.command.log - Workdir - MUTECT2_TUMOR_ONLY (LS0907)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/1f/109c626217b808a5a95f8510f05af4/.command.log
Size: 1.4 KB
Task: MUTECT2_TUMOR_ONLY (LS0907)
Attempt

Content

  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/1f/109c626217b808a5a95f8510f05af4/.command.sh
  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0907/LS0907_tumor.bam.bai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: KD26F7J8TQVMQ2ZC, host id: uajIOVijSfMhUgU033IqxWIh5jga496TYMIOdSRl26J/BuLk+sETOKy35AjV4FNrRVep0EuRv5Q4C6Z2qlcVFPABDXUhAVD+WK9CZz03v/s=
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa hg38.fa": rename ./hg38.fa580639523 hg38.fa: no such file or directory
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz af-only-gnomad.hg38.vcf.gz": rename ./af-only-gnomad.hg38.vcf.gz3552842478 af-only-gnomad.hg38.vcf.gz: no such file or directory