File Info

Filename
.command.log
Full Path
s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/8f/efb8f6726f1ca377ceef4bf392e1f6/.command.log
Size
1.8 KB
Attempt
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/8f/efb8f6726f1ca377ceef4bf392e1f6/.command.sh
  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0904/LS0904_tumor.bam
  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0904/LS0904_tumor.bam.bai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: KD2C3GRWM6NDFKA1, host id: Xfy8QR207fXh0mI3DwZZ0JUJgt2a8R1sBAZzwb+xcm00ECGa5TybfqAc/iJ/z7QZhJOYZXfub+pRkfs01epJbd1IN/JfmylT
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz af-only-gnomad.hg38.vcf.gz": rename ./af-only-gnomad.hg38.vcf.gz3127305617 af-only-gnomad.hg38.vcf.gz: no such file or directory
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa hg38.fa": rename ./hg38.fa4133102928 hg38.fa: no such file or directory
ERROR "cp s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0904/LS0904_tumor.bam LS0904_tumor.bam": rename ./LS0904_tumor.bam214638508 LS0904_tumor.bam: no such file or directory