.command.log - Workdir - MUTECT2_TUMOR_ONLY (LS0909)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/c0/a9002fdf29f9b471e2937f950c9e66/.command.log
Size: 1.3 KB
Task: MUTECT2_TUMOR_ONLY (LS0909)
Attempt

Content

  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0909/LS0909_tumor.bam
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/c0/a9002fdf29f9b471e2937f950c9e66/.command.sh
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: WFYAEVQMYJQGCAGT, host id: HByEizxJx9MDQAX78Wf6nYWP52sB9NU+/CyAujo99WmVjR9gTpHYEt0mfeme9sZmUhIvBhR55eDosJDgYumm0/cqizrexbZb
ERROR "cp s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0909/LS0909_tumor.bam LS0909_tumor.bam": open ./LS0909_tumor.bam1524008220: no such file or directory