 chr22 50220577 BND MantaBND:4:5418:5438:0:0:0:1 TRUTH 0 0 5 12891 12 118764078 22 50659006 0 5 UNEVALUABLE UNEVALUABLE
659_bvq E4F1 PRSS33 chr16 2235102 chr16 2784195 DUP MantaDUP:TANDEM:4:3852:3853:0:0:0 TRUTH 0 0 4033 434 16 2285103 16 2834196 0 434 EVALUABLE BAM_REFUTED
659_bvq C1orf204 INTERGENIC chr1 159840135 chr1 159948173 DUP MantaDUP:TANDEM:2805:0:1:0:0:0 TRUTH 0 0 4259 0 1 159809925 1 159917963 0 0 UNEVALUABLE UNEVALUABLE
659_bvq LAMA5 COL9A3 chr20 62332635 chr20 62832608 DUP MantaDUP:TANDEM:35532:1:3:0:2:0 TRUTH 0 0 1606 598 20 60907691 20 61463960 0 598 EVALUABLE BAM_REFUTED
659_bvq INTERGENIC ERBB3 chr8 128274729 chr12 56098819 BND MantaBND:21078:0:1:0:0:0:0 TRUTH 0 0 0 2389 8 129286975 12 56492603 0 0 UNEVALUABLE UNEVALUABLE
659_bvq TUBGCP6 INTERGENIC chr22 50219183 chr22 50621167 DUP MantaDUP:TANDEM:9436:1:4:0:0:0 TRUTH 0 0 10140 0 22 50657612 22 51059595 0 0 UNEVALUABLE UNEVALUABLE
659_bvq SF1 MAP3K11 chr11 64773074 chr11 65603262 DUP MantaDUP:TANDEM:25423:0:1:0:0:0 TRUTH 0 0 2133 4 11 64540546 11 65370733 0 4 UNEVALUABLE UNEVALUABLE
659_bvq INTERGENIC LAMA5 chr20 62308866 chr20 62332848 DEL MantaDEL:35532:1:5:0:0:0 TRUTH 0 0 1788 2064 20 60883922 20 60907904 0 1788 EVALUABLE BAM_REFUTED
659_bvq S100A7L2 INTERGENIC chr1 153438225 chr14 74438825 BND MantaBND:2309:0:1:0:0:0:1 TRUTH 0 0 431 1 1 153410701 14 74905528 0 1 UNEVALUABLE UNEVALUABLE
659_bvq IP6K2 INTERGENIC chr3 48689598 chr7 102723143 BND MantaBND:8470:0:1:0:0:0:0 TRUTH 0 0 647 2 3 48727031 7 102363590 0 2 UNEVALUABLE UNEVALUABLE
659_bvq BRCA1 INTERGENIC chr17 43057559 chr17 47930979 DEL MantaDEL:34507:0:1:0:0:0 TRUTH 0 0 3774 7 17 41209576 17 46008345 0 7 UNEVALUABLE UNEVALUABLE
659_bvq SLC39A11 EVPL chr17 72934202 chr17 76019560 DUP MantaDUP:TANDEM:35075:0:1:0:0:0 TRUTH 0 0 20 1161 17 70930341 17 74015641 0 20 EVALUABLE BAM_REFUTED
659_bvq NMNAT2 DOCK3 chr1 183252700 chr3 51143579 BND MantaBND:3139:0:1:0:0:0:1 TRUTH 0 0 370 14 1 183221835 3 51181010 0 14 UNEVALUABLE UNEVALUABLE
659_bvq ADRM1 INTERGENIC chr20 62308126 chr20 62801541 INV MantaINV:39202:0:1:0:0:0 TRUTH 0 0 2800 0 20 60883182 20 61432893 0 0 UNEVALUABLE UNEVALUABLE
659_bvq INTERGENIC UNC13D chr11 64977949 chr17 75827863 BND MantaBND:25372:0:1:0:0:0:1 TRUTH 0 0 10 3654 11 64745421 17 73823944 0 10 UNEVALUABLE UNEVALUABLE
659_bvq TNK1 INTERGENIC chr17 7384719 chr17 7918830 DUP MantaDUP:TANDEM:33654:0:1:0:0:0 TRUTH 0 0 2095 2 17 7288038 17 7822148 0 2 UNEVALUABLE UNEVALUABLE
659_c8w MUC16 INTERGENIC chr19 8980691 chr19 8988185 INV MantaINV:41192:0:1:0:0:0 TRUTH 0 0 2643 16 19 9091367 19 9098861 0 16 UNEVALUABLE UNEVALUABLE
659_c8w BRAF AGAP3 chr7 140792513 chr7 151128155 INV MantaINV:1:5035:5037:0:0:0 TRUTH 0 0 8902 368 7 140492313 7 150825242 0 368 EVALUABLE BAM_REFUTED
659_c8w BRAF AGAP3 chr7 140792503 chr7 151128157 INV MantaINV:1:5035:5037:1:3:0 TRUTH 0 0 8867 371 7 140492303 7 150825244 0 371 EVALUABLE BAM_REFUTED
659_c8w C2orf57 PTCHD4 chr2 231594005 chr6 47929732 BND MantaBND:8203:0:2:0:0:0:1 TRUTH 0 0 1836 0 2 232458716 6 47897468 0 0 UNEVALUABLE UNEVALUABLE
659_c8w C2orf57 INTERGENIC chr2 231594004 chrX 48606397 BND MantaBND:8203:0:1:0:1:0:1 TRUTH 0 0 1839 0 2 232458715 X 48464785 0 0 UNEVALUABLE UNEVALUABLE
659_cFT TRABD2B UCK2 chr1 47854935 chr1 165895627 INV MantaINV:1561:0:1:0:0:0 TRUTH 0 0 0 764 1 48320607 1 165864864 0 0 UNEVALUABLE UNEVALUABLE
659_cFT TACSTD2 ALDH9A1 chr1 58576799 chr1 165685142 DUP MantaDUP:TANDEM:0:352:354:0:0:0 TRUTH 0 0 5132 0 1 59042471 1 165654379 0 0 UNEVALUABLE UNEVALUABLE
659_cFT TACSTD2 INTERGENIC chr1 58576802 chr1 187425247 DUP MantaDUP:TANDEM:0:352:357:0:0:0 TRUTH 0 0 5118 6 1 59042474 1 187394379 0 6 UNEVALUABLE UNEVALUABLE
659_cFT TACSTD2 INTERGENIC chr1 58577050 chr1 105647050 DEL MantaDEL:0:352:355:0:0:0 TRUTH 0 0 3736 2 1 59042722 1 106189672 0 2 UNEVALUABLE UNEVALUABLE
659_cFT INTERGENIC RB1CC1 chr1 58620263 chr8 52661139 BND MantaBND:0:356:365:0:0:0:1 TRUTH 0 0 2 1630 1 59085935 8 53573699 0 2 UNEVALUABLE UNEVALUABLE
659_cFT INTERGENIC NIPBL chr1 59163206 chr5 37026281 BND MantaBND:1926:0:1:0:0:0:0 TRUTH 0 0 1 229 1 59628878 5 37026383 0 1 UNEVALUABLE UNEVALUABLE
659_cFT INTERGENIC FRS2 chr1 105270967 chr12 69571357 BND MantaBND:0:4214:4234:0:0:0:1 TRUTH 0 0 2 1520 1 105813589 12 69965137 0 2 UNEVALUABLE UNEVALUABLE
659_cFT PBXIP1 INTERGENIC chr1 154946023 chr11 97062937 BND MantaBND:0:564:566:0:0:0:1 TRUTH 0 0 2589 0 1 154918499 11 96933937 0 0 UNEVALUABLE UNEVALUABLE
659_cFT INTERGENIC UGT3A1 chr1 162839763 chr5 35965524 BND MantaBND:3837:0:1:0:0:0:1 TRUTH 0 0 5 2645 1 162809553 5 35965626 0 5 UNEVALUABLE UNEVALUABLE
659_cFT INTERGENIC DGAT2 chr1 164536726 chr11 75796456 BND MantaBND:4084:0:1:0:0:0:1 TRUTH 0 0 0 765 1 164505963 11 75507501 0 0 UNEVALUABLE UNEVALUABLE
659_cFT CREG1 DNM3 chr1 167553615 chr1 172125538 DEL MantaDEL:4136:0:1:0:0:0 TRUTH 0 0 1021 1 1 167522852 1 172094678 0 1 UNEVALUABLE UNEVALUABLE
659_cFT ADCY10 INTERGENIC chr1 167829287 chr5 36342000 BND MantaBND:4193:0:1:0:0:0:1 TRUTH 0 0 731 0 1 167798525 5 36342102 0 0 UNEVALUABLE UNEVALUABLE
659_cFT DNM3 INTERGENIC chr1 172131275 chr11 97826931 BND MantaBND:0:794:795:0:0:0:1 TRUTH 0 0 473 0 1 172100415 11 97697931 0 0 UNEVALUABLE UNEVALUABLE
659_cFT INTERGENIC C12orf40 chr1 173329629 chr12 39682955 BND MantaBND:4367:0:1:0:0:0:0 TRUTH 0 0 0 1348 1 173298768 12 40076757 0 0 UNEVALUABLE UNEVALUABLE
659_cFT RB1CC1 UVRAG chr8 52661253 chr11 76116069 BND MantaBND:0:356:2998:0:0:0:0 TRUTH 0 0 1494 465 8 53573813 11 75827113 0 465 EVALUABLE BAM_REFUTED
659_cQZ BRAF PTPRJ chr7 140782272 chr11 48159447 BND MantaBND:22303:0:1:1:0:0:1 TRUTH 0 0 3260 332 7 140482072 11 48180999 0 332 EVALUABLE BAM_REFUTED
659_cQZ RBFOX2 PLA2G6 chr22 35783933 chr22 38145465 DEL MantaDEL:40748:1:2:0:0:0 TRUTH 0 0 4 417 22 36179980 22 38541472 0 4 UNEVALUABLE UNEVALUABLE
659_cQZ KCTD17 TEF chr22 37062519 chr22 41391054 DEL MantaDEL:1:10156:10158:0:0:0 TRUTH 0 0 2598 6 22 37458559 22 41787058 0 6 UNEVALUABLE UNEVALUABLE
659_cQZ KCTD17 TRIOBP chr22 37061702 chr22 37720413 INV MantaINV:46143:0:1:0:0:0 TRUTH 0 0 3080 15 22 37457742 22 38116420 0 15 UNEVALUABLE UNEVALUABLE
659_cQZ BRAF PTPRJ chr7 140782209 chr11 48159461 BND MantaBND:22303:0:1:0:0:0:1 TRUTH 0 0 3366 354 7 140482009 11 48181013 0 354 EVALUABLE BAM_REFUTED
659_cQZ DRG1 SYN3 chr22 31423375 chr22 33030059 DUP MantaDUP:TANDEM:45648:1:2:0:0:0 TRUTH 0 0 577 2 22 31819361 22 33426044 0 2 UNEVALUABLE UNEVALUABLE
659_cQZ INTERGENIC POLR3GL chr1 116717007 chr1 145978029 DEL MantaDEL:2383:0:1:0:0:0 TRUTH 0 0 2 1253 1 117259629 1 145457056 0 2 UNEVALUABLE UNEVALUABLE
659_cQZ HIRA INTERGENIC chr22 19361263 chr22 22129245 INV MantaINV:44904:1:2:0:0:0 TRUTH 0 0 690 4 22 19348786 22 22483639 0 4 UNEVALUABLE UNEVALUABLE
659_cQZ INTERGENIC CYC1 chr6 56434026 chr8 144097072 BND MantaBND:19040:0:1:0:0:0:1 TRUTH 0 0 33 1285 6 56298824 8 145151975 0 33 EVALUABLE BAM_REFUTED
659_csY KDM4C ST6GALNAC1 chr9 6929996 chr17 76629524 BND MantaBND:1:20484:20525:0:0:0:0 TRUTH 0 0 0 2384 9 6929996 17 74625606 0 0 UNEVALUABLE UNEVALUABLE
659_csY INTERGENIC ST6GALNAC1 chr9 7486729 chr17 76629596 BND MantaBND:1:20484:20526:0:0:0:1 TRUTH 0 0 0 2241 9 7486729 17 74625678 0 0 UNEVALUABLE UNEVALUABLE
659_csY STARD10 INTERGENIC chr11 72781054 chrX 156025302 BND MantaBND:25872:0:1:0:0:0:0 TRUTH 0 0 585 1410 11 72492099 X 155254967 0 585 EVALUABLE BAM_REFUTED
659_csY INTERGENIC NAALAD2 chr11 80947131 chr11 90163343 DUP MantaDUP:TANDEM:19257:0:1:0:0:0 TRUTH 0 0 0 1176 11 80658174 11 89896511 0 0 UNEVALUABLE UNEVALUABLE
659_csY GCOM1 INTERGENIC chr15 57714637 chr15 77095839 DEL MantaDEL:31614:0:1:0:0:0 TRUTH 0 0 925 0 15 58006835 15 77388181 0 0 UNEVALUABLE UNEVALUABLE
659_csY INTERGENIC BRIP1 chr17 52903127 chr17 61847136 INV MantaINV:1:19895:20011:0:0:0 TRUTH 0 0 1 1411 17 50980487 17 59924497 0 1 UNEVALUABLE UNEVALUABLE
659_csY GDPD1 CLTC chr17 59221975 chr17 59681439 DEL MantaDEL:1:19840:19841:0:0:0 TRUTH 0 0 5 1481 17 57299336 17 57758800 0 5 UNEVALUABLE UNEVALUABLE
659_csY HEATR6 INTERGENIC chr17 60050947 chr17 60420369 DEL MantaDEL:35249:0:1:0:0:0 TRUTH 0 0 541 19 17 58128308 17 58497730 0 19 UNEVALUABLE UNEVALUABLE
659_csY BCAS3 TBX2 chr17 61026439 chr17 61403080 DEL MantaDEL:5967:0:1:0:0:0 TRUTH 0 0 328 1036 17 59103800 17 59480441 0 328 EVALUABLE BAM_REFUTED
659_csY GPRC5C INTERGENIC chr17 74447252 chr17 74899874 DUP MantaDUP:TANDEM:35909:0:1:0:1:0 TRUTH 0 0 1264 1 17 72443391 17 72895970 0 1 UNEVALUABLE UNEVALUABLE
659_csY CD300LB GRB2 chr17 74521702 chr17 75399329 DEL MantaDEL:35911:0:1:0:0:0 TRUTH 0 0 2884 16 17 72517841 17 73395410 0 16 UNEVALUABLE UNEVALUABLE
659_csY KIAA0195 CASKIN2 chr17 75488727 chr17 75501145 INV MantaINV:35907:0:1:0:0:0 TRUTH 0 0 869 1196 17 73484808 17 73497226 0 869 EVALUABLE BAM_REFUTED
659_csY AMELX ARHGAP6 chrX 11298756 chrX 11325715 DEL MantaDEL:1:23879:23888:0:0:0 TRUTH 0 0 3656 5 X 11316876 X 11343835 0 5 UNEVALUABLE UNEVALUABLE
659_d1e CCDC6 FGFR2 chr10 59900331 chr10 121481223 DEL MantaDEL:1:10320:10332:0:2:0 TRUTH 0 0 0 11393 10 61660089 10 123240737 0 0 UNEVALUABLE UNEVALUABLE
659_dCI NFASC MFSD4 chr1 204901058 chr1 205600437 DUP MantaDUP:TANDEM:4757:0:1:0:0:0 TRUTH 0 0 4 319 1 204870186 1 205569565 0 4 UNEVALUABLE UNEVALUABLE
659_dCI MYPN INTERGENIC chr10 68158593 chr10 118271864 INV MantaINV:1800:0:1:0:0:0 TRUTH 0 0 284 11 10 69918350 10 120031376 0 11 UNEVALUABLE UNEVALUABLE
659_dCI FCHSD2 ARHGEF17 chr11 73032506 chr11 73367630 DUP MantaDUP:TANDEM:32522:0:1:0:0:0 TRUTH 0 0 2 1064 11 72743551 11 73078675 0 2 UNEVALUABLE UNEVALUABLE
659_dCI OR6C65 CPXCR1 chr12 55401364 chrX 88754140 BND MantaBND:34536:0:1:0:0:0:0 TRUTH 0 0 1214 1283 12 55795148 X 88009141 0 1214 EVALUABLE BAM_REFUTED
659_dCI PXN RNF10 chr12 120214840 chr12 120545516 DUP MantaDUP:TANDEM:35583:0:1:0:0:0 TRUTH 0 0 2195 19 12 120652643 12 120983319 0 19 UNEVALUABLE UNEVALUABLE
659_dCI INTERGENIC SEMA4B chr15 90135455 chr15 90223632 DUP MantaDUP:TANDEM:39197:0:1:0:0:0 TRUTH 0 0 2 1272 15 90678687 15 90766864 0 2 UNEVALUABLE UNEVALUABLE
659_dCI PKD1 INTERGENIC chr16 2110385 chr16 2844033 DUP MantaDUP:TANDEM:39602:0:1:0:0:0 TRUTH 0 0 2427 14 16 2160386 16 2894034 0 14 UNEVALUABLE UNEVALUABLE
659_dCI GSDMB BRCA1 chr17 39912860 chr17 43115763 DEL MantaDEL:3:14423:14424:0:0:0 TRUTH 0 0 250 4499 17 38069113 17 41267780 0 250 EVALUABLE BAM_REFUTED
659_dCI INTERGENIC ZMYND8 chr20 24387271 chr20 47298372 INV MantaINV:31255:1:4:0:0:0 TRUTH 0 0 2 1898 20 24367907 20 45927116 0 2 UNEVALUABLE UNEVALUABLE
659_dCI ZMYND8 INTERGENIC chr20 47298372 chr20 47443483 INV MantaINV:31255:1:7:1:0:0 TRUTH 0 0 1898 17 20 45927116 20 46072227 0 17 UNEVALUABLE UNEVALUABLE
659_dLs KDM1A INTERGENIC chr1 23030591 chr12 49183695 BND MantaBND:1153:0:1:0:0:0:0 TRUTH 0 0 609 16 1 23357084 12 49577478 0 16 UNEVALUABLE UNEVALUABLE
659_dLs FANCD2 NSD1 chr3 10048804 chr5 177191938 BND MantaBND:6:2731:2732:0:0:0:0 TRUTH 0 0 256 1548 3 10090488 5 176618939 0 256 EVALUABLE BAM_REFUTED
659_dLs NBEAL2 INPP5E chr3 47002434 chr9 136434885 BND MantaBND:17839:0:1:0:0:0:1 TRUTH 0 0 4360 939 3 47043924 9 139329337 0 939 EVALUABLE BAM_REFUTED
659_dLs INTERGENIC STAB1 chr3 52012451 chr3 52522673 DUP MantaDUP:TANDEM:4518:1:2:0:0:0 TRUTH 0 0 259 4618 3 52046467 3 52556689 0 259 EVALUABLE BAM_REFUTED
659_dLs POC1A BAP1 chr3 52126791 chr3 52406300 DUP MantaDUP:TANDEM:17964:0:1:0:4:0 TRUTH 0 0 4 5119 3 52160807 3 52440316 0 4 UNEVALUABLE UNEVALUABLE
659_dLs DNAH1 BAP1 chr3 52394932 chr3 52405604 INV MantaINV:6:1744:1745:0:0:0 TRUTH 0 0 2985 5516 3 52428948 3 52439620 0 2985 EVALUABLE BAM_REFUTED
659_dLs PDLIM5 INTERGENIC chr4 94664882 chr4 94729151 DUP MantaDUP:TANDEM:24364:0:1:0:2:0 TRUTH 0 0 745 8 4 95586033 4 95650302 0 8 UNEVALUABLE UNEVALUABLE
659_dLs MCCC2 INTERGENIC chr5 71634954 chr5 71769419 DUP MantaDUP:TANDEM:27303:0:1:0:0:0 TRUTH 0 0 882 2 5 70930781 5 71065246 0 2 UNEVALUABLE UNEVALUABLE
659_dLs FAM219A GALT chr9 34458146 chr9 34650388 INV MantaINV:38930:1:3:0:0:0 TRUTH 0 0 632 501 9 34458144 9 34650385 0 501 EVALUABLE BAM_REFUTED
659_dLs GALT IL11RA chr9 34650386 chr9 34656917 INV MantaINV:38930:2:3:0:0:0 TRUTH 0 0 501 1738 9 34650383 9 34656914 0 501 EVALUABLE BAM_REFUTED
659_dLs RC3H2 DENND1A chr9 122858859 chr9 123471665 DUP MantaDUP:TANDEM:43691:0:1:0:0:0 TRUTH 0 0 1584 1 9 125621138 9 126233944 0 1 UNEVALUABLE UNEVALUABLE
659_dLs POC1B INTERGENIC chr12 89523648 chr12 89547881 INV MantaINV:9911:1:2:0:0:0 TRUTH 0 0 5427 1 12 89917425 12 89941658 0 1 UNEVALUABLE UNEVALUABLE
659_dLs INTERGENIC BRCA1 chr17 42861775 chr17 43064944 DUP MantaDUP:TANDEM:62079:0:1:0:0:0 TRUTH 0 0 14 4678 17 41013792 17 41216961 0 14 UNEVALUABLE UNEVALUABLE
659_dLs CBX2 INTERGENIC chr17 79784445 chr17 79909949 INV MantaINV:63541:0:3:0:0:0 TRUTH 0 0 4448 2 17 77758244 17 77883748 0 2 UNEVALUABLE UNEVALUABLE
659_dLs CBX2 INTERGENIC chr17 79784581 chr17 79910109 INV MantaINV:63541:0:3:1:0:0 TRUTH 0 0 4155 7 17 77758380 17 77883908 0 7 UNEVALUABLE UNEVALUABLE
659_dLs BRD4 BCAM chr19 15246520 chr19 44821105 INV MantaINV:66116:0:1:0:1:0 TRUTH 0 0 8668 2236 19 15357331 19 45324362 0 2236 EVALUABLE BAM_REFUTED
659_dLs ARHGAP35 SLC8A2 chr19 46918829 chr19 47457530 DUP MantaDUP:TANDEM:47876:1:3:0:0:0 TRUTH 0 0 1956 1727 19 47422086 19 47960787 0 1727 EVALUABLE BAM_REFUTED
659_dLs CDH26 INTERGENIC chr20 60012624 chr20 60312781 DUP MantaDUP:TANDEM:69204:0:1:0:0:0 TRUTH 0 0 803 1 20 58587679 20 58887839 0 1 UNEVALUABLE UNEVALUABLE
659_dLs TCFL5 DIDO1 chr20 62843613 chr20 62881192 DUP MantaDUP:TANDEM:69222:0:1:0:0:0 TRUTH 0 0 0 4727 20 61474965 20 61512544 0 0 UNEVALUABLE UNEVALUABLE
659_dLs INTERGENIC HDAC10 chr22 49697381 chr22 50250427 INV MantaINV:70868:0:1:0:0:0 TRUTH 0 0 2 1826 22 50091029 22 50688856 0 2 UNEVALUABLE UNEVALUABLE
659_e4m B4GALT2 TBCB chr1 43986523 chr19 36120749 BND MantaBND:3299:0:1:0:0:0:1 TRUTH 0 0 0 377 1 44452195 19 36611651 0 0 UNEVALUABLE UNEVALUABLE
659_e4m INTERGENIC NVL chr1 224089571 chr1 224275451 DUP MantaDUP:TANDEM:9735:0:1:0:0:0 TRUTH 0 0 5 491 1 224277273 1 224463153 0 5 UNEVALUABLE UNEVALUABLE
659_e4m INTERGENIC SEC62 chr3 169352634 chr3 169992699 DUP MantaDUP:TANDEM:14873:1:2:0:0:0 TRUTH 0 0 0 1328 3 169070422 3 169710487 0 0 UNEVALUABLE UNEVALUABLE
659_e4m RMND1 SYNE1 chr6 151409674 chr6 152344197 DUP MantaDUP:TANDEM:38068:0:1:0:0:0 TRUTH 0 0 3 866 6 151730809 6 152665332 0 3 UNEVALUABLE UNEVALUABLE
659_e4m INTERGENIC FGFR2 chr7 39595407 chr10 121482254 BND MantaBND:2:6823:6843:0:0:0:1 TRUTH 0 0 0 4464 7 39635006 10 123241768 0 0 UNEVALUABLE UNEVALUABLE
659_e4m LRRC24 C8orf82 chr8 144526331 chr8 144527540 DEL MantaDEL:46260:0:1:0:0:0 TRUTH 0 0 0 1705 8 145751715 8 145752924 0 0 UNEVALUABLE UNEVALUABLE
659_e4m BRSK2 INTERGENIC chr11 1438342 chr11 1648333 DUP MantaDUP:TANDEM:53069:0:1:0:0:0 TRUTH 0 0 323 1 11 1459572 11 1669563 0 1 UNEVALUABLE UNEVALUABLE
659_e4m INTERGENIC BAZ2A chr12 55731386 chr12 56606059 DUP MantaDUP:TANDEM:2:8090:8093:2:0:0 TRUTH 0 0 12 1252 12 56125170 12 56999843 0 12 UNEVALUABLE UNEVALUABLE
659_e4m MYO9A EPOR chr15 71866327 chr19 11383131 BND MantaBND:66645:0:1:0:0:0:1 TRUTH 0 0 0 1178 15 72158668 19 11493807 0 0 UNEVALUABLE UNEVALUABLE
659_e4m BCL2L1 TPX2 chr20 31707809 chr20 31783920 INV MantaINV:78616:0:1:0:0:0 TRUTH 0 0 6 756 20 30295612 20 30371723 0 6 UNEVALUABLE UNEVALUABLE
659_egZ PRSS12 NPAS3 chr4 118294943 chr14 33519239 BND MantaBND:18662:0:1:0:0:0:1 TRUTH 0 0 724 6 4 119216098 14 33988445 0 6 UNEVALUABLE UNEVALUABLE
659_egZ INTERGENIC ARHGAP20 chr11 110576322 chr11 110578247 DEL MantaDEL:37958:0:1:0:0:0 TRUTH 0 0 4 3395 11 110447046 11 110448971 0 4 UNEVALUABLE UNEVALUABLE
659_egZ TP53 SSH2 chr17 7675065 chr17 29794584 DUP MantaDUP:TANDEM:23478:1:2:0:0:0 TRUTH 0 0 4195 13 17 7578383 17 28121602 0 13 UNEVALUABLE UNEVALUABLE
659_egZ SHISA6 DNAH9 chr17 11272603 chr17 11883666 DUP MantaDUP:TANDEM:47331:0:1:0:0:0 TRUTH 0 0 3 1072 17 11175920 17 11786983 0 3 UNEVALUABLE UNEVALUABLE
659_egZ NLGN2 INTERGENIC chr17 7414980 chr17 12151054 DUP MantaDUP:TANDEM:47325:0:1:0:0:0 TRUTH 0 0 1631 3 17 7318299 17 12054371 0 3 UNEVALUABLE UNEVALUABLE
659_egZ MPRIP TOP3A chr17 17158748 chr17 18312569 DUP MantaDUP:TANDEM:47607:0:1:0:0:0 TRUTH 0 0 1733 11 17 17062062 17 18215883 0 11 UNEVALUABLE UNEVALUABLE
659_ein PCDHA6 PCDHA8 chr5 140829932 chr5 140843162 DEL MantaDEL:36421:0:1:0:0:0 TRUTH 0 0 9168 10390 5 140209517 5 140222747 0 9168 EVALUABLE BAM_REFUTED
659_ein INTERGENIC TMEM72 chr8 29726478 chr10 44935054 BND MantaBND:50533:0:1:0:0:0:0 TRUTH 0 0 0 2143 8 29583994 10 45430502 0 0 UNEVALUABLE UNEVALUABLE
659_ein FGFR2 TACC2 chr10 121481624 chr10 122031383 INV MantaINV:33587:1:3:0:4:0 TRUTH 0 0 7768 21 10 123241138 10 123790898 0 21 EVALUABLE BAM_REFUTED
659_ein FGFR2 TACC2 chr10 121482191 chr10 122031452 INV MantaINV:33587:3:4:0:0:0 TRUTH 0 0 4884 25 10 123241705 10 123790967 0 25 EVALUABLE BAM_REFUTED
659_ein NLRX1 NOL4 chr11 119179885 chr18 34097337 BND MantaBND:67524:0:1:0:0:0:1 TRUTH 0 0 1727 0 11 119050594 18 31677301 0 0 UNEVALUABLE UNEVALUABLE
659_ein INTERGENIC NELFCD chr20 58981160 chr20 58981280 DEL MantaDEL:91697:0:0:0:0:0 TRUTH 157 0 320 317 20 57556215 20 57556335 157 317 EVALUABLE BAM_CONFIRMED
659_eyD MADD CTNND1 chr11 47282915 chr11 57801438 DUP MantaDUP:TANDEM:33822:0:1:0:0:0 TRUTH 0 0 1509 776 11 47304466 11 57568910 0 776 EVALUABLE BAM_REFUTED
659_eyD ERG TMPRSS2 chr21 38435342 chr21 41505538 DEL MantaDEL:48581:0:1:0:0:0 TRUTH 0 0 0 9539 21 39807265 21 42877465 0 0 UNEVALUABLE UNEVALUABLE
659_wQ INTERGENIC H2AFJ chr12 8439813 chr12 14774548 INV MantaINV:27274:0:1:0:0:0 TRUTH 0 0 0 1177 12 8592409 12 14927482 0 0 UNEVALUABLE UNEVALUABLE
1173_9C INTERGENIC TSSK1B chr5 107686789 chr5 113434832 INV MantaINV:9528:0:1:0:0:0 TRUTH 0 0 4 1956 5 107022490 5 112770529 0 4 UNEVALUABLE UNEVALUABLE
1173_9C TSSK1B MCC chr5 113434351 chr5 113436911 INV MantaINV:9568:0:1:0:0:0 TRUTH 0 0 3799 0 5 112770048 5 112772608 0 0 UNEVALUABLE UNEVALUABLE
1173_9C INTERGENIC FEM1C chr5 115520840 chr5 115525207 INV MantaINV:9579:0:1:0:0:0 TRUTH 0 0 2 2604 5 114856537 5 114860904 0 2 UNEVALUABLE UNEVALUABLE
1173_9C FEM1C TRERF1 chr5 115525117 chr6 42435604 BND MantaBND:9579:2:3:0:0:0:1 TRUTH 0 0 2823 6 5 114860814 6 42403342 0 6 UNEVALUABLE UNEVALUABLE
1173_9C RARA INTERGENIC chr17 40354432 chr17 41798965 INV MantaINV:2:3877:3879:0:0:0 TRUTH 0 0 2160 18 17 38510684 17 39955217 0 18 UNEVALUABLE UNEVALUABLE
1173_F0Y PRKG1 CSTF2T chr10 51689116 chr10 51699110 DUP MantaDUP:TANDEM:25484:0:1:0:0:0 TRUTH 0 0 1 3771 10 53448876 10 53458870 0 1 UNEVALUABLE UNEVALUABLE
1173_IT6 INTERGENIC CYP4Z1 chr1 46992397 chr1 47067588 DEL MantaDEL:2047:0:1:0:0:0 TRUTH 0 0 0 874 1 47458069 1 47533260 0 0 UNEVALUABLE UNEVALUABLE
1173_IT6 CRAT PPP2R4 chr9 129109009 chr9 129118967 DEL MantaDEL:28265:0:1:0:0:0 TRUTH 0 0 2419 4 9 131871288 9 131881246 0 4 UNEVALUABLE UNEVALUABLE
1173_FM HLA-DRB5 HLA-DRB1 chr6 32519662 chr6 32581733 DEL MantaDEL:23015:1:3:0:0:0 TRUTH 4 0 348 1162 6 32487439 6 32549510 4 348 EVALUABLE BAM_CONFIRMED
659_ND INADL ANXA4 chr1 62117832 chr2 69804571 BND MantaBND:6:633:634:0:0:0:1 TRUTH 0 0 324 563 1 62583504 2 70031703 0 324 EVALUABLE BAM_REFUTED
659_ND TPR INTERGENIC chr1 186359918 chr1 188786314 DEL MantaDEL:5507:0:1:0:0:0 TRUTH 0 0 1107 0 1 186329050 1 188755445 0 0 UNEVALUABLE UNEVALUABLE
659_ND DNAJC21 TMPRSS2 chr5 34934574 chr21 41498136 BND MantaBND:20574:1:4:0:0:0:0 TRUTH 0 0 29 9938 5 34934679 21 42870063 0 29 EVALUABLE BAM_REFUTED
659_Yr INTERGENIC GRM4 chr6 30029690 chr6 34133490 DUP MantaDUP:TANDEM:20041:0:1:0:0:0 TRUTH 0 0 0 2200 6 29997467 6 34101267 0 0 UNEVALUABLE UNEVALUABLE
659_Yr SMC5 COL15A1 chr9 70322567 chr9 99049856 DEL MantaDEL:28463:0:1:0:0:0 TRUTH 0 0 4 1386 9 72937483 9 101812138 0 4 UNEVALUABLE UNEVALUABLE
659_Yr ZNF483 INTERGENIC chr9 111542290 chr9 112960687 INV MantaINV:29089:0:1:0:0:0 TRUTH 0 0 3281 8 9 114304570 9 115722967 0 8 UNEVALUABLE UNEVALUABLE
659_Yr PELI3 ZCCHC3 chr11 66475719 chr20 298867 BND MantaBND:33564:0:1:0:0:0:1 TRUTH 0 0 2776 558 11 66243190 20 279511 0 558 EVALUABLE BAM_REFUTED
659_Yr INTERGENIC PRDM10 chr11 124015255 chr11 129918629 INV MantaINV:34547:1:3:0:0:0 TRUTH 0 0 1255 1234 11 123885962 11 129788524 0 1234 EVALUABLE BAM_REFUTED
659_Yr TMEM132E HUNK chr17 34637507 chr21 31952171 BND MantaBND:2:498:11515:0:0:0:0 TRUTH 0 0 3521 3 17 32964526 21 33324483 0 3 UNEVALUABLE UNEVALUABLE
659_Yr INTERGENIC PDK2 chr17 36119946 chr17 50097511 INV MantaINV:44770:0:1:0:0:0 TRUTH 0 0 0 696 17 34447336 17 48174875 0 0 UNEVALUABLE UNEVALUABLE
659_Yr MLLT6 RUNX1 chr17 38706362 chr21 34842519 BND MantaBND:29071:1:2:0:0:0:1 TRUTH 0 0 35 6068 17 36862615 21 36214816 0 35 EVALUABLE BAM_REFUTED
659_Yr TNS4 SLC16A6 chr17 40479799 chr17 68284946 DUP MantaDUP:TANDEM:45087:0:1:0:0:0 TRUTH 0 0 1250 1 17 38636051 17 66281087 0 1 UNEVALUABLE UNEVALUABLE
659_Yr KRTAP4-5 INTERGENIC chr17 41149291 chr21 28683804 BND MantaBND:2:199:201:0:0:0:1 TRUTH 0 0 7184 0 17 39305543 21 30056126 0 0 UNEVALUABLE UNEVALUABLE
659_Yr KRT32 INTERGENIC chr17 41460113 chr21 33187096 BND MantaBND:45035:0:1:0:0:0:1 TRUTH 0 0 871 0 17 39616365 21 34559401 0 0 UNEVALUABLE UNEVALUABLE
659_Yr INTERGENIC RUNX1 chr21 32232779 chr21 34838938 DUP MantaDUP:TANDEM:51676:0:1:0:0:0 TRUTH 0 0 2 9079 21 33605091 21 36211235 0 2 UNEVALUABLE UNEVALUABLE
659_Yr INTERGENIC RUNX1 chr21 34341587 chr21 34847912 DUP MantaDUP:TANDEM:2:13586:13587:0:0:0 TRUTH 0 0 1 7093 21 35713886 21 36220209 0 1 UNEVALUABLE UNEVALUABLE
659_bHx PTPRR TMTC2 chr12 70892787 chr12 82940473 INV MantaINV:16887:1:2:0:0:0 TRUTH 0 0 1251 14 12 71286567 12 83334252 0 14 UNEVALUABLE UNEVALUABLE
659_bHx INTERGENIC PPP1R1A chr6 117655774 chr12 54580212 BND MantaBND:42789:0:1:0:0:0:0 TRUTH 0 0 0 2487 6 117976937 12 54973996 0 0 UNEVALUABLE UNEVALUABLE
659_bHx INTERGENIC SHPRH chr6 131777231 chr6 145921204 INV MantaINV:43354:0:1:0:0:0 TRUTH 0 0 0 880 6 132098371 6 146242340 0 0 UNEVALUABLE UNEVALUABLE
659_bHx PLA2R1 INTERGENIC chr2 159987226 chr10 108724740 BND MantaBND:18553:0:1:0:0:0:1 TRUTH 0 0 541 0 2 160843737 10 110484498 0 0 UNEVALUABLE UNEVALUABLE
659_bHx INTERGENIC PTPRB chr6 154732806 chr12 70524488 BND MantaBND:44194:1:3:0:0:0:1 TRUTH 0 0 119 670 6 155053940 12 70918268 0 119 EVALUABLE BAM_REFUTED
659_bHx ARID1B FNDC1 chr6 156970580 chr6 159234074 DEL MantaDEL:3:2248:2335:0:0:0 TRUTH 0 0 5 3881 6 157291714 6 159655106 0 5 UNEVALUABLE UNEVALUABLE
659_bHx SRGAP1 MSRB3 chr12 64097320 chr12 65427405 DEL MantaDEL:70801:0:1:0:0:0 TRUTH 0 0 791 0 12 64491100 12 65821185 0 0 UNEVALUABLE UNEVALUABLE
659_bHx ITGA5 INTERGENIC chr12 54396329 chr12 55662310 INV MantaINV:69600:0:1:0:0:0 TRUTH 0 0 332 13 12 54790113 12 56056094 0 13 UNEVALUABLE UNEVALUABLE
659_bHx STXBP5 NOL11 chr6 147284550 chr17 67726599 BND MantaBND:44825:0:1:0:0:0:0 TRUTH 0 0 0 680 6 147605686 17 65722715 0 0 UNEVALUABLE UNEVALUABLE
659_bHx INTERGENIC MRPL12 chr8 20992143 chr17 81704374 BND MantaBND:52536:0:1:0:0:0:1 TRUTH 0 0 1 1265 8 20849654 17 79671404 0 1 UNEVALUABLE UNEVALUABLE
659_bHx ITGA7 INTERGENIC chr12 55700935 chr12 58519250 INV MantaINV:69893:0:1:0:0:0 TRUTH 0 0 1411 5 12 56094719 12 58913033 0 5 UNEVALUABLE UNEVALUABLE
659_bHx INTERGENIC OR4D6 chr11 59455807 chr11 59457041 DUP MantaDUP:TANDEM:65177:0:1:0:0:0 TRUTH 0 0 4 1382 11 59223280 11 59224514 0 4 UNEVALUABLE UNEVALUABLE
659_bOn INTERGENIC ETF1 chr2 41690253 chr5 138511468 BND MantaBND:10:4466:4467:0:5:0:1 TRUTH 0 0 0 2924 2 41917393 5 137847157 0 0 UNEVALUABLE UNEVALUABLE
659_bOn INTERGENIC NEUROD6 chr2 142160643 chr7 31339148 BND MantaBND:33398:0:1:0:0:0:1 TRUTH 0 0 1 2593 2 142918212 7 31378762 0 1 UNEVALUABLE UNEVALUABLE
659_bOn INTERGENIC TTBK2 chr2 163448735 chr15 42878556 BND MantaBND:16486:1:13:0:3:0:0 TRUTH 0 0 2 2271 2 164305245 15 43170754 0 2 UNEVALUABLE UNEVALUABLE
659_bOn CCNYL1 ST18 chr2 207751039 chr8 52389023 BND MantaBND:38568:0:1:0:0:0:0 TRUTH 0 0 668 0 2 208615763 8 53301583 0 0 UNEVALUABLE UNEVALUABLE
659_bOn SPHKAP INTERGENIC chr2 227982123 chr20 11100479 BND MantaBND:39969:0:1:0:0:0:0 TRUTH 0 0 2947 16 2 228846839 20 11081127 0 16 UNEVALUABLE UNEVALUABLE
659_bOn INTERGENIC RNASE11 chr3 109768906 chr14 20584409 BND MantaBND:48490:0:1:0:0:0:0 TRUTH 0 0 1 2458 3 109487753 14 21052568 0 1 UNEVALUABLE UNEVALUABLE
659_bOn ETV1 INTERGENIC chr7 13941941 chr8 84071905 BND MantaBND:81121:0:1:0:2:0:1 TRUTH 0 0 3390 0 7 13981566 8 84984140 0 0 UNEVALUABLE UNEVALUABLE
659_bOn RAD21 MYO16 chr8 116852643 chr13 109065896 BND MantaBND:13543:1:5:0:0:0:0 TRUTH 0 0 3551 0 8 117864882 13 109718244 0 0 UNEVALUABLE UNEVALUABLE
659_bOn KDM4C OTOGL chr9 7102336 chr12 80219866 BND MantaBND:96037:0:1:0:0:0:0 TRUTH 0 0 1 474 9 7102336 12 80613646 0 1 UNEVALUABLE UNEVALUABLE
659_bOn NPAP1 PIGS chr15 24680075 chr17 28554354 BND MantaBND:129008:0:1:0:0:0:1 TRUTH 0 0 24 2387 15 24925222 17 26881372 0 24 EVALUABLE BAM_REFUTED
659_bOn CTSH MCTP2 chr15 78944884 chr15 94475987 INV MantaINV:131403:0:1:0:0:0 TRUTH 0 0 1000 11 15 79237226 15 95019216 0 11 UNEVALUABLE UNEVALUABLE
659_bOn ARHGAP28 EWSR1 chr18 6900299 chr22 29292672 BND MantaBND:79819:1:4:0:6:0:0 TRUTH 0 0 2 9412 18 6900298 22 29688661 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ KLHL32 EMX2 chr6 96951574 chr10 117543620 BND MantaBND:1:2416:2418:0:0:0:0 TRUTH 0 0 0 2956 6 97399450 10 119303131 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ PTPRT SGK2 chr20 42677581 chr20 43583558 DUP MantaDUP:TANDEM:3786:3:15:1:0:0 TRUTH 0 0 1560 1560 20 41306221 20 42212198 0 1560 EVALUABLE BAM_REFUTED
659_bnZ SALL4 LAMA5 chr20 51790304 chr20 62353383 INV MantaINV:35081:0:1:0:0:0 TRUTH 0 0 3598 472 20 50406843 20 60928439 0 472 EVALUABLE BAM_REFUTED
659_bnZ CXCL5 ARHGAP24 chr4 73998541 chr4 85975755 INV MantaINV:10606:0:1:0:0:0 TRUTH 0 0 2003 2 4 74864258 4 86896908 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ INTERGENIC MAD2L1 chr4 116522801 chr4 120062016 INV MantaINV:11075:0:1:0:0:0 TRUTH 0 0 0 491 4 117443957 4 120983171 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ CDK5RAP1 TOX2 chr20 33401509 chr20 43918874 DEL MantaDEL:26971:0:1:0:0:0 TRUTH 0 0 823 0 20 31989315 20 42547514 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ SGK2 INTERGENIC chr20 43583386 chr20 52464212 DEL MantaDEL:3786:3:13:0:0:0 TRUTH 0 0 1648 2 20 42212026 20 51080751 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ INTERGENIC TIFA chr4 111087137 chr4 112278355 INV MantaINV:11044:0:1:0:0:0 TRUTH 0 0 0 2278 4 112008293 4 113199511 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ INTERGENIC PTPRK chr6 126612854 chr6 127983298 INV MantaINV:15294:0:1:0:0:0 TRUTH 0 0 5 1524 6 126934000 6 128304443 0 5 UNEVALUABLE UNEVALUABLE
659_bnZ PTPRT SGK2 chr20 42678089 chr20 43583551 DUP MantaDUP:TANDEM:3786:3:15:0:1:0 TRUTH 0 0 1866 1563 20 41306729 20 42212191 0 1563 EVALUABLE BAM_REFUTED
659_bnZ REL INTERGENIC chr2 60894474 chr9 61178270 BND MantaBND:5030:0:2:0:0:0:1 TRUTH 0 0 1676 6 2 61121609 9 43642498 0 6 UNEVALUABLE UNEVALUABLE
659_bnZ INTERGENIC ERMARD chr6 168390123 chr6 169769694 INV MantaINV:15931:0:1:0:0:0 TRUTH 0 0 0 868 6 168790803 6 170169790 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ INTERGENIC FRAS1 chr4 12719959 chr4 78539359 DUP MantaDUP:TANDEM:10009:0:1:0:0:0 TRUTH 0 0 0 630 4 12721583 4 79460513 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ INTERGENIC CENPE chr4 102402927 chr4 103158832 INV MantaINV:10904:0:1:0:0:0 TRUTH 0 0 5 2319 4 103324084 4 104079989 0 5 UNEVALUABLE UNEVALUABLE
659_bnZ INTERGENIC BPIFA1 chr13 108507800 chr20 33240347 BND MantaBND:26734:0:1:0:0:0:1 TRUTH 0 0 0 1762 13 109160148 20 31828153 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ INTERGENIC RUNX1 chr15 90377595 chr21 34834810 BND MantaBND:5017:1:2:0:0:0:0 TRUTH 0 0 2 13427 15 90920827 21 36207107 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ ZADH2 INTERGENIC chr18 75201481 chr18 76633691 INV MantaINV:32698:0:1:0:0:0 TRUTH 0 0 2194 4 18 72913436 18 74345648 0 4 UNEVALUABLE UNEVALUABLE
659_bnZ EZR PDE10A chr6 158785459 chr6 165507806 DEL MantaDEL:15851:0:1:0:0:0 TRUTH 0 0 1340 0 6 159206491 6 165921294 0 0 UNEVALUABLE UNEVALUABLE
659_bnZ PTPRT LAMA5 chr20 42677895 chr20 62364344 DEL MantaDEL:3786:15:19:0:1:0 TRUTH 0 0 1863 2 20 41306535 20 60939400 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ SGK2 ATP9A chr20 43583616 chr20 51688397 INV MantaINV:3786:3:10:1:0:0 TRUTH 0 0 1543 50 20 42212256 20 50304936 0 50 EVALUABLE BAM_REFUTED
659_bnZ INTERGENIC SFMBT2 chr10 5988494 chr10 7205903 DEL MantaDEL:21369:0:1:0:0:0 TRUTH 0 0 4 3514 10 6030457 10 7247865 0 4 UNEVALUABLE UNEVALUABLE
659_bnZ ERMARD INTERGENIC chr6 169759012 chr16 35661144 BND MantaBND:15950:0:3:0:0:0:1 TRUTH 0 0 543 2 6 170159108 16 34895515 0 2 UNEVALUABLE UNEVALUABLE
659_bnZ SGK2 INTERGENIC chr20 43583576 chr20 52669916 INV MantaINV:3786:3:18:1:0:0 TRUTH 0 0 1554 2 20 42212216 20 51286455 0 2 UNEVALUABLE UNEVALUABLE
659_boM INTERGENIC ZNF311 chr6 28981764 chr6 28995924 DUP MantaDUP:TANDEM:12352:1:2:0:0:0 TRUTH 0 0 0 4720 6 28949541 6 28963701 0 0 UNEVALUABLE UNEVALUABLE
659_boM EGFR SEPT14 chr7 55200626 chr7 55800352 INV MantaINV:9:3282:3284:0:0:0 TRUTH 0 0 10421 9 7 55268319 7 55868045 0 9 UNEVALUABLE UNEVALUABLE
659_boM EGFR SEPT14 chr7 55201224 chr7 55802769 DEL MantaDEL:9:3282:3292:0:0:0 TRUTH 0 0 12732 8 7 55268917 7 55870462 0 8 UNEVALUABLE UNEVALUABLE
659_boM C7orf49 INTERGENIC chr7 135167032 chr7 135170803 DUP MantaDUP:TANDEM:33095:0:1:0:0:0 TRUTH 0 0 4040 4 7 134851784 7 134855555 0 4 UNEVALUABLE UNEVALUABLE
659_boM DPP3 SPTBN2 chr11 66504700 chr11 66698514 DUP MantaDUP:TANDEM:30033:1:2:0:0:0 TRUTH 0 0 1200 1574 11 66272171 11 66465985 0 1200 EVALUABLE BAM_REFUTED
659_boM INTERGENIC GPC5 chr13 79435574 chr13 91448846 INV MantaINV:47726:0:1:0:0:0 TRUTH 0 0 0 775 13 80009709 13 92101100 0 0 UNEVALUABLE UNEVALUABLE
659_boM OTUB2 DDX24 chr14 94036738 chr14 94055147 INV MantaINV:49736:0:1:0:0:0 TRUTH 0 0 8 1061 14 94503084 14 94521493 0 8 UNEVALUABLE UNEVALUABLE
659_boM MAST3 KIAA1683 chr19 18130863 chr19 18257410 DUP MantaDUP:TANDEM:39827:1:2:0:0:0 TRUTH 0 0 953 3493 19 18241673 19 18368220 0 953 EVALUABLE BAM_REFUTED
659_cD2 INTERGENIC ENPP3 chr3 34003982 chr6 131652642 BND MantaBND:11212:0:1:0:0:0:0 TRUTH 0 0 0 858 3 34045474 6 131973782 0 0 UNEVALUABLE UNEVALUABLE
659_cD2 PXK ABCC3 chr3 58338368 chr17 50679811 BND MantaBND:12081:0:1:0:0:0:1 TRUTH 0 0 20 462 3 58324095 17 48757172 0 20 EVALUABLE BAM_REFUTED
659_cD2 INTERGENIC CDKN1B chr12 12269630 chr12 12718831 DEL MantaDEL:34461:0:1:0:0:0 TRUTH 0 0 7 2537 12 12422564 12 12871765 0 7 UNEVALUABLE UNEVALUABLE
659_cD2 ERG TMPRSS2 chr21 38503282 chr21 41500478 INV MantaINV:49930:0:1:1:0:0 TRUTH 0 0 6 10251 21 39875206 21 42872405 0 6 UNEVALUABLE UNEVALUABLE
659_cIW INTERGENIC NPBWR1 chr4 18650643 chr8 52940313 BND MantaBND:12484:0:1:0:0:0:1 TRUTH 0 0 0 3882 4 18652266 8 53852873 0 0 UNEVALUABLE UNEVALUABLE
659_cIW C6 TAF1D chr5 41142860 chr11 93733464 BND MantaBND:14833:0:1:0:0:0:1 TRUTH 0 0 581 1 5 41142962 11 93466630 0 1 UNEVALUABLE UNEVALUABLE
659_cIW INTERGENIC HIST1H1C chr6 26053433 chr6 26056079 DEL MantaDEL:16867:0:1:0:0:0 TRUTH 0 0 10 2081 6 26053661 6 26056307 0 10 UNEVALUABLE UNEVALUABLE
659_cIW GUSB AC068533.7 chr7 65967908 chr7 66130860 DEL MantaDEL:20094:0:1:0:0:0 TRUTH 0 0 482 221 7 65432895 7 65595847 0 221 EVALUABLE BAM_REFUTED
659_cIW LRGUK SLC35B4 chr7 134163468 chr7 134316300 DEL MantaDEL:21230:0:1:0:0:0 TRUTH 0 0 697 461 7 133848220 7 134001052 0 461 EVALUABLE BAM_REFUTED
659_cIW RAB11FIP4 RARA chr17 31412127 chr17 40343478 DUP MantaDUP:TANDEM:4:6221:6228:0:0:0 TRUTH 0 0 0 12352 17 29739145 17 38499730 0 0 UNEVALUABLE UNEVALUABLE
659_cIW RARA INTERGENIC chr17 40341073 chr17 50249074 INV MantaINV:4:6218:6220:1:0:0 TRUTH 0 0 11157 0 17 38497325 17 48326435 0 0 UNEVALUABLE UNEVALUABLE
659_cIW RARA INTERGENIC chr17 40341749 chr17 50207609 DUP MantaDUP:TANDEM:4:6221:6222:0:0:0 TRUTH 0 0 15609 1 17 38498001 17 48284970 0 1 UNEVALUABLE UNEVALUABLE
659_cIW TNS4 UTP18 chr17 40481391 chr17 51285352 DEL MantaDEL:37077:0:1:0:0:0 TRUTH 0 0 109 742 17 38637643 17 49362713 0 109 EVALUABLE BAM_REFUTED
659_cIW ABCC3 INTERGENIC chr17 50675643 chr17 52245074 INV MantaINV:37543:0:1:0:0:0 TRUTH 0 0 2471 0 17 48753004 17 50322434 0 0 UNEVALUABLE UNEVALUABLE
659_cJ6 BCL2L15 SAMD4A chr1 113881654 chr14 54652277 BND MantaBND:2419:0:1:0:0:0:0 TRUTH 0 0 1211 3 1 114424276 14 55118995 0 3 UNEVALUABLE UNEVALUABLE
659_cJ6 STRN INTERGENIC chr2 36893914 chr4 183324033 BND MantaBND:6733:0:2:0:0:0:0 TRUTH 0 0 741 3 2 37121057 4 184245186 0 3 UNEVALUABLE UNEVALUABLE
659_cJ6 ARHGEF33 FGFR2 chr2 38926461 chr10 121483529 BND MantaBND:13:7074:7093:1:0:0:0 TRUTH 0 0 1 5707 2 39153602 10 123243043 0 1 UNEVALUABLE UNEVALUABLE
659_cJ6 ARHGEF33 FGFR2 chr2 38926754 chr10 121483430 BND MantaBND:13:7074:7093:0:0:0:1 TRUTH 0 0 1 5913 2 39153895 10 123242944 0 1 UNEVALUABLE UNEVALUABLE
659_cRa TAPBPL RP11-362K2.2 chr12 6460863 chr12 58621610 INV MantaINV:29686:0:1:0:0:0 TRUTH 0 0 2400 1 12 6570029 12 59015392 0 1 UNEVALUABLE UNEVALUABLE
659_cRa SRGAP1 XPOT chr12 64023223 chr12 64431647 DEL MantaDEL:3:8104:8105:0:0:0 TRUTH 0 0 1 1021 12 64417003 12 64825427 0 1 UNEVALUABLE UNEVALUABLE
659_cpY SLC30A2 INTERGENIC chr1 26039832 chr1 109974629 INV MantaINV:922:0:1:0:0:0 TRUTH 0 0 693 0 1 26366323 1 110517251 0 0 UNEVALUABLE UNEVALUABLE
659_cpY ALK ACTG2 chr2 29227419 chr2 73898044 INV MantaINV:7065:0:1:0:0:0 TRUTH 0 0 8712 4 2 29450285 2 74125171 0 4 UNEVALUABLE UNEVALUABLE
659_cpY ARHGAP33 INTERGENIC chr19 35780267 chr19 36692706 INV MantaINV:50940:0:1:0:0:0 TRUTH 0 0 1600 0 19 36271169 19 37183608 0 0 UNEVALUABLE UNEVALUABLE
659_cvt RAD21 DOCK9 chr8 116858572 chr13 98824419 BND MantaBND:23502:0:1:0:0:0:0 TRUTH 0 0 1080 469 8 117870811 13 99476673 0 469 EVALUABLE BAM_REFUTED
659_cvt ATP1B2 TP53 chr17 7657161 chr17 7676214 INV MantaINV:37729:0:1:0:1:0 TRUTH 0 0 18 4650 17 7560479 17 7579532 0 18 UNEVALUABLE UNEVALUABLE
659_cvt ATP1B2 TP53 chr17 7657162 chr17 7676218 INV MantaINV:37729:0:1:1:0:0 TRUTH 0 0 18 4649 17 7560480 17 7579536 0 18 UNEVALUABLE UNEVALUABLE
659_cwR INTERGENIC UBAP1 chr1 110595265 chr9 34180119 BND MantaBND:11:1005:1006:0:0:0:0 TRUTH 0 0 3324 4 1 111137887 9 34180117 0 4 UNEVALUABLE UNEVALUABLE
659_cwR INTERGENIC UBAP1 chr1 110595674 chr9 34195329 BND MantaBND:11:1005:1007:0:0:0:1 TRUTH 0 0 3004 24 1 111138296 9 34195327 0 24 EVALUABLE BAM_REFUTED
659_cwR COBLL1 INTERGENIC chr2 164841208 chr2 220711887 INV MantaINV:11:2780:2781:0:0:0 TRUTH 0 0 1532 0 2 165697718 2 221576607 0 0 UNEVALUABLE UNEVALUABLE
659_cwR CAMLG ATOX1 chr5 134741203 chr5 151752185 INV MantaINV:19382:0:1:0:0:0 TRUTH 0 0 973 466 5 134076893 5 151131746 0 466 EVALUABLE BAM_REFUTED
659_cwR INTERGENIC UBAP1 chr9 7709364 chr9 34234341 INV MantaINV:29165:0:1:0:0:0 TRUTH 0 0 0 466 9 7709364 9 34234339 0 0 UNEVALUABLE UNEVALUABLE
659_cwR INTERGENIC MYO3A chr10 4355851 chr10 25955009 INV MantaINV:30894:0:1:0:0:0 TRUTH 0 0 1 627 10 4398043 10 26243938 0 1 UNEVALUABLE UNEVALUABLE
659_cwR INTERGENIC SRMS chr20 39827511 chr20 63544224 DUP MantaDUP:TANDEM:25817:1:2:0:0:0 TRUTH 0 0 20 1070 20 38456153 20 62175577 0 20 EVALUABLE BAM_REFUTED
659_cwR C20orf62 INTERGENIC chr20 44462124 chr20 45089945 INV MantaINV:10919:0:1:0:0:0 TRUTH 0 0 1160 0 20 43090764 20 43718586 0 0 UNEVALUABLE UNEVALUABLE
659_cwR INTERGENIC SLC17A9 chr20 50390700 chr20 62957138 DEL MantaDEL:9714:1:3:0:0:0 TRUTH 0 0 2 4452 20 49007237 20 61588490 0 2 UNEVALUABLE UNEVALUABLE
659_cwR BCAS4 LIME1 chr20 50839541 chr20 63736909 INV MantaINV:11:18739:19029:0:1:0 TRUTH 0 0 8 3155 20 49456078 20 62368261 0 8 UNEVALUABLE UNEVALUABLE
659_cwR BCAS4 CABLES2 chr20 50839893 chr20 62391313 DUP MantaDUP:TANDEM:26553:1:2:0:0:0 TRUTH 0 0 33 1952 20 49456430 20 60966369 0 33 EVALUABLE BAM_REFUTED
659_cwR INTERGENIC PRPF6 chr20 51253505 chr20 64031996 DEL MantaDEL:50264:0:1:0:0:0 TRUTH 0 0 0 1081 20 49870042 20 62663349 0 0 UNEVALUABLE UNEVALUABLE
659_cwR INTERGENIC SOX18 chr20 53500437 chr20 64049290 DEL MantaDEL:11:18740:18996:0:0:0 TRUTH 0 0 1 2033 20 52116976 20 62680643 0 1 UNEVALUABLE UNEVALUABLE
659_cwR INTERGENIC NKAIN4 chr20 62429924 chr20 63253413 DEL MantaDEL:11:18932:18934:0:0:0 TRUTH 0 0 0 1167 20 61004980 20 61884765 0 0 UNEVALUABLE UNEVALUABLE
659_dB3 ALK NPM1 chr2 29224584 chr5 171391842 BND MantaBND:6:1122:1123:0:0:0:0 TRUTH 1 0 8917 7751 2 29447450 5 170818846 1 7751 EVALUABLE BAM_AMBIGUOUS
659_dB3 ALK NPM1 chr2 29224709 chr5 171391900 BND MantaBND:6:1122:1123:1:0:0:1 TRUTH 1 0 8903 7915 2 29447575 5 170818904 1 7915 EVALUABLE BAM_AMBIGUOUS
659_dKV INTERGENIC ALK chr1 154165966 chr2 29224494 BND MantaBND:2316:0:1:0:0:0:1 TRUTH 0 0 153 10216 1 154138442 2 29447360 0 153 EVALUABLE BAM_REFUTED
659_dcz FPGT-TNNI3K INTERGENIC chr1 74436126 chr21 34011004 BND MantaBND:3760:0:1:0:3:0:1 TRUTH 0 0 1153 9 1 74901810 21 35383305 0 9 UNEVALUABLE UNEVALUABLE
659_dcz RIF1 INTERGENIC chr2 151446572 chr3 66987507 BND MantaBND:17436:0:1:0:1:0:1 TRUTH 0 0 522 0 2 152303086 3 67037931 0 0 UNEVALUABLE UNEVALUABLE
659_dcz FAM13A CTTN chr4 88928905 chr11 70435232 BND MantaBND:32342:0:1:0:0:0:1 TRUTH 0 0 0 2280 4 89850056 11 70281338 0 0 UNEVALUABLE UNEVALUABLE
659_dcz INTERGENIC ETV1 chr4 188340215 chr7 13952756 BND MantaBND:35399:0:1:0:0:0:0 TRUTH 0 0 12 8309 4 189261369 7 13992381 0 12 UNEVALUABLE UNEVALUABLE
659_dcz NUP43 INTERGENIC chr6 149726977 chr14 55927611 BND MantaBND:46394:0:1:0:0:0:1 TRUTH 0 0 977 0 6 150048113 14 56394329 0 0 UNEVALUABLE UNEVALUABLE
659_dcz GCK FNDC3A chr7 44145621 chr13 49208632 BND MantaBND:48333:0:1:0:0:0:1 TRUTH 0 0 2155 0 7 44185220 13 49782768 0 0 UNEVALUABLE UNEVALUABLE
659_dcz TNKS MSRA chr8 9726715 chr8 10303723 DEL MantaDEL:51929:0:1:0:0:0 TRUTH 0 0 347 0 8 9584225 8 10161233 0 0 UNEVALUABLE UNEVALUABLE
659_dcz CNTLN PELI2 chr9 17299845 chr14 56134714 BND MantaBND:55978:0:1:0:0:0:0 TRUTH 0 0 1065 1 9 17299843 14 56601432 0 1 UNEVALUABLE UNEVALUABLE
659_dcz SLC28A3 DNAJC25 chr9 84292730 chr9 111634938 INV MantaINV:25972:0:1:0:0:0 TRUTH 0 0 347 0 9 86907645 9 114397218 0 0 UNEVALUABLE UNEVALUABLE
659_dhR INTERGENIC CLK1 chr2 200788913 chr2 200859773 DUP MantaDUP:TANDEM:21576:0:1:0:0:0 TRUTH 0 0 18 1852 2 201653636 2 201724496 0 18 UNEVALUABLE UNEVALUABLE
659_dhR NBEAL2 C3orf18 chr3 46995808 chr3 50561385 INV MantaINV:25529:0:1:0:0:0 TRUTH 0 0 6532 1491 3 47037298 3 50598816 0 1491 EVALUABLE BAM_REFUTED
659_dhR NBEAL2 INTERGENIC chr3 47001972 chr3 50590162 INV MantaINV:25577:0:1:0:0:0 TRUTH 0 0 5246 33 3 47043462 3 50627593 0 33 EVALUABLE BAM_REFUTED
659_dhR APC PLEC chr5 112826849 chr8 143927523 BND MantaBND:38715:0:1:0:0:0:1 TRUTH 0 0 2100 3206 5 112162546 8 145001691 0 2100 EVALUABLE BAM_REFUTED
659_dhR DGKZ INTERGENIC chr11 46371538 chr11 50002219 INV MantaINV:65855:0:1:0:0:0 TRUTH 0 0 2198 1 11 46393088 11 50023758 0 1 UNEVALUABLE UNEVALUABLE
659_dhR CACNB3 DDX23 chr12 48818774 chr12 48830747 DUP MantaDUP:TANDEM:7:8090:8113:0:0:0 TRUTH 0 0 3071 2463 12 49212557 12 49224530 0 2463 EVALUABLE BAM_REFUTED
659_dhR INTERGENIC ZNF605 chr12 132918758 chr12 132925635 DUP MantaDUP:TANDEM:72391:0:1:0:0:0 TRUTH 0 0 11 1766 12 133495344 12 133502221 0 11 UNEVALUABLE UNEVALUABLE
659_dhR BRCA1 TMEM106A chr17 43049168 chr17 43215042 DEL MantaDEL:83161:0:1:0:0:0 TRUTH 0 0 10273 24 17 41201185 17 41367061 0 24 EVALUABLE BAM_REFUTED
659_dhR RNF157 KCNN1 chr17 76193192 chr19 17981853 BND MantaBND:84319:0:1:0:0:0:1 TRUTH 0 0 0 2202 17 74189273 19 18092662 0 0 UNEVALUABLE UNEVALUABLE
659_dhR QRICH2 IL12RB1 chr17 76274179 chr19 18080161 BND MantaBND:84358:0:1:0:0:0:0 TRUTH 0 0 1203 36 17 74270260 19 18190971 0 36 EVALUABLE BAM_REFUTED
659_dhR SGSH SLC26A11 chr17 80211698 chr17 80221685 INV MantaINV:84522:0:1:0:0:0 TRUTH 0 0 915 1363 17 78185497 17 78195484 0 915 EVALUABLE BAM_REFUTED
659_eK7 BRAF MBP chr7 140781847 chr18 77094965 BND MantaBND:6:7574:7575:0:0:0:1 TRUTH 0 0 3074 3 7 140481647 18 74806921 0 3 UNEVALUABLE UNEVALUABLE
659_ebP C12orf42 EDC3 chr12 103322772 chr15 74675000 BND MantaBND:23646:0:1:0:0:0:1 TRUTH 0 0 0 803 12 103716550 15 74967341 0 0 UNEVALUABLE UNEVALUABLE
659_ebP HDAC7 WSCD2 chr12 47795692 chr12 108190789 INV MantaINV:3:4566:4567:0:0:0 TRUTH 0 0 2281 2 12 48189475 12 108584566 0 2 UNEVALUABLE UNEVALUABLE
659_ebP SLC41A2 INTERGENIC chr12 104866509 chr12 118547434 INV MantaINV:3:5273:5274:0:3:0 TRUTH 0 0 1148 1 12 105260287 12 118985239 0 1 UNEVALUABLE UNEVALUABLE
659_ebP STAB2 INTERGENIC chr12 103622098 chr12 109337935 DEL MantaDEL:3:5233:5234:0:0:0 TRUTH 0 0 481 5 12 104015876 12 109775740 0 5 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC NEDD4L chr18 55958809 chr18 58329069 DEL MantaDEL:30706:0:1:0:0:0 TRUTH 0 0 0 791 18 53626040 18 55996301 0 0 UNEVALUABLE UNEVALUABLE
659_ebP NT5DC3 ATP8B1 chr12 103778010 chr18 57706384 BND MantaBND:23183:1:2:0:0:0:1 TRUTH 0 0 1111 496 12 104171788 18 55373616 0 496 EVALUABLE BAM_REFUTED
659_ebP LPCAT3 INTERGENIC chr12 7018323 chr12 65732543 DEL MantaDEL:21972:0:1:0:0:0 TRUTH 0 0 818 0 12 7125627 12 66126323 0 0 UNEVALUABLE UNEVALUABLE
659_ebP ERC1 HPD chr12 1422012 chr12 121854777 INV MantaINV:21851:0:1:0:0:0 TRUTH 0 0 2 196 12 1531178 12 122292683 0 2 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC TCF19 chr6 4154162 chr6 31161844 INV MantaINV:12271:0:1:0:0:0 TRUTH 0 0 0 2569 6 4154396 6 31129621 0 0 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC ALPK2 chr18 56047504 chr18 58481900 INV MantaINV:30711:0:1:0:0:0 TRUTH 0 0 0 646 18 53714735 18 56149132 0 0 UNEVALUABLE UNEVALUABLE
659_ebP LPCAT3 INTERGENIC chr12 6977378 chr12 109693689 INV MantaINV:22018:0:1:0:0:0 TRUTH 0 0 1785 0 12 7086540 12 110131494 0 0 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC SV2B chr11 82808773 chr15 91258490 BND MantaBND:17302:1:2:0:0:0:1 TRUTH 0 0 2 1120 11 82519815 15 91801720 0 2 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC KCTD10 chr12 29953559 chr12 109471199 INV MantaINV:22406:0:1:0:6:0 TRUTH 0 0 0 1076 12 30106492 12 109909004 0 0 UNEVALUABLE UNEVALUABLE
659_ebP SETBP1 INTERGENIC chr18 44810609 chr18 46569582 INV MantaINV:30512:0:1:0:0:0 TRUTH 0 0 0 691 18 42390574 18 44149545 0 0 UNEVALUABLE UNEVALUABLE
659_ebP ULK3 INTERGENIC chr15 74840307 chr15 87105715 INV MantaINV:26652:0:1:0:0:0 TRUTH 0 0 1768 0 15 75132648 15 87648946 0 0 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC SV2B chr11 82808831 chr15 91258468 BND MantaBND:17302:1:2:1:0:0:0 TRUTH 0 0 2 1120 11 82519873 15 91801698 0 2 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC SLC14A2 chr18 44647550 chr18 45639745 DEL MantaDEL:30515:0:1:0:0:0 TRUTH 0 0 0 616 18 42227515 18 43219710 0 0 UNEVALUABLE UNEVALUABLE
659_ebP ATP1A4 GRIP1 chr1 160171747 chr12 66366722 BND MantaBND:2894:0:1:0:0:0:1 TRUTH 0 0 1406 2 1 160141537 12 66760502 0 2 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC MSANTD2 chr11 82322135 chr11 124800144 DUP MantaDUP:TANDEM:21374:0:1:0:0:0 TRUTH 0 0 0 3075 11 82033177 11 124670040 0 0 UNEVALUABLE UNEVALUABLE
659_ebP HMCN1 CACNA1C chr1 186095459 chr12 2206597 BND MantaBND:3238:0:1:0:0:0:0 TRUTH 0 0 982 0 1 186064591 12 2315763 0 0 UNEVALUABLE UNEVALUABLE
659_ebP NUAK1 GIT2 chr12 106067004 chr12 109943962 DEL MantaDEL:3:5280:5281:0:0:0 TRUTH 0 0 2359 0 12 106460782 12 110381767 0 0 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC SPPL3 chr12 94530004 chr12 120767579 INV MantaINV:23537:0:1:0:0:0 TRUTH 0 0 3 847 12 94923780 12 121205382 0 3 UNEVALUABLE UNEVALUABLE
659_ebP INTERGENIC ARHGEF9 chrX 35890002 chrX 63754523 DUP MantaDUP:TANDEM:34738:0:1:0:0:0 TRUTH 0 0 0 1572 X 35908119 X 62974403 0 0 UNEVALUABLE UNEVALUABLE
659_epG DHX8 GRB2 chr17 43525361 chr17 75347970 INV MantaINV:29532:0:1:0:0:0 TRUTH 0 0 3044 2 17 41602729 17 73344051 0 2 UNEVALUABLE UNEVALUABLE
659_epG ERG TMPRSS2 chr21 38491964 chr21 41496140 DEL MantaDEL:33665:0:1:0:0:0 TRUTH 0 0 7 9323 21 39863888 21 42868067 0 7 UNEVALUABLE UNEVALUABLE
659_epG PTEN RBM20 chr10 87897390 chr10 110812474 DEL MantaDEL:20632:0:1:0:0:0 TRUTH 0 0 14 2435 10 89657147 10 112572232 0 14 UNEVALUABLE UNEVALUABLE
659_epG INTERGENIC SGPL1 chr10 70587127 chr10 70876581 DUP MantaDUP:TANDEM:20459:0:1:0:0:0 TRUTH 0 0 10 589 10 72346883 10 72636338 0 10 UNEVALUABLE UNEVALUABLE
659_epG KIAA0247 LLGL2 chr14 69669153 chr17 75563432 BND MantaBND:25854:0:1:0:0:0:1 TRUTH 0 0 16 2223 14 70135870 17 73559513 0 16 UNEVALUABLE UNEVALUABLE
659_epG MPDU1 INTERGENIC chr17 7587262 chr17 14662419 INV MantaINV:28825:0:1:0:0:0 TRUTH 0 0 2089 5 17 7490580 17 14565736 0 5 UNEVALUABLE UNEVALUABLE
659_epG PRKCA QRICH2 chr17 66744120 chr17 76278136 INV MantaINV:25847:1:2:0:0:0 TRUTH 0 0 0 1063 17 64740238 17 74274217 0 0 UNEVALUABLE UNEVALUABLE
659_epG HNRNPUL1 CHMP4B chr19 41294587 chr20 33814586 BND MantaBND:32089:0:1:0:0:0:1 TRUTH 0 0 1439 8 19 41800492 20 32402392 0 8 UNEVALUABLE UNEVALUABLE
659_epG INTERGENIC QRICH2 chr14 68873297 chr17 76278122 BND MantaBND:25847:0:1:0:0:0:1 TRUTH 0 0 2 1063 14 69340014 17 74274203 0 2 UNEVALUABLE UNEVALUABLE
659_ewn RBM5 INTERGENIC chr3 50110615 chr3 50273635 DUP MantaDUP:TANDEM:9154:0:1:0:0:0 TRUTH 0 0 862 3634 3 50148048 3 50311066 0 862 EVALUABLE BAM_REFUTED
659_ewn NAB2 STAT6 chr12 57093059 chr12 57111324 INV MantaINV:28900:0:1:0:0:0 TRUTH 0 0 10663 0 12 57486842 12 57505107 0 0 UNEVALUABLE UNEVALUABLE
659_ewn NAB2 STAT6 chr12 57093059 chr12 57111324 INV MantaINV:28900:0:1:1:0:0 TRUTH 0 0 10663 0 12 57486842 12 57505107 0 0 UNEVALUABLE UNEVALUABLE
659_ewn TCF3 EMR1 chr19 1612332 chr19 6934907 INV MantaINV:33490:1:2:0:0:0 TRUTH 0 0 4149 484 19 1612331 19 6934918 0 484 EVALUABLE BAM_REFUTED
659_exZ INTERGENIC FOXRED1 chr11 104900341 chr11 126275356 DEL MantaDEL:42617:0:1:0:0:0 TRUTH 0 0 22 749 11 104771068 11 126145251 0 22 EVALUABLE BAM_REFUTED
659_exZ GRIA4 LAYN chr11 105649182 chr11 111555215 DEL MantaDEL:42608:0:1:0:0:0 TRUTH 0 0 0 314 11 105519909 11 111425940 0 0 UNEVALUABLE UNEVALUABLE
659_exZ DDX10 PKNOX2 chr11 108723164 chr11 125372650 DEL MantaDEL:42659:0:1:0:0:0 TRUTH 0 0 1908 0 11 108593891 11 125242546 0 0 UNEVALUABLE UNEVALUABLE
659_exZ FLI1 EWSR1 chr11 128776010 chr22 29290310 BND MantaBND:43147:0:1:0:0:0:1 TRUTH 0 0 3 6860 11 128645905 22 29686299 0 3 UNEVALUABLE UNEVALUABLE
659_exZ INTERGENIC EWSR1 chr11 128827179 chr22 29291587 BND MantaBND:43114:0:1:0:0:0:1 TRUTH 0 0 2 9167 11 128697074 22 29687576 0 2 UNEVALUABLE UNEVALUABLE
659_fap INTERGENIC C1QTNF5 chr11 119323866 chr11 119343002 INV MantaINV:36871:0:1:0:0:0 TRUTH 0 0 0 2112 11 119194576 11 119213712 0 0 UNEVALUABLE UNEVALUABLE
659_fap ALK EML4 chr2 29223767 chr2 42300957 INV MantaINV:7115:0:1:0:0:0 TRUTH 0 0 11491 517 2 29446633 2 42528097 0 517 EVALUABLE BAM_REFUTED
659_fap INTERGENIC HOXB6 chr5 147186364 chr17 48598111 BND MantaBND:19397:0:1:0:0:0:0 TRUTH 0 0 2 1950 5 146565927 17 46675473 0 2 UNEVALUABLE UNEVALUABLE
659_fap UBR1 EPB42 chr15 43049003 chr15 43209316 DUP MantaDUP:TANDEM:43203:0:1:0:0:0 TRUTH 0 0 132 1247 15 43341201 15 43501514 0 132 EVALUABLE BAM_REFUTED
659_fap INTERGENIC NFRKB chr11 119057147 chr11 129882561 DEL MantaDEL:36760:1:3:0:0:0 TRUTH 0 0 2 1258 11 118927858 11 129752456 0 2 UNEVALUABLE UNEVALUABLE
659_fap RGS14 CDKN1C chr5 177371117 chr11 2884803 BND MantaBND:7:1534:1535:0:0:0:0 TRUTH 0 0 2113 1730 5 176798118 11 2906033 0 1730 EVALUABLE BAM_REFUTED
659_fap ALK INTERGENIC chr2 29223889 chr2 89800290 DUP MantaDUP:TANDEM:7115:0:2:0:1:0 TRUTH 0 0 10519 1 2 29446755 2 89839100 0 1 UNEVALUABLE UNEVALUABLE
659_hv INTERGENIC ERLIN2 chr3 89527378 chr8 37745808 BND MantaBND:8003:0:1:0:0:0:0 TRUTH 0 0 0 1866 3 89576528 8 37603326 0 0 UNEVALUABLE UNEVALUABLE
659_hv TBC1D1 INTERGENIC chr4 38119996 chr4 38703109 INV MantaINV:9539:0:1:0:0:0 TRUTH 0 0 691 1 4 38121617 4 38704730 0 1 UNEVALUABLE UNEVALUABLE
659_hv WHSC1 INTERGENIC chr4 1941914 chr4 42324620 DUP MantaDUP:TANDEM:9375:0:1:0:0:0 TRUTH 0 0 7192 3 4 1943641 4 42326637 0 3 UNEVALUABLE UNEVALUABLE
659_hv INTERGENIC CDK5RAP2 chr9 118893546 chr9 120407140 DEL MantaDEL:18803:0:1:0:0:0 TRUTH 0 0 0 788 9 121655824 9 123169418 0 0 UNEVALUABLE UNEVALUABLE
659_hv INTERGENIC ABCA1 chr9 82377609 chr9 104799568 DEL MantaDEL:18376:0:1:0:2:0 TRUTH 0 0 0 2513 9 84992524 9 107561849 0 0 UNEVALUABLE UNEVALUABLE
659_hv EXOSC2 ABCA2 chr9 130700877 chr9 137024614 DUP MantaDUP:TANDEM:19036:0:1:0:0:0 TRUTH 0 0 515 779 9 133576264 9 139919066 0 515 EVALUABLE BAM_REFUTED
659_hv SH2D3C C9orf96 chr9 127738917 chr9 133397502 DEL MantaDEL:18910:0:1:0:1:0 TRUTH 0 0 1064 1481 9 130501196 9 136262629 0 1064 EVALUABLE BAM_REFUTED
659_hv ZNF236 INTERGENIC chr18 76937320 chr18 79011588 DEL MantaDEL:30831:0:1:0:0:0 TRUTH 0 0 1074 0 18 74649276 18 76771588 0 0 UNEVALUABLE UNEVALUABLE
659_hv MYLIP LRRK2 chr6 16131134 chr12 40249921 BND MantaBND:12781:0:1:0:0:0:0 TRUTH 0 0 732 679 6 16131365 12 40643723 0 679 EVALUABLE BAM_REFUTED
659_hv INTERGENIC ZNF583 chr14 68650100 chr19 56414071 BND MantaBND:25556:0:1:0:0:0:0 TRUTH 0 0 0 1392 14 69116817 19 56925440 0 0 UNEVALUABLE UNEVALUABLE
659_hv CASS4 INTERGENIC chr20 56437450 chr20 60782471 DUP MantaDUP:TANDEM:7:9001:9002:0:0:0 TRUTH 0 0 1791 0 20 55012506 20 59357527 0 0 UNEVALUABLE UNEVALUABLE
659_hv SH2D3C ABL1 chr9 127746556 chr9 130839674 INV MantaINV:18901:0:1:0:0:0 TRUTH 0 0 121 9292 9 130508835 9 133715061 0 121 EVALUABLE BAM_REFUTED
659_hv CORO1B INTERGENIC chr11 67438386 chr19 51086216 BND MantaBND:21857:0:1:0:0:0:1 TRUTH 0 0 2942 8 11 67205857 19 51589473 0 8 UNEVALUABLE UNEVALUABLE
659_hv NXNL2 ABL1 chr9 88535157 chr9 130851122 DEL MantaDEL:18426:0:1:0:0:0 TRUTH 0 0 1085 5272 9 91150072 9 133726509 0 1085 EVALUABLE BAM_REFUTED
659_hv CCDC17 INTERGENIC chr1 45620344 chr9 100733749 BND MantaBND:7:349:351:0:0:0:1 TRUTH 0 0 2464 5 1 46086016 9 103496031 0 5 UNEVALUABLE UNEVALUABLE
659_hv MAPKAP1 ABCA2 chr9 125556981 chr9 137022843 DEL MantaDEL:7:4733:4734:0:0:0 TRUTH 0 0 1 3040 9 128319260 9 139917295 0 1 UNEVALUABLE UNEVALUABLE
659_hv PPP2R4 SARDH chr9 129136193 chr9 133733980 DUP MantaDUP:TANDEM:18928:0:2:0:0:0 TRUTH 0 0 1142 2063 9 131898472 9 136599102 0 1142 EVALUABLE BAM_REFUTED
659_jS TFE3 NONO chrX 49037798 chrX 71298868 INV MantaINV:45185:0:1:0:0:0 TRUTH 0 0 6595 691 X 48895323 X 70518718 0 691 EVALUABLE BAM_REFUTED
659_jS TFE3 NONO chrX 49037799 chrX 71298868 INV MantaINV:45185:0:1:1:0:0 TRUTH 0 0 6595 691 X 48895324 X 70518718 0 691 EVALUABLE BAM_REFUTED
659_rr ERG TMPRSS2 chr21 38470128 chr21 41500144 DEL MantaDEL:0:49200:49201:0:0:0 TRUTH 0 0 0 10510 21 39842051 21 42872071 0 0 UNEVALUABLE UNEVALUABLE
659_Jq PLEKHA4 IL4I1 chr19 48859569 chr19 49893502 INV MantaINV:3:14627:14629:0:0:0 TRUTH 0 0 1425 9 19 49362826 19 50396759 0 9 UNEVALUABLE UNEVALUABLE
659_Jq GATAD2A DGCR14 chr19 19496737 chr22 19144182 BND MantaBND:64749:0:1:0:0:0:1 TRUTH 0 0 234 3225 19 19607546 22 19131695 0 234 EVALUABLE BAM_REFUTED
659_Jq ANKRD13D INTERGENIC chr11 67299538 chr11 67357091 DUP MantaDUP:TANDEM:49197:0:2:0:0:0 TRUTH 0 0 2342 2 11 67067009 11 67124562 0 2 UNEVALUABLE UNEVALUABLE
659_Jq ARRDC2 MICALL1 chr19 18013793 chr22 37922381 BND MantaBND:3:15778:15779:0:0:0:0 TRUTH 0 0 2 2257 19 18124602 22 38318388 0 2 UNEVALUABLE UNEVALUABLE
659_Jq KCNN1 LTBP4 chr19 17989545 chr19 40608562 INV MantaINV:3:13919:13920:0:0:0 TRUTH 0 0 965 1714 19 18100354 19 41114468 0 965 EVALUABLE BAM_REFUTED
659_Jq ADCK4 ELFN2 chr19 40714303 chr22 37413712 BND MantaBND:65439:0:1:0:0:0:0 TRUTH 0 0 2606 0 19 41220208 22 37809751 0 0 UNEVALUABLE UNEVALUABLE
659_Jq LTBP4 MFNG chr19 40611377 chr22 37476654 BND MantaBND:25982:1:2:0:0:0:0 TRUTH 0 0 2115 488 19 41117283 22 37872692 0 488 EVALUABLE BAM_REFUTED
659_Jq PLEKHF1 TST chr19 29666266 chr22 37018645 BND MantaBND:65027:0:1:0:0:0:1 TRUTH 0 0 543 2863 19 30157173 22 37414686 0 543 EVALUABLE BAM_REFUTED
659_Jq PLEKHA4 TRPM4 chr19 48859575 chr19 49175470 DEL MantaDEL:3:14627:14628:0:0:0 TRUTH 0 0 1419 19 19 49362832 19 49678727 0 19 UNEVALUABLE UNEVALUABLE
659_Jq INTERGENIC CDC42EP1 chr19 23605414 chr22 37568599 BND MantaBND:3:15715:15745:0:0:0:1 TRUTH 0 0 16 2096 19 23788216 22 37964606 0 16 UNEVALUABLE UNEVALUABLE
659_Jq SBSN ELFN2 chr19 35527028 chr22 37368590 BND MantaBND:3:14250:14320:0:0:0:0 TRUTH 0 0 6769 2 19 36017930 22 37764630 0 2 UNEVALUABLE UNEVALUABLE
659_Jq PVRL2 INTERGENIC chr19 44878833 chr22 24986569 BND MantaBND:65725:0:1:1:0:0:1 TRUTH 0 0 2060 0 19 45382090 22 25382536 0 0 UNEVALUABLE UNEVALUABLE
659_Jq INTERGENIC NUMBL chr19 34076837 chr19 40680948 DEL MantaDEL:65059:0:1:0:0:0 TRUTH 0 0 0 769 19 34567742 19 41186853 0 0 UNEVALUABLE UNEVALUABLE
659_Jq CCT8L2 BCL2L13 chr22 16591695 chr22 17708984 DUP MantaDUP:TANDEM:69143:0:1:0:0:0 TRUTH 0 0 4410 14 22 17072585 22 18191750 0 14 UNEVALUABLE UNEVALUABLE
659_Jq FIBP PACS1 chr11 65884410 chr11 66169814 DUP MantaDUP:TANDEM:49151:0:1:0:0:0 TRUTH 0 0 1403 29 11 65651881 11 65937285 0 29 EVALUABLE BAM_REFUTED
659_Jq RBM42 INTERGENIC chr19 35633088 chr22 37461282 BND MantaBND:3:14362:14363:1:0:0:0 TRUTH 0 0 1277 10 19 36123990 22 37857320 0 10 UNEVALUABLE UNEVALUABLE
659_Jq INTERGENIC CDC42EP1 chr19 29622625 chr22 37568550 BND MantaBND:3:15715:15747:1:0:0:1 TRUTH 0 0 3 2119 19 30113532 22 37964557 0 3 UNEVALUABLE UNEVALUABLE
659_Jq KCTD15 ZNF473 chr19 33812046 chr19 50042525 DEL MantaDEL:3:14233:14234:0:0:0 TRUTH 0 0 3123 20 19 34302951 19 50545782 0 20 EVALUABLE BAM_REFUTED
659_Jq PLEKHF1 INTERGENIC chr19 29674305 chr19 50141566 INV MantaINV:3:14128:14130:1:0:0 TRUTH 0 0 4962 4 19 30165212 19 50644823 0 4 UNEVALUABLE UNEVALUABLE
659_Jq ZNF599 SLC25A1 chr19 34766172 chr22 19178634 BND MantaBND:3:15550:15558:0:0:0:0 TRUTH 0 0 0 1979 19 35257077 22 19166147 0 0 UNEVALUABLE UNEVALUABLE
659_Jq INTERGENIC CARD10 chr19 33564434 chr22 37491287 BND MantaBND:65058:0:1:0:0:0:1 TRUTH 0 0 25 1070 19 34055340 22 37887325 0 25 EVALUABLE BAM_REFUTED
659_Jq LTBP4 INTERGENIC chr19 40606259 chr22 36947798 BND MantaBND:60225:0:1:0:0:0:0 TRUTH 0 0 2105 2 19 41112165 22 37343840 0 2 UNEVALUABLE UNEVALUABLE
659_Jq PVRL2 LENG8 chr19 44872029 chr19 54451474 INV MantaINV:65627:0:1:0:0:0 TRUTH 0 0 1473 533 19 45375286 19 54962651 0 533 EVALUABLE BAM_REFUTED
659_SP ETV6 NTRK3 chr12 11866854 chr15 88036423 BND MantaBND:22895:1:3:1:0:0:0 TRUTH 0 0 10856 1 12 12019788 15 88579654 0 1 UNEVALUABLE UNEVALUABLE
659_SP ETV6 NTRK3 chr12 11866855 chr15 88036392 BND MantaBND:22895:1:3:0:0:0:1 TRUTH 0 0 10846 1 12 12019789 15 88579623 0 1 UNEVALUABLE UNEVALUABLE
659_bl1 ADAR MCM8 chr1 154582417 chr20 5984952 BND MantaBND:8754:0:1:0:0:0:1 TRUTH 0 0 0 625 1 154554893 20 5965598 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 INTERGENIC GABRP chr1 165065417 chr5 170794245 BND MantaBND:9798:0:1:0:0:0:0 TRUTH 0 0 16 297 1 165034654 5 170221249 0 16 UNEVALUABLE UNEVALUABLE
659_bl1 GALNT2 INTERGENIC chr1 230243315 chr17 73844898 BND MantaBND:13546:0:1:0:0:0:1 TRUTH 0 0 1216 10 1 230379061 17 71841037 0 10 UNEVALUABLE UNEVALUABLE
659_bl1 CTNNA2 DAP chr2 79855258 chr5 10681072 BND MantaBND:19433:0:1:0:0:0:1 TRUTH 0 0 0 1494 2 80082384 5 10681184 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 INTERGENIC PRKCH chr3 182352659 chr14 61549739 BND MantaBND:38344:0:1:0:0:0:0 TRUTH 0 0 0 684 3 182070447 14 62016457 0 0 UNEVALUABLE UNEVALUABLE
659_bl1 INTERGENIC MLXIP chr4 45766828 chr12 122138187 BND MantaBND:41215:0:1:0:0:0:0 TRUTH 0 0 3 1522 4 45768845 12 122622734 0 3 UNEVALUABLE UNEVALUABLE
659_bl1 PDGFRA SSH1 chr4 54269608 chr12 108851640 BND MantaBND:27075:1:9:0:5:0:1 TRUTH 0 0 9101 0 4 55135775 12 109245416 0 0 UNEVALUABLE UNEVALUABLE
659_btj INTERGENIC TIMM22 chr7 25540702 chr17 998958 BND MantaBND:31151:0:1:0:0:0:1 TRUTH 0 0 0 1204 7 25580322 17 902198 0 0 UNEVALUABLE UNEVALUABLE
659_btj INTERGENIC CNOT2 chr12 45165714 chr12 70337502 DEL MantaDEL:47761:0:1:0:0:0 TRUTH 0 0 0 423 12 45559497 12 70731282 0 0 UNEVALUABLE UNEVALUABLE
659_btj INTERGENIC MDM1 chr12 53868929 chr12 68325089 DEL MantaDEL:48135:0:1:0:0:0 TRUTH 0 0 0 1376 12 54262713 12 68718869 0 0 UNEVALUABLE UNEVALUABLE
659_btj TSFM EVPL chr12 57793373 chr17 76007442 BND MantaBND:48534:0:1:0:0:0:0 TRUTH 0 0 500 3892 12 58187156 17 74003523 0 500 EVALUABLE BAM_REFUTED
659_btj INTERGENIC COL18A1 chr12 68406873 chr21 45491309 BND MantaBND:48732:0:1:0:0:0:0 TRUTH 0 0 2 863 12 68800653 21 46911223 0 2 UNEVALUABLE UNEVALUABLE
659_btj CNOT2 TMPRSS2 chr12 70315958 chr21 41493300 BND MantaBND:0:12349:12350:0:0:0:0 TRUTH 0 0 0 11542 12 70709738 21 42865227 0 0 UNEVALUABLE UNEVALUABLE
659_btj INTERGENIC BRWD1 chr12 77002385 chr21 39200280 BND MantaBND:48895:0:1:0:0:0:1 TRUTH 0 0 7 904 12 77396165 21 40572206 0 7 UNEVALUABLE UNEVALUABLE
659_btj RASSF9 CDK17 chr12 85805724 chr12 96366842 INV MantaINV:49148:0:1:0:0:0 TRUTH 0 0 2927 4 12 86199502 12 96760620 0 4 UNEVALUABLE UNEVALUABLE
659_btj KITLG S100B chr12 88525776 chr21 46599444 BND MantaBND:49137:0:1:0:0:0:1 TRUTH 0 0 0 593 12 88919553 21 48019357 0 0 UNEVALUABLE UNEVALUABLE
659_btj C12orf55 SVOP chr12 96733754 chr12 108960926 INV MantaINV:49316:0:1:0:0:0 TRUTH 0 0 1 1079 12 97127532 12 109354702 0 1 UNEVALUABLE UNEVALUABLE
659_btj C12orf55 SCYL2 chr12 96763069 chr12 100337438 INV MantaINV:49305:0:1:0:0:0 TRUTH 0 0 1 680 12 97156847 12 100731216 0 1 UNEVALUABLE UNEVALUABLE
659_btj ACAD10 INTERGENIC chr12 111753887 chr21 39737860 BND MantaBND:49780:0:1:0:0:0:1 TRUTH 0 0 1244 0 12 112191691 21 41109787 0 0 UNEVALUABLE UNEVALUABLE
659_btj INTERGENIC SIRT7 chr12 113533081 chr17 81912504 BND MantaBND:49783:0:1:0:0:0:1 TRUTH 0 0 0 1035 12 113970886 17 79870380 0 0 UNEVALUABLE UNEVALUABLE
659_btj INTERGENIC CSNK1D chr12 116424968 chr17 82246598 BND MantaBND:49933:0:1:0:0:0:1 TRUTH 0 0 16 3953 12 116862773 17 80204474 0 16 UNEVALUABLE UNEVALUABLE
659_btj NF1 PRRG3 chr17 31373103 chrX 151700840 BND MantaBND:60299:0:1:0:0:0:1 TRUTH 0 0 0 1087 17 29700121 X 150869312 0 0 UNEVALUABLE UNEVALUABLE
659_btj BRCA1 INTERGENIC chr17 43076480 chr17 48014139 DUP MantaDUP:TANDEM:0:10060:10259:0:0:0 TRUTH 0 0 7041 0 17 41228497 17 46091505 0 0 UNEVALUABLE UNEVALUABLE
659_btj KPNB1 TRIOBP chr17 47681645 chr22 37724594 BND MantaBND:0:12612:12622:0:0:0:0 TRUTH 0 0 17 18774 17 45759011 22 38120601 0 17 UNEVALUABLE UNEVALUABLE
659_btj KIAA1671 TRIOBP chr22 25110738 chr22 37724197 DUP MantaDUP:TANDEM:0:12612:12621:0:1:0 TRUTH 0 0 1 18402 22 25506705 22 38120204 0 1 UNEVALUABLE UNEVALUABLE
659_buD PRKCZ SKI chr1 2156344 chr1 2229315 DUP MantaDUP:TANDEM:132:0:1:0:0:0 TRUTH 0 0 656 4002 1 2087783 1 2160754 0 656 EVALUABLE BAM_REFUTED
659_buD SLC22A17 NSDHL chr14 23348237 chrX 152855617 BND MantaBND:47409:0:1:0:0:0:1 TRUTH 0 0 3379 7 14 23817446 X 152024161 0 7 UNEVALUABLE UNEVALUABLE
659_cCD ARHGEF2 INTERGENIC chr1 155970856 chr1 156391657 DUP MantaDUP:TANDEM:3000:0:2:0:0:0 TRUTH 0 0 3623 0 1 155940647 1 156361449 0 0 UNEVALUABLE UNEVALUABLE
659_cCD INTERGENIC NELFCD chr3 6449809 chr20 58990921 BND MantaBND:8605:0:1:0:0:0:1 TRUTH 0 0 0 1598 3 6491496 20 57565976 0 0 UNEVALUABLE UNEVALUABLE
659_cCD INTERGENIC MAGEF1 chr3 184709077 chr3 184711099 INV MantaINV:11216:0:1:0:1:0 TRUTH 0 0 9 4148 3 184426865 3 184428887 0 9 UNEVALUABLE UNEVALUABLE
659_cCD TACC3 FGFR3 chr4 1738992 chr4 1806991 DUP MantaDUP:TANDEM:10:1507:1522:0:0:0 TRUTH 0 0 17 17546 4 1740719 4 1808718 0 17 UNEVALUABLE UNEVALUABLE
659_cCD ATP2B3 BCAP31 chrX 153559808 chrX 153711560 DUP MantaDUP:TANDEM:43243:0:1:0:1:0 TRUTH 0 0 1203 5 X 152825266 X 152977015 0 5 UNEVALUABLE UNEVALUABLE
659_cKj YIF1B SEZ6L chr19 38315736 chr22 26334298 BND MantaBND:8764:1:2:0:0:0:0 TRUTH 0 0 3299 0 19 38806376 22 26730264 0 0 UNEVALUABLE UNEVALUABLE
659_cKj HECA VTA1 chr6 139166683 chr6 142172737 INV MantaINV:20430:0:2:0:0:0 TRUTH 0 0 3006 2 6 139487820 6 142493874 0 2 UNEVALUABLE UNEVALUABLE
659_cKj AHNAK TAF6L chr11 62533934 chr11 62783322 DUP MantaDUP:TANDEM:29657:0:1:0:0:0 TRUTH 0 0 2324 515 11 62301406 11 62550794 0 515 EVALUABLE BAM_REFUTED
659_cKj ARSB INTERGENIC chr5 78985216 chr6 4600041 BND MantaBND:16280:0:2:0:0:0:1 TRUTH 0 0 1387 5 5 78281039 6 4600275 0 5 UNEVALUABLE UNEVALUABLE
659_cKj ARSB INTERGENIC chr5 78984957 chr6 5065893 BND MantaBND:16280:0:1:0:0:0:0 TRUTH 0 0 1388 211 5 78280780 6 5066127 0 211 EVALUABLE BAM_REFUTED
659_cKj INTERGENIC DOCK5 chr8 24544843 chr8 25399953 INV MantaINV:23352:0:1:0:0:0 TRUTH 0 0 2 359 8 24402356 8 25257469 0 2 UNEVALUABLE UNEVALUABLE
659_cKj JARID2 SCUBE3 chr6 15509082 chr6 35242707 DEL MantaDEL:17994:0:1:0:0:0 TRUTH 0 0 1229 1732 6 15509313 6 35210484 0 1229 EVALUABLE BAM_REFUTED
659_cKj DTNBP1 C17orf103 chr6 15523198 chr17 21241166 BND MantaBND:17995:0:1:0:0:0:1 TRUTH 0 0 1854 0 6 15523429 17 21144479 0 0 UNEVALUABLE UNEVALUABLE
659_cKj TMEM170B TDRD6 chr6 11552623 chr6 46693649 DUP MantaDUP:TANDEM:17817:0:2:1:0:0 TRUTH 0 0 0 2904 6 11552856 6 46661386 0 0 UNEVALUABLE UNEVALUABLE
659_cKj INTERGENIC EED chr11 86224056 chr11 86250383 DEL MantaDEL:30738:0:1:0:0:0 TRUTH 0 0 0 925 11 85935098 11 85961425 0 0 UNEVALUABLE UNEVALUABLE
659_cKj GDF5 INTERGENIC chr20 35437658 chr20 39189770 INV MantaINV:45882:0:1:0:0:0 TRUTH 0 0 1735 0 20 34025438 20 37818413 0 0 UNEVALUABLE UNEVALUABLE
659_cKj INTERGENIC ADCY4 chr6 168101850 chr14 24319388 BND MantaBND:20924:0:1:0:0:0:1 TRUTH 0 0 0 1815 6 168502530 14 24788594 0 0 UNEVALUABLE UNEVALUABLE
659_cKj RNF8 ANKRD66 chr6 37390747 chr6 46747102 DUP MantaDUP:TANDEM:18727:0:1:0:0:0 TRUTH 0 0 340 354 6 37358523 6 46714839 0 340 EVALUABLE BAM_REFUTED
659_cKj AL135998.1 EFS chr14 22820461 chr14 23360578 DUP MantaDUP:TANDEM:34956:0:1:0:1:0 TRUTH 0 0 16 3384 14 23289670 14 23829787 0 16 UNEVALUABLE UNEVALUABLE
659_cYX INTERGENIC EWSR1 chr9 99826259 chr22 29298564 BND MantaBND:18185:0:1:0:0:0:1 TRUTH 0 0 10192 5499 9 102588541 22 29694554 0 5499 EVALUABLE BAM_REFUTED
659_cvg MX1 TMPRSS2 chr21 41456135 chr21 41497844 INV MantaINV:8:4963:4975:0:0:0 TRUTH 0 0 14 11304 21 42828062 21 42869771 0 14 UNEVALUABLE UNEVALUABLE
659_cvg ELK4 TMPRSS2 chr1 205629972 chr21 41497664 BND MantaBND:8:4962:4963:0:0:0:1 TRUTH 0 0 4 10632 1 205599100 21 42869591 0 4 UNEVALUABLE UNEVALUABLE
659_cvg TRAK1 RPS24 chr3 42193843 chr10 78036306 BND MantaBND:10547:0:1:0:0:0:0 TRUTH 0 0 616 67 3 42235335 10 79796064 0 67 EVALUABLE BAM_REFUTED
659_dXQ RAF1 GOLGA4 chr3 12600504 chr3 37294007 INV MantaINV:7028:0:1:0:0:0 TRUTH 0 0 9627 1 3 12642003 3 37335498 0 1 UNEVALUABLE UNEVALUABLE
659_e5 ERG TMPRSS2 chr21 38559453 chr21 41496391 DEL MantaDEL:39304:0:1:0:0:0 TRUTH 0 0 4 8176 21 39931377 21 42868318 0 4 UNEVALUABLE UNEVALUABLE
659_eAi ERG EWSR1 chr21 38393177 chr22 29288368 BND MantaBND:39874:1:2:0:0:0:0 TRUTH 0 0 8 9265 21 39765099 22 29684357 0 8 UNEVALUABLE UNEVALUABLE
659_eGF NSL1 FGFR2 chr1 212783977 chr10 121483529 BND MantaBND:4440:0:1:0:0:0:1 TRUTH 0 0 299 6316 1 212957319 10 123243043 0 299 EVALUABLE BAM_REFUTED
659_eTs SNTG2 APOB chr2 1290259 chr2 21012139 INV MantaINV:7700:0:1:0:0:0 TRUTH 0 0 5 2757 2 1294031 2 21235011 0 5 UNEVALUABLE UNEVALUABLE
659_eTs MYT1L APOB chr2 2175850 chr2 21012241 DUP MantaDUP:TANDEM:7700:1:2:0:0:0 TRUTH 0 0 5 2462 2 2179622 2 21235113 0 5 UNEVALUABLE UNEVALUABLE
659_eTs PLCL2 UBE2E1 chr3 17010834 chr3 23837649 INV MantaINV:14578:0:1:0:0:0 TRUTH 0 0 1892 1 3 17052326 3 23879140 0 1 UNEVALUABLE UNEVALUABLE
659_eTs PLCL2 RARB chr3 17011104 chr3 25488905 INV MantaINV:14578:0:2:0:0:0 TRUTH 0 0 1926 2 3 17052596 3 25530396 0 2 UNEVALUABLE UNEVALUABLE
659_eTs IL17RD PDE12 chr3 57143858 chr3 57559988 DUP MantaDUP:TANDEM:16093:0:1:0:0:0 TRUTH 0 0 2 2107 3 57177886 3 57545715 0 2 UNEVALUABLE UNEVALUABLE
659_eTs RBPMS ATF4 chr8 30492930 chr22 39522377 BND MantaBND:33173:0:1:0:0:0:0 TRUTH 0 0 7 2669 8 30350447 22 39918382 0 7 UNEVALUABLE UNEVALUABLE
659_eTs INTERGENIC ATF4 chr12 48375746 chr22 39522370 BND MantaBND:33173:1:3:0:0:0:1 TRUTH 0 0 5 2695 12 48769529 22 39918375 0 5 UNEVALUABLE UNEVALUABLE
659_eTs ZSCAN10 NAA60 chr16 3091824 chr16 3477177 DEL MantaDEL:51075:0:1:0:0:0 TRUTH 0 0 2337 35 16 3141825 16 3527177 0 35 EVALUABLE BAM_REFUTED
659_eTs ETV4 DDX5 chr17 43539617 chr17 64503990 DEL MantaDEL:7:10263:10266:0:0:0 TRUTH 0 0 2 2173 17 41616985 17 62500108 0 2 UNEVALUABLE UNEVALUABLE
659_ekC INTERGENIC DDIT3 chr12 55680356 chr12 57518266 INV MantaINV:30283:0:2:0:0:0 TRUTH 0 0 2 6073 12 56074140 12 57912049 0 2 UNEVALUABLE UNEVALUABLE
659_ekC INTERGENIC EWSR1 chr12 55680368 chr22 29288137 BND MantaBND:30283:0:1:0:0:0:0 TRUTH 0 0 2 8996 12 56074152 22 29684126 0 2 UNEVALUABLE UNEVALUABLE
659_ekC DDIT3 EWSR1 chr12 57518280 chr22 29288184 BND MantaBND:30283:1:2:0:0:0:0 TRUTH 0 0 6056 8821 12 57912063 22 29684173 0 6056 EVALUABLE BAM_REFUTED
659_esc MUC4 INTERGENIC chr3 195764141 chr3 196620310 DUP MantaDUP:TANDEM:9577:0:1:0:1:0 TRUTH 0 0 1521 0 3 195491012 3 196347181 0 0 UNEVALUABLE UNEVALUABLE
659_esc PCDHB5 PCDHB10 chr5 141137296 chr5 141194417 DEL MantaDEL:0:6702:6703:0:0:0 TRUTH 0 0 17135 14183 5 140516878 5 140573990 0 14183 EVALUABLE BAM_REFUTED
659_esc PIP5KL1 SWI5 chr9 127927662 chr9 128283044 INV MantaINV:0:10983:10984:0:0:0 TRUTH 0 0 3728 19 9 130689941 9 131045323 0 19 UNEVALUABLE UNEVALUABLE
659_esc INTERGENIC MAP3K8 chr10 25815703 chr10 30450379 DEL MantaDEL:0:11460:11461:0:0:0 TRUTH 0 0 0 804 10 26104632 10 30739308 0 0 UNEVALUABLE UNEVALUABLE
659_esc FNDC8 UNC45B chr17 35127342 chr17 35164142 DUP MantaDUP:TANDEM:0:18376:18381:0:0:0 TRUTH 0 0 1565 1057 17 33454361 17 33491161 0 1057 EVALUABLE BAM_REFUTED
659_esc NLE1 SLFN5 chr17 35133347 chr17 35269086 INV MantaINV:0:18386:18387:0:1:0 TRUTH 0 0 1140 8 17 33460366 17 33596105 0 8 UNEVALUABLE UNEVALUABLE
659_esc SLFN5 SLFN11 chr17 35265868 chr17 35366568 DEL MantaDEL:30379:0:1:0:3:0 TRUTH 0 0 1977 0 17 33592887 17 33693587 0 0 UNEVALUABLE UNEVALUABLE
659_esc INTERGENIC ETS2 chr17 36019908 chr21 38806636 BND MantaBND:30387:0:1:0:0:0:1 TRUTH 0 0 20 2033 17 34346945 21 40178560 0 20 EVALUABLE BAM_REFUTED
659_esc INTERGENIC ETS2 chr17 36019917 chr21 38806641 BND MantaBND:30387:0:1:1:0:0:1 TRUTH 0 0 20 2022 17 34346954 21 40178565 0 20 EVALUABLE BAM_REFUTED
659_esc INTERGENIC ETS2 chr17 36021447 chr21 38806760 BND MantaBND:30387:1:2:0:0:0:1 TRUTH 0 0 4 1744 17 34348484 21 40178684 0 4 UNEVALUABLE UNEVALUABLE
659_esc ZNF540 SAMD4B chr19 37612158 chr19 39367848 INV MantaINV:0:21129:21130:0:0:0 TRUTH 0 0 2528 25 19 38103059 19 39858488 0 25 EVALUABLE BAM_REFUTED
659_zO KCNV1 PRR25 chr8 109964539 chr16 805733 BND MantaBND:26090:0:1:0:0:0:0 TRUTH 0 0 1 1970 8 110976768 16 855733 0 1 UNEVALUABLE UNEVALUABLE
659_zO INTERGENIC TPM1 chr15 60686998 chr15 63061198 DEL MantaDEL:39692:0:1:0:0:0 TRUTH 0 0 5 1180 15 60979197 15 63353397 0 5 UNEVALUABLE UNEVALUABLE
659_zO INTERGENIC DNAH9 chr17 10873768 chr17 11880075 DUP MantaDUP:TANDEM:43155:0:1:0:0:0 TRUTH 0 0 13 959 17 10777085 17 11783392 0 13 UNEVALUABLE UNEVALUABLE
659_b2G ZNF444 EWSR1 chr19 56159695 chr22 29288555 BND MantaBND:2:12276:12277:0:0:0:0 TRUTH 0 0 3537 9240 19 56671064 22 29684544 0 3537 EVALUABLE BAM_REFUTED
659_b2G ZNF444 EWSR1 chr19 56159773 chr22 29288541 BND MantaBND:2:12276:12277:1:0:0:1 TRUTH 0 0 3587 9129 19 56671142 22 29684530 0 3587 EVALUABLE BAM_REFUTED
659_bD1 SHE CPM chr1 154479928 chr12 68867106 BND MantaBND:4341:0:1:0:0:0:0 TRUTH 0 0 3163 577 1 154452404 12 69260886 0 577 EVALUABLE BAM_REFUTED
659_bD1 INTERGENIC GSX1 chr3 12310387 chr13 27792789 BND MantaBND:12999:0:1:0:1:0:1 TRUTH 0 0 5 1755 3 12351886 13 28366926 0 5 UNEVALUABLE UNEVALUABLE
659_bD1 ZNF518B INTERGENIC chr4 10445475 chr4 11469652 INV MantaINV:17394:0:1:0:0:0 TRUTH 0 0 3853 1 4 10447099 4 11471276 0 1 UNEVALUABLE UNEVALUABLE
659_bD1 PLAA INTERGENIC chr9 26935168 chr12 4118735 BND MantaBND:34097:0:1:0:0:0:0 TRUTH 0 0 578 0 9 26935166 12 4227901 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 RP11-160N1.10 MMP7 chr9 61659853 chr11 102530331 BND MantaBND:34331:0:1:0:0:0:0 TRUTH 0 0 3240 621 9 44867691 11 102401062 0 621 EVALUABLE BAM_REFUTED
659_bD1 ARHGAP42 CBLN1 chr11 100831094 chr16 49281257 BND MantaBND:9:5043:5045:0:0:0:0 TRUTH 0 0 0 2070 11 100701825 16 49315168 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 ERC1 ETV6 chr12 1169817 chr12 11878030 DUP MantaDUP:TANDEM:40504:0:1:0:0:0 TRUTH 0 0 2 10991 12 1278983 12 12030964 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 ATN1 INTERGENIC chr12 6941551 chr12 6942586 INV MantaINV:40889:0:1:0:0:0 TRUTH 12 0 1897 14 12 7050714 12 7051749 12 14 UNEVALUABLE UNEVALUABLE
659_bD1 ETV6 LRP6 chr12 11885544 chr12 12156104 DUP MantaDUP:TANDEM:38323:1:2:0:0:0 TRUTH 0 0 12577 371 12 12038478 12 12309038 0 371 EVALUABLE BAM_REFUTED
659_bD1 MMP19 INTERGENIC chr12 55837948 chr12 91022629 INV MantaINV:17815:0:1:0:0:0 TRUTH 0 0 1913 0 12 56231732 12 91416406 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 MMP19 SRGAP1 chr12 55838655 chr12 64080181 INV MantaINV:33953:0:1:0:0:0 TRUTH 0 0 1263 489 12 56232439 12 64473961 0 489 EVALUABLE BAM_REFUTED
659_bD1 LRP1 MGAT4C chr12 57177460 chr12 86013458 DUP MantaDUP:TANDEM:9:3785:3906:1:0:0 TRUTH 0 0 1894 385 12 57571243 12 86407236 0 385 EVALUABLE BAM_REFUTED
659_bD1 MBD6 INTERGENIC chr12 57528384 chr12 89000778 INV MantaINV:10184:1:3:1:0:0 TRUTH 0 0 4357 2 12 57922167 12 89394555 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 INTERGENIC TMEM121 chr12 59524859 chr14 105529142 BND MantaBND:12109:0:1:0:0:0:1 TRUTH 0 0 0 4282 12 59918640 14 105995479 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 INTERGENIC MYRFL chr12 65513265 chr12 69891079 INV MantaINV:9:3518:3696:0:0:0 TRUTH 0 0 0 685 12 65907045 12 70284859 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 CPM ANKS1B chr12 68893770 chr12 99806648 DEL MantaDEL:9:4013:4109:0:0:0 TRUTH 0 0 4 1470 12 69287550 12 100200426 0 4 UNEVALUABLE UNEVALUABLE
659_bD1 LYZ INTERGENIC chr12 69352249 chr12 91825029 DUP MantaDUP:TANDEM:36869:0:1:0:0:0 TRUTH 0 0 361 2 12 69746029 12 92218805 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 CNOT2 PPFIA2 chr12 70313065 chr12 81598255 INV MantaINV:31077:0:1:0:0:0 TRUTH 0 0 0 1550 12 70706845 12 81992034 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 INTERGENIC BRCA2 chr13 27060810 chr13 32348741 DEL MantaDEL:44165:0:1:0:0:0 TRUTH 0 0 2 5665 13 27634947 13 32922878 0 2 UNEVALUABLE UNEVALUABLE
659_bD1 BRCA2 FAM155A chr13 32328767 chr13 107473684 INV MantaINV:34538:1:2:0:0:0 TRUTH 0 0 6962 0 13 32902904 13 108126032 0 0 UNEVALUABLE UNEVALUABLE
659_bD1 INTS2 INTERGENIC chr17 61919454 chr17 62071045 INV MantaINV:52511:0:1:0:0:0 TRUTH 0 0 285 0 17 59996815 17 60148406 0 0 UNEVALUABLE UNEVALUABLE
659_bNj PAX3 FOXO1 chr2 222216181 chr13 40591282 BND MantaBND:7:1787:1788:0:0:0:0 TRUTH 0 0 12061 0 2 223080900 13 41165419 0 0 UNEVALUABLE UNEVALUABLE
659_bNj PAX3 FOXO1 chr2 222217195 chr13 40591206 BND MantaBND:7:1786:1788:0:0:0:1 TRUTH 0 0 9267 2 2 223081914 13 41165343 0 2 UNEVALUABLE UNEVALUABLE
659_bwh GABRD INTERGENIC chr1 2024985 chr1 2317280 INV MantaINV:35:0:1:0:0:0 TRUTH 0 0 1148 2 1 1956424 1 2248719 0 2 UNEVALUABLE UNEVALUABLE
659_bwh PAX7 MAGI3 chr1 18714451 chr1 113504767 INV MantaINV:3:554:556:0:1:0 TRUTH 0 0 10293 0 1 19040945 1 114047389 0 0 UNEVALUABLE UNEVALUABLE
659_bwh KCNIP4 INTERGENIC chr4 21697474 chr12 73044094 BND MantaBND:10080:0:1:0:0:0:1 TRUTH 0 0 862 0 4 21699097 12 73437874 0 0 UNEVALUABLE UNEVALUABLE
659_bwh INTERGENIC CIT chr5 7903117 chr12 119718246 BND MantaBND:11437:0:1:0:0:0:0 TRUTH 0 0 2 1691 5 7903230 12 120156051 0 2 UNEVALUABLE UNEVALUABLE
659_bwh CDH18 CIT chr5 20250217 chr12 119718383 BND MantaBND:11437:1:2:0:0:0:1 TRUTH 0 0 9 1964 5 20250326 12 120156188 0 9 UNEVALUABLE UNEVALUABLE
659_bwh CSRP2 CCDC64 chr12 76878567 chr12 120061824 DUP MantaDUP:TANDEM:11465:1:2:0:0:0 TRUTH 0 0 0 383 12 77272347 12 120499628 0 0 UNEVALUABLE UNEVALUABLE
659_c95 INTERGENIC DNAH10 chr3 133569087 chr12 123803760 BND MantaBND:9241:0:1:0:0:0:1 TRUTH 0 0 0 850 3 133287931 12 124288307 0 0 UNEVALUABLE UNEVALUABLE
659_c95 TRPC1 GLT1D1 chr3 142736465 chr12 128968957 BND MantaBND:9438:0:1:0:0:0:0 TRUTH 0 0 763 0 3 142455307 12 129453502 0 0 UNEVALUABLE UNEVALUABLE
659_c95 ZNF827 DYM chr4 145765084 chr18 49458573 BND MantaBND:11672:0:1:0:0:0:1 TRUTH 0 0 1986 0 4 146686236 18 46984943 0 0 UNEVALUABLE UNEVALUABLE
659_c95 NGFR CA10 chr17 49506510 chr17 52071021 INV MantaINV:1:3188:3193:0:0:0 TRUTH 0 0 2227 0 17 47583872 17 50148381 0 0 UNEVALUABLE UNEVALUABLE
659_c95 INTERGENIC SYT5 chr19 54675005 chr19 55175251 DUP MantaDUP:TANDEM:17714:1:2:0:0:0 TRUTH 0 0 3 2541 19 55186454 19 55686619 0 3 UNEVALUABLE UNEVALUABLE
659_c95 SUSD2 UPB1 chr22 24184862 chr22 24511230 DUP MantaDUP:TANDEM:37249:0:1:0:0:0 TRUTH 0 0 1717 679 22 24580830 22 24907198 0 679 EVALUABLE BAM_REFUTED
659_c95 MAPK11 PPP6R2 chr22 50265610 chr22 50358868 DUP MantaDUP:TANDEM:37769:0:1:0:0:0 TRUTH 0 0 1779 10 22 50704039 22 50797297 0 10 UNEVALUABLE UNEVALUABLE
659_ciZ RET NCOA4 chr10 43115037 chr10 46007689 DEL MantaDEL:4:6504:6505:0:0:0 TRUTH 0 0 15914 0 10 43610485 10 51588131 0 0 UNEVALUABLE UNEVALUABLE
659_ciZ RET NCOA4 chr10 43115040 chr10 46007687 DUP MantaDUP:TANDEM:4:6504:6505:1:3:0 TRUTH 0 0 15881 0 10 43610488 10 51588133 0 0 UNEVALUABLE UNEVALUABLE
659_dAn ZNF805 INTERGENIC chr19 57254013 chr19 57256518 DEL MantaDEL:80078:0:1:0:0:0 TRUTH 0 0 7101 0 19 57765381 19 57767886 0 0 UNEVALUABLE UNEVALUABLE
659_dAn INTERGENIC ACOX1 chr1 31710928 chr17 75953535 BND MantaBND:1821:0:1:0:0:0:0 TRUTH 0 0 6 891 1 32176529 17 73949616 0 6 UNEVALUABLE UNEVALUABLE
659_dAn DNAH11 STK31 chr7 21784803 chr7 23785491 DUP MantaDUP:TANDEM:42806:0:1:0:1:0 TRUTH 0 0 419 1008 7 21824421 7 23825110 0 419 EVALUABLE BAM_REFUTED
659_dAn INTERGENIC ESM1 chr5 54975293 chr5 54979371 DUP MantaDUP:TANDEM:33898:0:1:0:0:0 TRUTH 0 0 3 369 5 54271121 5 54275199 0 3 UNEVALUABLE UNEVALUABLE
659_dAn ST6GALNAC3 INTERGENIC chr1 76629778 chr1 76640537 DUP MantaDUP:TANDEM:3921:0:1:0:0:0 TRUTH 0 0 2389 0 1 77095463 1 77106222 0 0 UNEVALUABLE UNEVALUABLE
659_dAn GLB1 TMPPE chr3 33085693 chr3 33094080 DUP MantaDUP:TANDEM:22151:0:1:0:0:0 TRUTH 0 0 1 4179 3 33127185 3 33135572 0 1 UNEVALUABLE UNEVALUABLE
659_dAn ETV6 INTERGENIC chr12 11856340 chr12 11916366 DUP MantaDUP:TANDEM:62668:0:1:0:0:0 TRUTH 0 0 10823 20 12 12009274 12 12069300 0 20 EVALUABLE BAM_REFUTED
659_dAn TTC16 INTERGENIC chr9 127723265 chr22 34715945 BND MantaBND:54173:0:1:0:0:0:1 TRUTH 0 0 1111 2 9 130485544 22 35111936 0 2 UNEVALUABLE UNEVALUABLE
659_dAn INTERGENIC MTHFD2 chr2 74197765 chr2 74198673 DUP MantaDUP:TANDEM:14088:0:1:0:0:0 TRUTH 0 0 2 540 2 74424892 2 74425800 0 2 UNEVALUABLE UNEVALUABLE
659_dAn WDR7 INTERGENIC chr18 56695114 chr18 57589065 INV MantaINV:77215:0:1:0:0:0 TRUTH 0 0 2212 3 18 54362345 18 55256297 0 3 UNEVALUABLE UNEVALUABLE
659_dAn MED26 SMIM7 chr19 16577296 chr19 16645833 DUP MantaDUP:TANDEM:78500:0:1:0:0:0 TRUTH 0 0 3925 7 19 16688107 19 16756644 0 7 UNEVALUABLE UNEVALUABLE
659_dAn INTERGENIC DEPDC1B chr5 55605475 chr5 60597829 INV MantaINV:33903:0:1:0:0:0 TRUTH 0 0 35 804 5 54901303 5 59893656 0 35 EVALUABLE BAM_REFUTED
659_dAn INTERGENIC TBK1 chr2 152821176 chr12 64460270 BND MantaBND:17021:0:1:0:0:0:1 TRUTH 0 0 9 462 2 153677690 12 64854050 0 9 UNEVALUABLE UNEVALUABLE
659_dAn FAT3 INTERGENIC chr11 92890595 chr12 20799482 BND MantaBND:60592:0:1:0:0:0:0 TRUTH 0 0 3051 2 11 92623761 12 20952416 0 2 UNEVALUABLE UNEVALUABLE
659_dAn FAM19A2 BPTF chr12 61907291 chr17 67924553 BND MantaBND:64105:0:1:0:0:0:1 TRUTH 0 0 1 539 12 62301072 17 65920669 0 1 UNEVALUABLE UNEVALUABLE
659_dAn ASXL1 INTERGENIC chr20 32437219 chr20 32610029 DUP MantaDUP:TANDEM:65321:1:2:0:0:0 TRUTH 0 0 7708 3 20 31025022 20 31197831 0 3 UNEVALUABLE UNEVALUABLE
659_cl5 INTERGENIC IFNA21 chr9 20330620 chr9 21166153 INV MantaINV:29803:0:2:0:0:0 TRUTH 0 0 2 6113 9 20330618 9 21166152 0 2 UNEVALUABLE UNEVALUABLE
659_cl5 ERG TMPRSS2 chr21 38501079 chr21 41500152 DEL MantaDEL:1:6579:6580:0:1:0 TRUTH 0 0 10 13613 21 39873003 21 42872079 0 10 UNEVALUABLE UNEVALUABLE
659_dNh ASPSCR1 TFE3 chr17 82005040 chrX 49034442 BND MantaBND:39885:0:1:0:0:0:1 TRUTH 0 0 1 7471 17 79962916 X 48891956 0 1 UNEVALUABLE UNEVALUABLE
659_dNh ASPSCR1 TFE3 chr17 82005042 chrX 49034443 BND MantaBND:39885:0:1:1:0:0:1 TRUTH 0 0 1 7479 17 79962918 X 48891957 0 1 UNEVALUABLE UNEVALUABLE
659_dPb INTERGENIC EWSR1 chr9 99824104 chr22 29296445 BND MantaBND:1:10110:10143:0:0:0:0 TRUTH 0 0 5 11923 9 102586386 22 29692435 0 5 UNEVALUABLE UNEVALUABLE
659_dPb INTERGENIC EWSR1 chr17 73723194 chr22 29296493 BND MantaBND:1:10110:10144:0:0:0:0 TRUTH 0 0 2 11929 17 71719333 22 29692483 0 2 UNEVALUABLE UNEVALUABLE
659_dPb SYPL1 CPNE6 chr7 106101558 chr14 24071449 BND MantaBND:1:9:4505:1:0:0:1 TRUTH 0 8 420 1347 7 105742004 14 24540658 8 420 EVALUABLE BAM_CONFIRMED
659_dyZ MBNL1 BRAF chr3 152282582 chr7 140798156 BND MantaBND:1:8656:8657:0:0:0:0 TRUTH 0 0 1 5109 3 152000371 7 140497956 0 1 UNEVALUABLE UNEVALUABLE
659_dyZ ERBB2IP ARHGEF1 chr5 65992127 chr19 41907176 BND MantaBND:16743:0:1:0:0:0:1 TRUTH 0 0 48 2439 5 65287955 19 42411328 0 48 EVALUABLE BAM_REFUTED
659_e2p INTERGENIC POLR3D chr3 49881998 chr8 22250491 BND MantaBND:7374:0:1:0:0:0:1 TRUTH 0 0 0 1104 3 49919431 8 22108004 0 0 UNEVALUABLE UNEVALUABLE
659_e2p TACC3 FGFR3 chr4 1743800 chr4 1807784 DUP MantaDUP:TANDEM:9060:0:1:0:0:0 TRUTH 0 0 21 13019 4 1745527 4 1809511 0 21 EVALUABLE BAM_REFUTED
659_e2p INTERGENIC ACHE chr7 28959039 chr7 100893680 DUP MantaDUP:TANDEM:14644:0:1:0:0:0 TRUTH 0 0 3 4899 7 28998655 7 100491301 0 3 UNEVALUABLE UNEVALUABLE
659_eEE INTERGENIC RNF41 chr2 181948584 chr12 56207261 BND MantaBND:50331:0:1:0:0:0:1 TRUTH 0 0 2 933 2 182813311 12 56601045 0 2 UNEVALUABLE UNEVALUABLE
659_eEE RB1CC1 PARPBP chr8 52671080 chr12 102196198 BND MantaBND:125640:0:1:0:0:0:1 TRUTH 0 0 0 806 8 53583640 12 102589976 0 0 UNEVALUABLE UNEVALUABLE
659_eEE INTERGENIC FAM133A chrX 46183151 chrX 93710112 INV MantaINV:55025:1:4:0:0:0 TRUTH 0 0 0 940 X 46042586 X 92965111 0 0 UNEVALUABLE UNEVALUABLE
659_eEE LMBRD2 C5orf42 chr5 36122910 chr5 37147411 DEL MantaDEL:89832:0:1:0:0:0 TRUTH 0 0 394 1 5 36123012 5 37147513 0 1 UNEVALUABLE UNEVALUABLE
659_eEE NPAS3 DECR2 chr14 33444210 chr16 402982 BND MantaBND:169943:0:1:0:0:0:0 TRUTH 0 0 1 276 14 33913416 16 452982 0 1 UNEVALUABLE UNEVALUABLE
659_eEE SEMA3A SLTM chr7 84143873 chr15 58893890 BND MantaBND:13:20506:20507:0:0:0:1 TRUTH 0 0 12 839 7 83773189 15 59186089 0 12 UNEVALUABLE UNEVALUABLE
659_eEE INTERGENIC RAD17 chr1 150540217 chr5 69391830 BND MantaBND:17868:0:1:0:0:0:0 TRUTH 0 0 17 594 1 150512693 5 68687657 0 17 UNEVALUABLE UNEVALUABLE
659_eEE ZNF827 INTERGENIC chr4 145885687 chr5 50872806 BND MantaBND:84918:0:1:0:8:0:1 TRUTH 0 0 2840 0 4 146806839 5 50168640 0 0 UNEVALUABLE UNEVALUABLE
659_eEE CCDC173 INTERGENIC chr2 169674622 chr12 21616444 BND MantaBND:38194:1:3:0:0:0:0 TRUTH 0 0 1133 8 2 170531132 12 21769378 0 8 UNEVALUABLE UNEVALUABLE
659_eEE NETO2 LONP2 chr16 47086231 chr16 48297652 INV MantaINV:181821:0:1:0:0:0 TRUTH 0 0 213 4 16 47120142 16 48331563 0 4 UNEVALUABLE UNEVALUABLE
659_eEE BRCA2 INTERGENIC chr13 32355983 chr21 22072552 BND MantaBND:12019:0:1:0:0:0:1 TRUTH 0 0 2290 2 13 32930120 21 23444871 0 2 UNEVALUABLE UNEVALUABLE
659_eEE LPP CPEB1 chr3 188600327 chr15 82553557 BND MantaBND:74016:0:1:0:0:0:0 TRUTH 0 0 1 516 3 188318115 15 83222307 0 1 UNEVALUABLE UNEVALUABLE
659_eEE COL9A1 INTERGENIC chr6 70234557 chr21 32223005 BND MantaBND:83805:1:2:0:0:0:1 TRUTH 0 0 1222 0 6 70944260 21 33595317 0 0 UNEVALUABLE UNEVALUABLE
659_eEE INTERGENIC WDR63 chr1 13519420 chr1 85108099 INV MantaINV:2453:0:1:0:0:0 TRUTH 0 0 1 707 1 13845915 1 85573782 0 1 UNEVALUABLE UNEVALUABLE
659_eEE INTERGENIC AKAP6 chr4 30563314 chr14 32823521 BND MantaBND:77525:0:1:0:0:0:0 TRUTH 0 0 0 2881 4 30564936 14 33292727 0 0 UNEVALUABLE UNEVALUABLE
659_eEE SLC35D1 MND1 chr1 67050451 chr4 153402163 BND MantaBND:11559:0:1:0:0:0:1 TRUTH 0 0 335 0 1 67516134 4 154323315 0 0 UNEVALUABLE UNEVALUABLE
659_eEE INTERGENIC TRAPPC8 chr4 104333856 chr18 31855761 BND MantaBND:53701:1:3:0:0:0:0 TRUTH 0 0 0 699 4 105255013 18 29435724 0 0 UNEVALUABLE UNEVALUABLE
659_eEE CHD1 INTERGENIC chr5 98896378 chr15 26216510 BND MantaBND:93849:0:1:0:0:0:1 TRUTH 0 0 567 2 5 98232082 15 26461657 0 2 UNEVALUABLE UNEVALUABLE
659_eOZ MEGF6 WRAP73 chr1 3531348 chr1 3638528 DEL MantaDEL:119:0:1:0:0:0 TRUTH 0 0 2036 549 1 3447912 1 3555092 0 549 EVALUABLE BAM_REFUTED
659_eOZ RLF ZMPSTE24 chr1 40240136 chr1 40258386 INV MantaINV:2292:0:1:0:0:0 TRUTH 0 0 1854 1436 1 40705808 1 40724058 0 1436 EVALUABLE BAM_REFUTED
659_eOZ POLR1C XPO5 chr6 43520460 chr6 43527699 DUP MantaDUP:TANDEM:43495:0:1:0:0:0 TRUTH 0 0 1958 1020 6 43488198 6 43495437 0 1020 EVALUABLE BAM_REFUTED
659_eOZ ZNF503 INTERGENIC chr10 75398906 chr10 75478759 DEL MantaDEL:53341:1:2:0:0:0 TRUTH 0 0 3566 12 10 77158664 10 77238517 0 12 UNEVALUABLE UNEVALUABLE
659_eOZ INTERGENIC BRCA1 chr12 46698402 chr17 43092666 BND MantaBND:70580:1:2:0:0:0:0 TRUTH 0 0 4 5600 12 47092185 17 41244683 0 4 UNEVALUABLE UNEVALUABLE
659_eOZ INTERGENIC C16orf62 chr16 19555078 chr16 19555588 DEL MantaDEL:81088:0:0:0:0:0 TRUTH 531 0 876 1770 16 19566400 16 19566910 531 876 EVALUABLE BAM_CONFIRMED
659_eOZ BRCA1 DCC chr17 43092659 chr18 52905071 BND MantaBND:70580:1:3:0:0:0:1 TRUTH 0 0 5597 2 17 41244676 18 50431441 0 2 UNEVALUABLE UNEVALUABLE
659_eOZ TMC2 IDH3B chr20 2603783 chr20 2660499 DUP MantaDUP:TANDEM:91200:0:1:0:0:0 TRUTH 0 0 5 2345 20 2584429 20 2641145 0 5 UNEVALUABLE UNEVALUABLE
659_ecd SYF2 C1orf63 chr1 25230320 chr1 25246468 DUP MantaDUP:TANDEM:1125:0:1:0:0:0 TRUTH 0 0 6 2617 1 25556811 1 25572959 0 6 UNEVALUABLE UNEVALUABLE
659_ecd ANKRD35 CRNN chr1 145874176 chr1 152410651 DUP MantaDUP:TANDEM:12:411:412:0:0:0 TRUTH 0 0 1990 3257 1 145560903 1 152383127 0 1990 EVALUABLE BAM_REFUTED
659_ecd ANP32E ZNF148 chr1 150230605 chr3 125279012 BND MantaBND:3197:0:1:0:0:0:0 TRUTH 0 0 620 639 1 150202940 3 124997856 0 620 EVALUABLE BAM_REFUTED
659_ecd TARS2 KIF21B chr1 150488002 chr1 201002606 DUP MantaDUP:TANDEM:3245:0:1:0:0:0 TRUTH 0 0 1720 593 1 150460478 1 200971734 0 593 EVALUABLE BAM_REFUTED
659_ecd ANXA9 INTERGENIC chr1 150988103 chr1 199818724 DEL MantaDEL:3326:0:1:0:0:0 TRUTH 0 0 1548 0 1 150960579 1 199787852 0 0 UNEVALUABLE UNEVALUABLE
659_ecd INTERGENIC SLC12A8 chr2 91572484 chr3 125107526 BND MantaBND:6660:0:1:0:0:0:1 TRUTH 0 0 71 2025 2 91760543 3 124826370 0 71 EVALUABLE BAM_REFUTED
659_ecd TNKS2 APOBEC3B chr10 91855086 chr22 38986500 BND MantaBND:25449:0:1:0:0:0:1 TRUTH 0 0 370 2404 10 93614843 22 39382505 0 370 EVALUABLE BAM_REFUTED
659_yG PTCH2 INTERGENIC chr1 44842068 chr1 44843427 DEL MantaDEL:2927:0:1:0:1:0 TRUTH 6 0 837 3416 1 45307740 1 45309099 6 837 EVALUABLE BAM_CONFIRMED
659_yG INTERGENIC MAP3K9 chr4 97241161 chr14 70733154 BND MantaBND:32300:0:1:0:0:0:0 TRUTH 0 0 3 2233 4 98162312 14 71199871 0 3 UNEVALUABLE UNEVALUABLE
659_yG ETV6 NTRK3 chr12 11877162 chr15 87974000 BND MantaBND:11:9445:9449:0:0:0:0 TRUTH 0 0 10408 1 12 12030096 15 88517231 0 1 UNEVALUABLE UNEVALUABLE
1173_CRL ANKRD52 CS chr12 56252053 chr12 56274850 DUP MantaDUP:TANDEM:35099:0:1:0:0:0 TRUTH 0 0 1940 1287 12 56645837 12 56668634 0 1287 EVALUABLE BAM_REFUTED
1173_CRL GNAL CHMP1B chr18 11850657 chr18 11851714 DEL MantaDEL:35026:0:1:0:0:0 TRUTH 0 0 0 3340 18 11850656 18 11851713 0 0 UNEVALUABLE UNEVALUABLE
1173_SK8 IQGAP1 FURIN chr15 90438867 chr15 90879939 INV MantaINV:22:3323:3324:0:0:0 TRUTH 0 0 251 2372 15 90982099 15 91423169 0 251 EVALUABLE BAM_REFUTED
659_bu4 MNDA PARD3B chr1 158843979 chr2 205446181 BND MantaBND:4576:0:1:0:0:0:1 TRUTH 0 0 1262 0 1 158813769 2 206310905 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 KANSL3 ANO4 chr2 96611134 chr12 101108187 BND MantaBND:7894:0:1:0:0:0:1 TRUTH 0 0 1141 2 2 97276871 12 101501965 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 TBC1D8 COL5A2 chr2 101082528 chr2 189043259 DUP MantaDUP:TANDEM:8007:0:1:0:0:0 TRUTH 0 0 2 841 2 101698990 2 189907985 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 ZRANB3 SRRM2 chr2 135213580 chr16 2760452 BND MantaBND:8734:0:1:0:0:0:1 TRUTH 0 0 0 1213 2 135971150 16 2810453 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 INTERGENIC SPAG9 chr2 192719883 chr17 51006174 BND MantaBND:9696:0:1:0:0:0:1 TRUTH 0 0 2 788 2 193584609 17 49083535 0 2 UNEVALUABLE UNEVALUABLE
659_bu4 INTERGENIC RASEF chr2 208889022 chr9 83062493 BND MantaBND:9988:0:1:0:0:0:1 TRUTH 0 0 1 2263 2 209753746 9 85677408 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 GAK INTERGENIC chr4 870872 chr10 84154380 BND MantaBND:14456:0:1:0:0:0:1 TRUTH 0 0 824 20 4 864660 10 85914136 0 20 EVALUABLE BAM_REFUTED
659_bu4 HTRA3 LDB2 chr4 8296126 chr4 16828380 DEL MantaDEL:14937:0:1:0:0:0 TRUTH 0 0 2357 0 4 8297853 4 16830003 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 GGCT MDM2 chr7 30498920 chr12 68819179 BND MantaBND:24312:0:1:0:0:0:0 TRUTH 0 0 608 20 7 30538536 12 69212959 0 20 EVALUABLE BAM_REFUTED
659_bu4 LZTS1 INTERGENIC chr8 20303748 chrX 69148949 BND MantaBND:27129:0:1:0:0:0:1 TRUTH 0 0 1246 11 8 20161259 X 68368792 0 11 UNEVALUABLE UNEVALUABLE
659_bu4 ATAD1 PTPRS chr10 87776329 chr19 5274815 BND MantaBND:32531:0:1:0:0:0:0 TRUTH 0 0 443 526 10 89536086 19 5274826 0 443 EVALUABLE BAM_REFUTED
659_bu4 OR51L1 TSPAN8 chr11 4999194 chr12 71160099 BND MantaBND:33688:0:1:0:0:0:0 TRUTH 0 0 2361 0 11 5020424 12 71553879 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 NINJ2 PIP5K1C chr12 663405 chr19 3657135 BND MantaBND:36351:0:1:0:0:0:0 TRUTH 0 0 838 107 12 772571 19 3657133 0 107 EVALUABLE BAM_REFUTED
659_bu4 INTERGENIC RP11-293I14.2 chr12 52873083 chr12 71697475 DUP MantaDUP:TANDEM:2:10956:10957:0:0:0 TRUTH 0 0 1 1819 12 53266867 12 72091255 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 KRT8 RP11-293I14.2 chr12 52899899 chr12 71697755 INV MantaINV:2:10954:10956:0:0:0 TRUTH 0 0 1243 1755 12 53293683 12 72091535 0 1243 EVALUABLE BAM_REFUTED
659_bu4 INTERGENIC GLIPR1L2 chr12 71809174 chr12 75410645 DUP MantaDUP:TANDEM:2:11444:11445:0:0:0 TRUTH 0 0 0 2522 12 72202954 12 75804425 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 INTERGENIC FBXO34 chr12 71809375 chr14 55351831 BND MantaBND:2:11445:11446:0:0:0:1 TRUTH 0 0 0 4087 12 72203155 14 55818549 0 0 UNEVALUABLE UNEVALUABLE
659_bu4 TBC1D15 NR2C1 chr12 71849766 chr12 95040538 INV MantaINV:38069:0:1:0:0:0 TRUTH 0 0 287 630 12 72243546 12 95434314 0 287 EVALUABLE BAM_REFUTED
659_bu4 INTERGENIC NR2C1 chr12 80679815 chr12 95030495 INV MantaINV:2:11193:11451:0:0:0 TRUTH 0 0 1 1070 12 81073594 12 95424271 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 MYF5 INTERGENIC chr12 80717104 chr12 100182368 INV MantaINV:31673:1:2:0:0:0 TRUTH 0 0 2668 1 12 81110883 12 100576146 0 1 UNEVALUABLE UNEVALUABLE
659_bu4 DNAH10 CHAF1A chr12 123785850 chr19 4414841 BND MantaBND:39237:0:1:0:0:0:1 TRUTH 0 0 1203 2 12 124270397 19 4414838 0 2 UNEVALUABLE UNEVALUABLE
659_c6S INTERGENIC CAMSAP1 chr9 103885160 chr9 135818452 INV MantaINV:25133:0:1:0:0:0 TRUTH 0 0 1 2651 9 106647441 9 138710298 0 1 UNEVALUABLE UNEVALUABLE
659_c6S KCNT1 CAMSAP1 chr9 135775978 chr9 135822223 DUP MantaDUP:TANDEM:25639:0:1:0:0:0 TRUTH 0 0 151 5533 9 138667824 9 138714069 0 151 EVALUABLE BAM_REFUTED
659_c6S MYRFL TMTC2 chr12 69910839 chr12 82838835 INV MantaINV:31296:0:1:0:0:0 TRUTH 0 0 486 1 12 70304619 12 83232614 0 1 UNEVALUABLE UNEVALUABLE
659_c6S ZC3H12A INTERGENIC chr1 37479096 chr18 6603883 BND MantaBND:1315:0:1:0:0:0:1 TRUTH 0 0 4870 2 1 37944697 18 6603882 0 2 UNEVALUABLE UNEVALUABLE
659_c6S INTERGENIC ZMYM6 chr1 15399292 chr1 34992280 DUP MantaDUP:TANDEM:470:0:1:0:0:0 TRUTH 0 0 11 1252 1 15725788 1 35457881 0 11 UNEVALUABLE UNEVALUABLE
659_c6S INTERGENIC RCN2 chr12 86331072 chr15 76932424 BND MantaBND:31432:0:1:0:0:0:1 TRUTH 0 0 0 1263 12 86724850 15 77224765 0 0 UNEVALUABLE UNEVALUABLE
659_c6S INTERGENIC TAS2R20 chr1 148309264 chr12 10996973 BND MantaBND:2639:0:1:0:0:0:0 TRUTH 0 0 1 3116 1 147781372 12 11149572 0 1 UNEVALUABLE UNEVALUABLE
659_c6S INTERGENIC CLPB chr1 29866660 chr11 72380325 BND MantaBND:942:0:1:0:0:0:1 TRUTH 0 0 0 517 1 30339507 11 72091369 0 0 UNEVALUABLE UNEVALUABLE
659_c6S INTERGENIC CAMSAP1 chr9 105930337 chr9 135822613 DEL MantaDEL:3407:1:2:0:0:0 TRUTH 0 0 1 5391 9 108692618 9 138714459 0 1 UNEVALUABLE UNEVALUABLE
659_c6S AGO1 INTERGENIC chr1 35893805 chr11 68253954 BND MantaBND:1290:0:2:0:0:0:0 TRUTH 0 0 2895 6 1 36359406 11 68021422 0 6 UNEVALUABLE UNEVALUABLE
659_c6S NUP210L NTRK1 chr1 154114983 chr1 156875595 DEL MantaDEL:1:1030:1035:0:3:0 TRUTH 0 0 0 15711 1 154087459 1 156845387 0 0 UNEVALUABLE UNEVALUABLE
659_drc INTERGENIC SGK223 chr1 35120082 chr8 8328160 BND MantaBND:7512:0:1:0:1:0:0 TRUTH 0 0 0 3270 1 35585683 8 8185676 0 0 UNEVALUABLE UNEVALUABLE
659_drc CYP4Z1 C20orf85 chr1 47099091 chr20 58160835 BND MantaBND:0:38861:38867:0:0:0:0 TRUTH 0 0 904 944 1 47564763 20 56735891 0 904 EVALUABLE BAM_REFUTED
659_drc EGLN1 TSG101 chr1 231396199 chr11 18481656 BND MantaBND:35475:0:1:0:0:0:0 TRUTH 0 0 30 2076 1 231531945 11 18503203 0 30 EVALUABLE BAM_REFUTED
659_drc INTERGENIC C2orf48 chr2 9777357 chr2 10210519 DEL MantaDEL:38679:0:1:0:0:0 TRUTH 0 0 2 954 2 9917486 2 10350645 0 2 UNEVALUABLE UNEVALUABLE
659_drc INTERGENIC HIST1H2BF chr2 61889351 chr6 26199767 BND MantaBND:47048:0:1:0:0:0:1 TRUTH 0 0 13 4655 2 62116486 6 26199995 0 13 UNEVALUABLE UNEVALUABLE
659_drc INTERGENIC HERC2 chr2 241584083 chr15 28229503 BND MantaBND:71180:0:1:0:0:0:0 TRUTH 0 0 278 4261 2 242523498 15 28474649 0 278 EVALUABLE BAM_REFUTED
659_drc THUMPD3 INTERGENIC chr3 9371053 chr3 14523032 INV MantaINV:6863:4:25:0:0:0 TRUTH 0 0 1328 450 3 9412737 3 14564539 0 450 EVALUABLE BAM_REFUTED
659_drc INTERGENIC XPC chr3 11917312 chr3 14156365 INV MantaINV:29306:2:3:0:0:0 TRUTH 0 0 0 1382 3 11958786 3 14197865 0 0 UNEVALUABLE UNEVALUABLE
659_drc NUP210 XPC chr3 13356141 chr3 14158058 INV MantaINV:0:3761:3764:0:0:0 TRUTH 0 0 13 3734 3 13397641 3 14199558 0 13 UNEVALUABLE UNEVALUABLE
659_drc INTERGENIC TRIM10 chr4 70699495 chr6 30160643 BND MantaBND:94575:1:3:0:0:0:0 TRUTH 0 0 12 2145 4 71565212 6 30128420 0 12 UNEVALUABLE UNEVALUABLE
659_drc ANKRD50 TPK1 chr4 124670863 chr7 144620806 BND MantaBND:105900:0:1:0:0:0:0 TRUTH 0 0 4297 0 4 125592018 7 144317899 0 0 UNEVALUABLE UNEVALUABLE
659_drc FAM149A ZIC3 chr4 186171776 chrX 137567366 BND MantaBND:65742:1:2:0:0:0:0 TRUTH 0 0 390 5702 4 187092930 X 136649525 0 390 EVALUABLE BAM_REFUTED
659_drc INTERGENIC NUP98 chr5 59959994 chr11 3738012 BND MantaBND:10829:3:13:0:0:0:0 TRUTH 0 0 0 7243 5 59255821 11 3759242 0 0 UNEVALUABLE UNEVALUABLE
659_drc DNAH8 INTERGENIC chr6 38938009 chr6 39293460 INV MantaINV:12597:1:4:0:0:0 TRUTH 0 0 1184 0 6 38905785 6 39261236 0 0 UNEVALUABLE UNEVALUABLE
659_drc MICAL1 FHOD3 chr6 109446308 chr18 36744910 BND MantaBND:0:9448:9449:0:0:0:1 TRUTH 0 0 2721 17 6 109767511 18 34324873 0 17 UNEVALUABLE UNEVALUABLE
659_drc REV3L INTERGENIC chr6 111374282 chr12 111390207 BND MantaBND:137160:0:1:0:1:0:1 TRUTH 0 0 2568 1 6 111695485 12 111828011 0 1 UNEVALUABLE UNEVALUABLE
659_drc INTERGENIC CAPNS1 chr7 98754991 chr19 36141097 BND MantaBND:0:1517:12047:2:0:0:0 TRUTH 4 4 99 2584 7 98384324 19 36631999 8 99 EVALUABLE BAM_CONFIRMED
659_drc LETM2 ANK1 chr8 38407423 chr8 41686353 DEL MantaDEL:157523:1:2:0:0:0 TRUTH 0 0 642 975 8 38264941 8 41543871 0 642 EVALUABLE BAM_REFUTED
659_drc CTNNA3 ARHGAP20 chr10 66971885 chr11 110577543 BND MantaBND:178727:0:1:0:1:0:0 TRUTH 0 0 0 2786 10 68731643 11 110448267 0 0 UNEVALUABLE UNEVALUABLE
659_drc RDH12 INTERGENIC chr14 67727098 chr14 69252451 DUP MantaDUP:TANDEM:167698:1:2:0:0:0 TRUTH 0 0 738 1 14 68193815 14 69719168 0 1 UNEVALUABLE UNEVALUABLE
659_drc TRPM7 SYNM chr15 50650792 chr15 99132342 INV MantaINV:0:25001:25009:0:0:0 TRUTH 0 0 8 5400 15 50942989 15 99672547 0 8 UNEVALUABLE UNEVALUABLE
659_drc SH2D7 AR chr15 78101132 chrX 67695698 BND MantaBND:0:42754:42757:0:2:0:0 TRUTH 0 0 3102 9644 15 78393474 X 66915540 0 3102 EVALUABLE BAM_REFUTED
659_drc FBXO47 INTERGENIC chr17 38962982 chr17 39579493 DEL MantaDEL:55783:0:1:0:0:0 TRUTH 0 0 445 0 17 37119235 17 37735746 0 0 UNEVALUABLE UNEVALUABLE
659_drc SBNO2 APC2 chr19 1113046 chr19 1465396 DUP MantaDUP:TANDEM:164543:0:1:0:0:0 TRUTH 0 0 1760 3917 19 1113045 19 1465395 0 1760 EVALUABLE BAM_REFUTED
659_drc FAM209A FAM209B chr20 56524983 chr20 56533464 DEL MantaDEL:0:38606:38726:0:0:0 TRUTH 5 0 2218 1950 20 55100039 20 55108520 5 1950 EVALUABLE BAM_CONFIRMED
659_dts DBF4 MED19 chr7 87907190 chr11 57708723 BND MantaBND:6:4356:4357:0:0:0:1 TRUTH 0 0 1972 4 7 87536505 11 57476195 0 4 UNEVALUABLE UNEVALUABLE
659_dts KIF5B RET chr10 32026934 chr10 43116575 INV MantaINV:6:5728:5729:0:0:0 TRUTH 0 0 2 12360 10 32315862 10 43612023 0 2 UNEVALUABLE UNEVALUABLE
659_e6H CTNNA3 FGFR2 chr10 66232077 chr10 121481050 DEL MantaDEL:52672:0:1:0:0:0 TRUTH 0 0 0 11402 10 67991835 10 123240564 0 0 UNEVALUABLE UNEVALUABLE
659_e6H CTRB2 CFDP1 chr16 75204291 chr16 75298362 DEL MantaDEL:72947:0:1:0:0:0 TRUTH 0 0 1695 0 16 75238189 16 75332260 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 INTERGENIC DMXL2 chr1 248944979 chr15 51499730 BND MantaBND:6426:0:1:0:0:0:0 TRUTH 0 0 0 3458 1 249239178 15 51791927 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 CPNE4 BAIAP2L1 chr3 131898463 chr7 98317251 BND MantaBND:13502:0:1:0:0:0:0 TRUTH 0 0 3 783 3 131617307 7 97946563 0 3 UNEVALUABLE UNEVALUABLE
659_eZ3 TTYH3 SDK1 chr7 2647488 chr7 4093426 INV MantaINV:23145:0:1:0:0:0 TRUTH 0 0 2595 0 7 2687122 7 4133058 0 0 UNEVALUABLE UNEVALUABLE
659_eZ3 INTERGENIC ETV1 chr7 11165770 chr7 13989916 INV MantaINV:23336:0:1:0:1:0 TRUTH 0 0 1 10735 7 11205397 7 14029541 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 INTERGENIC TMEM194A chr12 51528262 chr12 57072792 INV MantaINV:35296:0:1:0:0:0 TRUTH 0 0 2 646 12 51922046 12 57466575 0 2 UNEVALUABLE UNEVALUABLE
659_eZ3 RPS6KA5 DDX24 chr14 90989469 chr14 94051363 INV MantaINV:39372:0:1:0:0:0 TRUTH 0 0 1 1788 14 91455813 14 94517709 0 1 UNEVALUABLE UNEVALUABLE
659_eZ3 CCDC88C RIN3 chr14 91283422 chr14 92544673 DUP MantaDUP:TANDEM:39477:0:1:0:0:0 TRUTH 0 0 964 11 14 91749766 14 93011018 0 11 UNEVALUABLE UNEVALUABLE
659_eZ3 SYTL4 MID2 chrX 100693889 chrX 107854642 INV MantaINV:52664:0:1:0:0:0 TRUTH 0 0 2 328 X 99948886 X 107097872 0 2 UNEVALUABLE UNEVALUABLE
659_eeB LRP1B INTERGENIC chr2 140492668 chr2 146721833 DEL MantaDEL:8915:0:1:0:0:0 TRUTH 0 0 1130 0 2 141250237 2 147479401 0 0 UNEVALUABLE UNEVALUABLE
659_eeB NEB PLCL1 chr2 151677624 chr2 197963181 INV MantaINV:9042:0:1:0:0:0 TRUTH 0 0 2370 0 2 152534138 2 198827905 0 0 UNEVALUABLE UNEVALUABLE
659_eeB INTERGENIC AASS chr7 118033090 chr7 122079115 INV MantaINV:23309:0:1:0:0:0 TRUTH 0 0 0 1972 7 117673144 7 121719169 0 0 UNEVALUABLE UNEVALUABLE
659_eeB LPAR6 GPC6 chr13 48411783 chr13 93992475 DEL MantaDEL:35287:0:1:0:0:0 TRUTH 0 0 2262 0 13 48985919 13 94644729 0 0 UNEVALUABLE UNEVALUABLE
659_eeB INTERGENIC SPACA7 chr13 110952850 chr13 112398052 INV MantaINV:35854:0:1:0:0:0 TRUTH 0 0 191 431 13 111605197 13 113052366 0 191 EVALUABLE BAM_REFUTED
659_eeB UNC13C ADAD2 chr15 54147632 chr16 84196002 BND MantaBND:38184:0:1:0:0:0:1 TRUTH 0 0 19 6320 15 54439829 16 84229608 0 19 UNEVALUABLE UNEVALUABLE
659_eeB INTERGENIC ZNF823 chr19 9062164 chr19 11721968 INV MantaINV:1:20215:20217:0:0:0 TRUTH 0 0 9 4207 19 9172840 19 11832783 0 9 UNEVALUABLE UNEVALUABLE
659_eeB INTERGENIC IL27RA chr19 11748822 chr19 14049056 INV MantaINV:1:20466:20467:0:0:0 TRUTH 0 0 13 1758 19 11859637 19 14159868 0 13 UNEVALUABLE UNEVALUABLE
659_gK LMNA NTRK1 chr1 156134412 chr1 156874829 DEL MantaDEL:1:610:611:0:0:0 TRUTH 0 0 1732 19718 1 156104203 1 156844621 0 1732 EVALUABLE BAM_REFUTED
659_ddv INTERGENIC FOXM1 chr12 2805918 chr12 2859319 DUP MantaDUP:TANDEM:42469:1:2:0:0:0 TRUTH 0 0 0 3611 12 2915084 12 2968485 0 0 UNEVALUABLE UNEVALUABLE
659_ddv ZFP28 INTERGENIC chr19 56551435 chr19 56561822 DEL MantaDEL:58195:0:1:0:0:0 TRUTH 0 0 4104 5 19 57062804 19 57073191 0 5 UNEVALUABLE UNEVALUABLE
659_ddv ACBD3 INTERGENIC chr1 226165907 chr1 226214921 DUP MantaDUP:TANDEM:7302:0:1:0:0:0 TRUTH 0 0 1161 6 1 226353608 1 226402622 0 6 UNEVALUABLE UNEVALUABLE
659_ddv FAM228A INTERGENIC chr2 24175956 chr7 132052948 BND MantaBND:8801:0:1:0:0:0:1 TRUTH 0 0 1663 0 2 24398825 7 131737707 0 0 UNEVALUABLE UNEVALUABLE
659_ddv INTERGENIC TBPL2 chr5 22970197 chr14 55440460 BND MantaBND:22050:0:1:0:0:0:0 TRUTH 0 0 0 1451 5 22970306 14 55907178 0 0 UNEVALUABLE UNEVALUABLE
659_ddv ATN1 INTERGENIC chr12 6941476 chr12 7462129 DUP MantaDUP:TANDEM:9244:1:2:0:2:0 TRUTH 0 0 2496 3 12 7050639 12 7614725 0 3 UNEVALUABLE UNEVALUABLE
659_ddv STARD13 RASA3 chr13 33218831 chr13 114007558 DUP MantaDUP:TANDEM:45701:0:1:0:0:0 TRUTH 0 0 1 627 13 33792968 13 114773034 0 1 UNEVALUABLE UNEVALUABLE
659_ddv INTERGENIC C7orf55-LUC7L2 chr7 68798751 chr7 139405690 DEL MantaDEL:29468:0:1:0:0:0 TRUTH 0 0 6 1493 7 68263738 7 139090436 0 6 UNEVALUABLE UNEVALUABLE
659_ddv SMEK1 INTERGENIC chr14 91509873 chr14 91510435 DEL MantaDEL:48052:0:0:1:0:0 TRUTH 152 0 2515 212 14 91976217 14 91976779 152 212 EVALUABLE BAM_CONFIRMED
659_ddv INTERGENIC CHMP4C chr4 38741142 chr8 81732667 BND MantaBND:9537:0:1:0:0:0:1 TRUTH 0 0 55 1021 4 38742763 8 82644902 0 55 EVALUABLE BAM_REFUTED
659_ddv NTRK2 INTERGENIC chr9 84863332 chr9 129472778 INV MantaINV:2:3619:3633:0:0:0 TRUTH 0 0 13546 5 9 87478247 9 132235057 0 5 UNEVALUABLE UNEVALUABLE
659_ddv INTERGENIC THPO chr3 184368728 chr3 184375907 DUP MantaDUP:TANDEM:2:1712:1713:0:0:0 TRUTH 0 0 484 3411 3 184086516 3 184093695 0 484 EVALUABLE BAM_REFUTED
659_ddv FAT4 INTERGENIC chr4 125451798 chr6 137235640 BND MantaBND:20990:0:1:0:0:0:1 TRUTH 0 0 5404 2 4 126372953 6 137556777 0 2 UNEVALUABLE UNEVALUABLE
659_ddv RP11-318A15.7 MFSD11 chr17 76737484 chr17 76761719 DEL MantaDEL:26136:1:5:0:0:0 TRUTH 0 0 14152 15 17 74733566 17 74757801 0 15 UNEVALUABLE UNEVALUABLE
659_ddv AC005841.1 FOXM1 chr12 2853387 chr12 2859110 DEL MantaDEL:42469:0:1:0:0:0 TRUTH 0 0 27 4011 12 2962553 12 2968276 0 27 EVALUABLE BAM_REFUTED
659_ddv XPO1 INTERGENIC chr2 61481213 chr2 61572841 DUP MantaDUP:TANDEM:9849:0:1:0:0:0 TRUTH 0 0 985 14 2 61708348 2 61799976 0 14 UNEVALUABLE UNEVALUABLE
659_ddv INTERGENIC PVRL1 chr11 119656655 chr11 119662932 DUP MantaDUP:TANDEM:2:1091:4669:0:1:0 TRUTH 0 0 0 5941 11 119527365 11 119533642 0 0 UNEVALUABLE UNEVALUABLE
659_ddv INTERGENIC KCNJ10 chr1 160035357 chr1 160042435 DUP MantaDUP:TANDEM:4957:0:1:0:0:0 TRUTH 0 0 0 2823 1 160005147 1 160012225 0 0 UNEVALUABLE UNEVALUABLE
659_ddv MYC INTERGENIC chr8 127736892 chr8 127751666 DUP MantaDUP:TANDEM:33512:0:2:0:0:0 TRUTH 0 0 12564 1 8 128749138 8 128763912 0 1 UNEVALUABLE UNEVALUABLE
659_ddv SKI AGT chr1 2306139 chr1 230705740 INV MantaINV:249:0:1:0:0:0 TRUTH 0 0 1436 1613 1 2237578 1 230841486 0 1436 EVALUABLE BAM_REFUTED
659_dz CD74 ROS1 chr5 150403458 chr6 117325916 BND MantaBND:16913:1:2:0:0:0:0 TRUTH 0 0 4379 5757 5 149783021 6 117647079 0 4379 EVALUABLE BAM_REFUTED
659_eGK FLI1 EWSR1 chr11 128804478 chr22 29288083 BND MantaBND:17658:0:1:1:0:0:0 TRUTH 0 0 2 10713 11 128674373 22 29684072 0 2 UNEVALUABLE UNEVALUABLE
659_eGK FLI1 EWSR1 chr11 128804496 chr22 29288025 BND MantaBND:17658:0:1:0:0:0:0 TRUTH 0 0 2 10419 11 128674391 22 29684014 0 2 UNEVALUABLE UNEVALUABLE
659_eNS DCST2 INTERGENIC chr1 155031662 chr15 77723738 BND MantaBND:2:319:322:0:0:0:1 TRUTH 0 0 1435 3 1 155004138 15 78016080 0 3 UNEVALUABLE UNEVALUABLE
659_eNS WDR18 PLK5 chr19 987567 chr19 1535127 DUP MantaDUP:TANDEM:28305:1:2:0:0:0 TRUTH 0 0 4 889 19 987567 19 1535126 0 4 UNEVALUABLE UNEVALUABLE
659_eNS FPGT-TNNI3K NLRC5 chr1 74302109 chr16 57081572 BND MantaBND:1474:0:1:0:0:0:1 TRUTH 0 0 1 795 1 74767793 16 57115484 0 1 UNEVALUABLE UNEVALUABLE
659_eNS C5orf17 NETO1 chr5 24013965 chr18 72858908 BND MantaBND:10465:0:1:0:0:0:0 TRUTH 0 0 0 878 5 24014074 18 70526143 0 0 UNEVALUABLE UNEVALUABLE
659_eNS PINLYP L34079.2 chr19 43581251 chr19 43583238 DUP MantaDUP:TANDEM:29891:0:1:0:0:0 TRUTH 0 0 2080 0 19 44085403 19 44087390 0 0 UNEVALUABLE UNEVALUABLE
659_eNS TMEM5 INTERGENIC chr12 63802259 chr12 63824053 DEL MantaDEL:22107:0:1:0:0:0 TRUTH 0 0 1323 275 12 64196039 12 64217833 0 275 EVALUABLE BAM_REFUTED
659_eNS PIP5K1A INTERGENIC chr1 151239129 chr1 151971891 DUP MantaDUP:TANDEM:2129:0:1:0:0:0 TRUTH 0 0 246 5 1 151211605 1 151944367 0 5 UNEVALUABLE UNEVALUABLE
659_eNS CPNE2 NETO1 chr16 57127953 chr18 72859072 BND MantaBND:8190:1:4:0:1:0:1 TRUTH 0 0 440 877 16 57161865 18 70526307 0 440 EVALUABLE BAM_REFUTED
659_eNS DCST1 MELK chr1 155042794 chr9 36614380 BND MantaBND:2367:0:1:0:0:0:1 TRUTH 0 0 1275 3 1 155015270 9 36614377 0 3 UNEVALUABLE UNEVALUABLE
659_eNS GOLPH3L MYEOV chr1 150684429 chr11 69296036 BND MantaBND:2:2350:2354:0:0:0:0 TRUTH 0 0 16 4361 1 150656905 11 69063503 0 16 UNEVALUABLE UNEVALUABLE
659_ePR TPM3 NTRK1 chr1 154168459 chr1 156874204 INV MantaINV:4158:0:1:0:0:0 TRUTH 0 0 280 13970 1 154140935 1 156843996 0 280 EVALUABLE BAM_REFUTED
659_ePR TPM3 NTRK1 chr1 154168478 chr1 156874207 INV MantaINV:4158:0:1:1:0:0 TRUTH 0 0 200 13969 1 154140954 1 156843999 0 200 EVALUABLE BAM_REFUTED
659_eRe IQGAP3 INTERGENIC chr1 156563307 chr17 74127919 BND MantaBND:5093:0:1:0:0:0:1 TRUTH 0 0 1419 59 1 156533099 17 72124058 0 59 EVALUABLE BAM_REFUTED
659_eRe VRK2 IMMT chr2 57960980 chr2 86159587 DEL MantaDEL:9909:0:1:0:0:0 TRUTH 0 0 1 360 2 58188115 2 86386710 0 1 UNEVALUABLE UNEVALUABLE
659_eRe RP11-287D1.3 TLX2 chr2 74329142 chr2 74515046 DUP MantaDUP:TANDEM:10425:0:1:0:0:0 TRUTH 0 0 17 3951 2 74556269 2 74742173 0 17 UNEVALUABLE UNEVALUABLE
659_eRe DNAH6 TCF7L1 chr2 84653812 chr2 85230257 DUP MantaDUP:TANDEM:10685:0:1:0:0:0 TRUTH 0 0 1670 8 2 84880936 2 85457380 0 8 UNEVALUABLE UNEVALUABLE
659_eRe SNED1 HDLBP chr2 241052342 chr2 241235587 DUP MantaDUP:TANDEM:15099:0:1:0:0:0 TRUTH 0 0 1316 1105 2 241991759 2 242175002 0 1105 EVALUABLE BAM_REFUTED
659_eRe BRPF1 IL17RC chr3 9739309 chr3 9928296 DUP MantaDUP:TANDEM:15345:0:1:0:0:0 TRUTH 0 0 3841 1609 3 9780993 3 9969980 0 1609 EVALUABLE BAM_REFUTED
659_eRe TBC1D1 WDR19 chr4 38049695 chr4 39208709 DEL MantaDEL:21286:0:1:0:0:0 TRUTH 0 0 1111 17 4 38051316 4 39210329 0 17 UNEVALUABLE UNEVALUABLE
659_eRe INTERGENIC C11orf88 chr11 111337070 chr11 111534418 INV MantaINV:47305:0:1:0:0:0 TRUTH 0 0 1 270 11 111207795 11 111405143 0 1 UNEVALUABLE UNEVALUABLE
659_eRe ETV6 LRP6 chr12 11878173 chr12 12244545 DUP MantaDUP:TANDEM:3:8810:8930:0:0:0 TRUTH 0 0 9603 1277 12 12031107 12 12397479 0 1277 EVALUABLE BAM_REFUTED
659_eRe IL34 MTSS1L chr16 70620792 chr16 70664308 DUP MantaDUP:TANDEM:57349:0:1:0:0:0 TRUTH 0 0 0 4302 16 70654695 16 70698211 0 0 UNEVALUABLE UNEVALUABLE
659_eRe ZNF557 CTD-2207O23.3 chr19 7083587 chr19 7399520 INV MantaINV:62364:0:3:0:0:0 TRUTH 0 0 2802 9 19 7083598 19 7464406 0 9 UNEVALUABLE UNEVALUABLE
659_eRe INTERGENIC TRIB3 chr20 241062 chr20 396323 DUP MantaDUP:TANDEM:65166:0:1:0:0:0 TRUTH 0 0 1 3016 20 221703 20 376967 0 1 UNEVALUABLE UNEVALUABLE
659_eRe INTERGENIC SYTL4 chrX 94775398 chrX 100676112 INV MantaINV:69115:0:1:0:0:0 TRUTH 0 0 0 819 X 94030397 X 99931109 0 0 UNEVALUABLE UNEVALUABLE
659_ebV CLCN6 PNPLA2 chr1 11839140 chr11 824325 BND MantaBND:389:0:1:0:0:0:1 TRUTH 0 0 618 3676 1 11899197 11 824325 0 618 EVALUABLE BAM_REFUTED
659_ebV INTERGENIC EPHA8 chr1 22228518 chr1 22601037 DUP MantaDUP:TANDEM:628:0:1:0:0:0 TRUTH 0 0 3 3732 1 22555011 1 22927530 0 3 UNEVALUABLE UNEVALUABLE
659_ebV OTUD7B HORMAD1 chr1 149944336 chr1 150715693 DUP MantaDUP:TANDEM:2549:0:1:0:0:0 TRUTH 0 0 3667 6 1 149916235 1 150688169 0 6 UNEVALUABLE UNEVALUABLE
659_ebV RPRD2 INTERGENIC chr1 150457370 chr1 153164749 DUP MantaDUP:TANDEM:2553:0:1:0:0:0 TRUTH 0 0 842 0 1 150429846 1 153137225 0 0 UNEVALUABLE UNEVALUABLE
659_ebV LAMC2 INTERGENIC chr1 183240078 chr1 185587634 DUP MantaDUP:TANDEM:3317:0:1:0:0:0 TRUTH 0 0 2249 2 1 183209213 1 185556766 0 2 UNEVALUABLE UNEVALUABLE
659_ebV KIF26B INTERGENIC chr1 245446661 chr1 247257104 DUP MantaDUP:TANDEM:4350:0:1:0:0:0 TRUTH 0 0 1 1887 1 245609963 1 247420406 0 1 UNEVALUABLE UNEVALUABLE
659_ebV WDR43 CLIP4 chr2 28895180 chr2 29133807 DUP MantaDUP:TANDEM:4786:0:1:0:0:0 TRUTH 0 0 1217 680 2 29118046 2 29356673 0 680 EVALUABLE BAM_REFUTED
659_ebV PSME4 INTERGENIC chr2 53920983 chr2 54079327 INV MantaINV:5193:0:1:0:0:0 TRUTH 1 0 702 3 2 54148120 2 54306464 1 3 UNEVALUABLE UNEVALUABLE
659_ebV ALMS1 LRRTM4 chr2 73448739 chr2 76934996 DUP MantaDUP:TANDEM:5479:0:1:0:3:0 TRUTH 0 0 4626 0 2 73675866 2 77162122 0 0 UNEVALUABLE UNEVALUABLE
659_ebV INTERGENIC FAM126B chr2 200696894 chr2 201009078 DUP MantaDUP:TANDEM:6897:0:1:0:0:0 TRUTH 0 0 3 264 2 201561617 2 201873801 0 3 UNEVALUABLE UNEVALUABLE
659_ebV FZD5 MYBPC1 chr2 207762958 chr12 101677326 BND MantaBND:7087:0:1:0:0:0:1 TRUTH 0 0 0 828 2 208627682 12 102071104 0 0 UNEVALUABLE UNEVALUABLE
659_ebV MAP4 P4HTM chr3 48086186 chr3 49006905 DUP MantaDUP:TANDEM:8343:0:1:0:0:0 TRUTH 0 0 16 1256 3 48127676 3 49044338 0 16 UNEVALUABLE UNEVALUABLE
659_ebV INTERGENIC WHSC1 chr4 88121 chr4 1978896 DUP MantaDUP:TANDEM:10058:0:1:0:0:0 TRUTH 0 0 71 4758 4 88009 4 1980623 0 71 EVALUABLE BAM_REFUTED
659_ebV INTERGENIC ZFP1 chr4 82079313 chr16 75166590 BND MantaBND:10965:0:1:0:0:0:1 TRUTH 0 0 2 1736 4 83000466 16 75200488 0 2 UNEVALUABLE UNEVALUABLE
659_ebV OR2B2 INTERGENIC chr6 27912213 chr6 27912806 DEL MantaDEL:14278:0:0:3:0:0 TRUTH 165 0 2266 196 6 27879991 6 27880584 165 196 EVALUABLE BAM_CONFIRMED
659_ebV TSPYL4 INTERGENIC chr6 116253427 chr6 117888099 DUP MantaDUP:TANDEM:15476:0:1:0:0:0 TRUTH 0 0 5018 0 6 116574590 6 118209262 0 0 UNEVALUABLE UNEVALUABLE
659_ebV KMT2E NAMPT chr7 105112879 chr7 106276455 DUP MantaDUP:TANDEM:1:5221:5222:0:0:0 TRUTH 0 0 3996 98 7 104753326 7 105916901 0 98 EVALUABLE BAM_REFUTED
659_ebV POP1 INTERGENIC chr8 98158067 chr8 100253425 DUP MantaDUP:TANDEM:19488:0:1:0:0:0 TRUTH 0 0 2663 0 8 99170295 8 101265653 0 0 UNEVALUABLE UNEVALUABLE
659_ebV BRCA2 INTERGENIC chr13 32354179 chr13 32782911 DUP MantaDUP:TANDEM:1:8804:8805:0:0:0 TRUTH 1 1 9514 1 13 32928316 13 33357049 2 1 UNEVALUABLE UNEVALUABLE
659_ebV INTERGENIC TMPRSS2 chr17 39535864 chr21 41502579 BND MantaBND:1:13081:13102:0:0:0:0 TRUTH 0 0 0 12599 17 37692117 21 42874506 0 0 UNEVALUABLE UNEVALUABLE
659_ebV ANKFN1 VMP1 chr17 56372773 chr17 59781937 DUP MantaDUP:TANDEM:33726:0:1:0:0:0 TRUTH 0 0 883 10 17 54450134 17 57859298 0 10 UNEVALUABLE UNEVALUABLE
659_ebV TBC1D16 FASN chr17 80032303 chr17 82083341 DEL MantaDEL:1:11301:11302:0:0:0 TRUTH 0 0 0 4182 17 78006102 17 80041217 0 0 UNEVALUABLE UNEVALUABLE
659_Cc INTERGENIC PAPPA chr1 103294428 chr9 116235139 BND MantaBND:6648:0:1:0:0:0:0 TRUTH 0 0 0 2225 1 103759984 9 118997418 0 0 UNEVALUABLE UNEVALUABLE
659_Cc INTERGENIC HEATR5B chr1 118251242 chr2 37007266 BND MantaBND:7592:0:1:0:0:0:0 TRUTH 0 0 0 1299 1 118793865 2 37234409 0 0 UNEVALUABLE UNEVALUABLE
659_Cc ISG20L2 INTERGENIC chr1 156727415 chr12 89913099 BND MantaBND:9114:0:1:0:0:0:1 TRUTH 0 0 4701 10 1 156697207 12 90306876 0 10 UNEVALUABLE UNEVALUABLE
659_Cc SUCO TRIM5 chr1 172547955 chr11 5665018 BND MantaBND:9975:0:1:0:0:0:1 TRUTH 0 0 1 5780 1 172517095 11 5686248 0 1 UNEVALUABLE UNEVALUABLE
659_Cc EPCAM MSH2 chr2 47378287 chr2 47415381 DEL MantaDEL:16500:0:1:0:0:0 TRUTH 0 0 42 10308 2 47605426 2 47642520 0 42 EVALUABLE BAM_REFUTED
659_Cc SUMF1 TRIO chr3 4420147 chr5 14439892 BND MantaBND:25581:0:1:0:0:0:0 TRUTH 0 0 604 4 3 4461831 5 14440001 0 4 UNEVALUABLE UNEVALUABLE
659_Cc SMIM4 INTERGENIC chr3 52540455 chr13 93010799 BND MantaBND:28404:0:1:0:0:0:1 TRUTH 0 0 501 0 3 52574471 13 93663052 0 0 UNEVALUABLE UNEVALUABLE
659_Cc PIK3R4 INTERGENIC chr3 130723580 chr3 151083526 INV MantaINV:31387:0:1:0:0:0 TRUTH 0 0 1007 2 3 130442424 3 150801313 0 2 UNEVALUABLE UNEVALUABLE
659_Cc SMC4 PPM1L chr3 160431145 chr3 160960529 INV MantaINV:32624:0:1:0:0:0 TRUTH 0 0 1825 2 3 160148933 3 160678317 0 2 UNEVALUABLE UNEVALUABLE
659_Cc INTERGENIC PRDM11 chr3 173453049 chr11 45224275 BND MantaBND:32992:0:1:0:0:0:0 TRUTH 0 0 0 3929 3 173170839 11 45245826 0 0 UNEVALUABLE UNEVALUABLE
659_Cc KLHL5 DYX1C1 chr4 39076012 chr15 55469039 BND MantaBND:35612:0:1:0:0:0:1 TRUTH 0 0 879 13 4 39077632 15 55761237 0 13 UNEVALUABLE UNEVALUABLE
659_Cc QKI TRIM3 chr6 163570524 chr11 6458710 BND MantaBND:12:4147:4148:0:1:0:1 TRUTH 0 0 10282 720 6 163991556 11 6479940 0 720 EVALUABLE BAM_REFUTED
659_Cc PRKAG2 CEP128 chr7 151736337 chr14 80857761 BND MantaBND:12:5036:5041:0:4:0:0 TRUTH 0 0 3639 2 7 151433423 14 81324105 0 2 UNEVALUABLE UNEVALUABLE
659_Cc ANXA13 SERGEF chr8 123735064 chr11 17788176 BND MantaBND:63144:0:1:0:0:0:0 TRUTH 0 0 60 1821 8 124747304 11 17809723 0 60 EVALUABLE BAM_REFUTED
659_Cc CLUL1 INTERGENIC chr18 616697 chr20 40485423 BND MantaBND:22391:1:2:0:1:0:1 TRUTH 0 0 388 15 18 616697 20 39114063 0 15 UNEVALUABLE UNEVALUABLE
659_bua WWC1 RARS chr5 168454292 chr5 168488668 DUP MantaDUP:TANDEM:20558:1:2:0:0:0 TRUTH 0 0 1951 1004 5 167881297 5 167915673 0 1004 EVALUABLE BAM_REFUTED
659_bua INTERGENIC NTRK1 chr1 154158040 chr1 156874542 INV MantaINV:8:512:513:0:0:0 TRUTH 0 0 1 23863 1 154130516 1 156844334 0 1 UNEVALUABLE UNEVALUABLE
659_bua NUP210L NTRK1 chr1 154045451 chr1 156874242 DUP MantaDUP:TANDEM:8:513:514:0:0:0 TRUTH 0 0 48 22664 1 154017927 1 156844034 0 48 EVALUABLE BAM_REFUTED
659_bua NUP210L NTRK1 chr1 154045429 chr1 156874252 INV MantaINV:8:513:514:1:0:0 TRUTH 0 0 33 22765 1 154017905 1 156844044 0 33 EVALUABLE BAM_REFUTED
659_dyR UBE4B KIF1B chr1 10130714 chr1 10323322 DUP MantaDUP:TANDEM:379:0:1:0:0:0 TRUTH 0 0 1088 83 1 10190772 1 10383380 0 83 EVALUABLE BAM_REFUTED
659_dyR FOXC1 PHACTR1 chr6 1610755 chr6 12917980 DEL MantaDEL:15574:0:4:0:0:0 TRUTH 0 0 2587 3 6 1610990 6 12918212 0 3 UNEVALUABLE UNEVALUABLE
659_dyR FOXC1 INTERGENIC chr6 1610951 chr6 10217162 INV MantaINV:15574:0:6:0:0:0 TRUTH 0 0 2828 2 6 1611186 6 10217395 0 2 UNEVALUABLE UNEVALUABLE
659_dyR INTERGENIC ETV6 chr6 9980424 chr12 11885446 BND MantaBND:3:6654:6659:0:0:0:0 TRUTH 0 0 1 14073 6 9980657 12 12038380 0 1 UNEVALUABLE UNEVALUABLE
659_dyR INTERGENIC TFAP2A chr6 10078478 chr6 10412200 DUP MantaDUP:TANDEM:11289:1:2:0:0:0 TRUTH 0 0 0 3340 6 10078711 6 10412433 0 0 UNEVALUABLE UNEVALUABLE
659_dyR INTERGENIC YAF2 chr6 10357905 chr12 42237446 BND MantaBND:15754:0:1:0:0:0:1 TRUTH 0 0 3 1634 6 10358138 12 42631248 0 3 UNEVALUABLE UNEVALUABLE
659_dyR CDCA5 ZFPL1 chr11 65083658 chr11 65086369 INV MantaINV:27019:0:1:0:0:0 TRUTH 0 0 1939 2449 11 64851130 11 64853841 0 1939 EVALUABLE BAM_REFUTED
659_dyR CORO1B SHANK2 chr11 67440353 chr11 70575200 DUP MantaDUP:TANDEM:27174:0:2:0:0:0 TRUTH 0 0 1893 3 11 67207824 11 70421305 0 3 UNEVALUABLE UNEVALUABLE
659_dyR INTERGENIC LRTOMT chr11 69959406 chr11 72105933 DEL MantaDEL:27442:0:1:0:0:0 TRUTH 0 0 3 1717 11 69805512 11 71816979 0 3 UNEVALUABLE UNEVALUABLE
659_dyR ETV6 CASC1 chr12 11873598 chr12 25152959 INV MantaINV:3:6617:6619:0:0:0 TRUTH 0 0 9892 0 12 12026532 12 25305893 0 0 UNEVALUABLE UNEVALUABLE
659_dyR ETNK1 TMEM117 chr12 22625546 chr12 44174166 DEL MantaDEL:28784:0:1:0:0:0 TRUTH 0 0 2406 0 12 22778480 12 44567969 0 0 UNEVALUABLE UNEVALUABLE
659_dyR WDR89 INTERGENIC chr14 63599593 chr18 13152397 BND MantaBND:31792:0:1:0:0:0:1 TRUTH 0 0 3688 3 14 64066311 18 13152396 0 3 UNEVALUABLE UNEVALUABLE
659_dyR INTERGENIC ADAMTS7 chr15 77984623 chr15 78768159 INV MantaINV:3:7782:7804:0:0:0 TRUTH 0 0 9 996 15 78276965 15 79060501 0 9 UNEVALUABLE UNEVALUABLE
659_e6r INTERGENIC SLC10A4 chr4 48477792 chr4 48483624 DUP MantaDUP:TANDEM:2:14515:14516:0:0:0 TRUTH 0 0 0 2128 4 48479809 4 48485641 0 0 UNEVALUABLE UNEVALUABLE
659_e6r FAM178A ETV6 chr10 100957873 chr12 11874069 BND MantaBND:2:34985:34986:0:0:0:0 TRUTH 0 0 4 3039 10 102717630 12 12027003 0 4 UNEVALUABLE UNEVALUABLE
659_e6r INTERGENIC TAF5 chr10 103366544 chr10 103373482 DUP MantaDUP:TANDEM:2:30589:30590:0:0:0 TRUTH 0 0 28 840 10 105126301 10 105133239 0 28 EVALUABLE BAM_REFUTED
659_e6r IPO7 KMT2A chr11 9405182 chr11 118484917 INV MantaINV:2:34097:34098:0:0:0 TRUTH 0 0 32 9190 11 9426729 11 118355632 0 32 EVALUABLE BAM_REFUTED
659_e6r SLC2A13 INTERGENIC chr12 40105720 chr12 40115569 DUP MantaDUP:TANDEM:2:35325:35326:0:0:0 TRUTH 0 0 4034 0 12 40499522 12 40509371 0 0 UNEVALUABLE UNEVALUABLE
659_e6r EPHX3 BRD4 chr19 15227154 chr19 15238776 DUP MantaDUP:TANDEM:2:49034:49154:0:0:0 TRUTH 0 0 929 9413 19 15337965 19 15349587 0 929 EVALUABLE BAM_REFUTED
659_eHw NCKIPSD PTPRG chr3 48681332 chr3 62176296 DEL MantaDEL:11304:0:1:0:0:0 TRUTH 0 0 3060 0 3 48718765 3 62161970 0 0 UNEVALUABLE UNEVALUABLE
659_eHw ASPH MYC chr8 61712321 chr8 127737822 INV MantaINV:2:6626:6629:0:0:0 TRUTH 0 0 0 14575 8 62624880 8 128750068 0 0 UNEVALUABLE UNEVALUABLE
659_eHw MYC INTERGENIC chr8 127737475 chr19 4143505 BND MantaBND:2:6626:6628:0:0:0:0 TRUTH 0 0 13410 7 8 128749721 19 4143502 0 7 UNEVALUABLE UNEVALUABLE
659_eZ4 ERG TMPRSS2 chr21 38469543 chr21 41499094 DEL MantaDEL:13900:1:2:0:0:0 TRUTH 0 0 1 12049 21 39841466 21 42871021 0 1 UNEVALUABLE UNEVALUABLE
659_eZ4 PCM1 LTN1 chr8 17966161 chr21 28946045 BND MantaBND:22116:0:1:0:0:0:1 TRUTH 0 0 1028 930 8 17823670 21 30318367 0 930 EVALUABLE BAM_REFUTED
659_6i ERG TMPRSS2 chr21 38512158 chr21 41497245 DEL MantaDEL:48248:0:1:0:1:0 TRUTH 12 9 15 10124 21 39884082 21 42869172 21 15 UNEVALUABLE UNEVALUABLE
659_eHK REV1 INTERGENIC chr2 99451409 chr2 105458322 DEL MantaDEL:9170:0:1:0:0:0 TRUTH 0 0 755 23 2 100067871 2 106074779 0 23 EVALUABLE BAM_REFUTED
659_eHK INTERGENIC GHDC chr10 118977042 chr17 42190232 BND MantaBND:34621:0:1:0:0:0:1 TRUTH 0 0 2 2885 10 120736554 17 40342250 0 2 UNEVALUABLE UNEVALUABLE
659_eHK APOA5 EI24 chr11 116790450 chr11 125579975 INV MantaINV:37432:0:1:0:0:0 TRUTH 0 0 5097 484 11 116661166 11 125449871 0 484 EVALUABLE BAM_REFUTED
659_eHK ACAD8 INTERGENIC chr11 134262924 chr11 134393649 DEL MantaDEL:37765:0:1:0:0:0 TRUTH 0 0 3254 1 11 134132818 11 134263543 0 1 UNEVALUABLE UNEVALUABLE
659_eHK GNAO1 INTERGENIC chr16 56346875 chr16 56356711 INV MantaINV:1:8328:8335:0:0:0 TRUTH 0 0 3372 0 16 56380787 16 56390623 0 0 UNEVALUABLE UNEVALUABLE
659_eHK TP53 APPBP2 chr17 7675260 chr17 60486414 DUP MantaDUP:TANDEM:21935:1:4:0:0:0 TRUTH 0 0 6965 3 17 7578578 17 58563775 0 3 UNEVALUABLE UNEVALUABLE
659_eHK TP53 WRAP53 chr17 7676135 chr17 7687801 INV MantaINV:46556:0:1:0:0:0 TRUTH 0 0 6540 2 17 7579453 17 7591119 0 2 UNEVALUABLE UNEVALUABLE
659_eHK ADRA1D INTERGENIC chr20 4222078 chr20 17096072 INV MantaINV:27316:1:2:0:0:0 TRUTH 0 0 3768 0 20 4202725 20 17076717 0 0 UNEVALUABLE UNEVALUABLE
659_eHK INTERGENIC TOP1 chr20 40385936 chr20 41082953 DEL MantaDEL:1:10739:10843:0:0:0 TRUTH 0 0 1 11029 20 39014576 20 39711593 0 1 UNEVALUABLE UNEVALUABLE
659_eHK CECR2 INTERGENIC chr22 17548634 chr22 36207274 DUP MantaDUP:TANDEM:54822:0:1:0:0:0 TRUTH 0 0 5430 2 22 18028324 22 36603320 0 2 UNEVALUABLE UNEVALUABLE
659_eaQ MYB INTERGENIC chr6 135206773 chr9 14085332 BND MantaBND:20150:0:1:0:0:0:0 TRUTH 0 0 3741 13 6 135527911 9 14085331 0 13 UNEVALUABLE UNEVALUABLE
1427 rows