.command.log - Workdir - MUTECT2_TUMOR_ONLY (LS0925)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/48/2fab79b9a2e7926d0b8f7b01da2fcf/.command.log
Size: 932 bytes
Task: MUTECT2_TUMOR_ONLY (LS0925)
Attempt

Content

  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/48/2fab79b9a2e7926d0b8f7b01da2fcf/.command.sh
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: VJY0XEC4KNS2YEJ4, host id: h9ibw8u/9PwB1YLkrgQxuE0NA9F3Px1wH9tRmmgUL6H/9kM8PH1JqPNV0U+w3R98BXf16Jnv7Lo=
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa hg38.fa": rename ./hg38.fa1526908258 hg38.fa: no such file or directory