Error executing process > 'TSO_DEDUPE (LS0212_S44-vt3)'

Caused by:
  Process `TSO_DEDUPE (LS0212_S44-vt3)` terminated with an error exit status (1)


Command executed:

  set -euo pipefail
  '/usr/local/bin/dedupe' \
      --input_bam_path 'LS0212_S44.markdup.bam' \
      --output_bam_file 'LS0212_S44.markdup.deduped.bam' \
      --selector_path 'TST500C_manifest.add150bp.bed' \
      --stats-file 'LS0212_S44.markdup.deduped.stats' \
      --threads 4  \
      --variant_threshold 3

Command exit status:
  1

Command output:
  (empty)

Work dir:
  s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/85/11c6544e263c14cf007259ddf900f9

Container:
  644019535899.dkr.ecr.us-west-2.amazonaws.com/lcgp/rmdupes:1.5.6

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`