.command.log - Workdir - MUTECT2_TUMOR_ONLY (LS0887)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/d4/1d37eff4661ce36521b9f0f87c27d3/.command.log
Size: 1.5 KB
Task: MUTECT2_TUMOR_ONLY (LS0887)
Attempt

Content

  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/d4/1d37eff4661ce36521b9f0f87c27d3/.command.sh
  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0887/LS0887_tumor.bam.bai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0887/LS0887_tumor.bam
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: KD28BSN3GFDJ90CD, host id: QeTwKAhU2sD60v0TiO3G6F2WsVxJiTw5/pzlcYxSvjmI2Z2GQeiQSREYiDE0ezqDWLk7rvjHXvw=
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa hg38.fa": rename ./hg38.fa3480270575 hg38.fa: no such file or directory
ERROR "cp s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0887/LS0887_tumor.bam LS0887_tumor.bam": rename ./LS0887_tumor.bam2746931268 LS0887_tumor.bam: no such file or directory