.command.log - Workdir - MUTECT2_TUMOR_ONLY (LS0898)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/83/9d3d2c23134d4950e1bbb58a128958/.command.log
Size: 1.1 KB
Task: MUTECT2_TUMOR_ONLY (LS0898)
Attempt

Content

  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0898/LS0898_tumor.bam.bai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/83/9d3d2c23134d4950e1bbb58a128958/.command.sh
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: 3ZTD5V0PD3PAHXQR, host id: 6+KY73wUfvsrzRAP+J48WaYKi81gAbgvaO8oJxDcELU/eIh5n+vt5Gs5S4v6SSo+BJqgjH78XYPRk5mgFHN29USFg8XCPUHh
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa hg38.fa": rename ./hg38.fa1587844735 hg38.fa: no such file or directory