.command.log - Workdir - MUTECT2_TUMOR_ONLY (LS0896)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/e5/859fdfad4ede9bd6db67b66b56e476/.command.log
Size: 1.3 KB
Task: MUTECT2_TUMOR_ONLY (LS0896)
Attempt

Content

  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/e5/859fdfad4ede9bd6db67b66b56e476/.command.sh
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz.tbi
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: VRT3Z4TT0BWKKT4E, host id: QreO8LBGXgTE4HCdEz6gipY9B7xeZNILTXJ5s0iuN8wPc8flspiaw9lE7c80gn7E0tUPe9aIora3i/YdeL3KyiqtBtHwW79B
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz af-only-gnomad.hg38.vcf.gz": rename ./af-only-gnomad.hg38.vcf.gz2837995810 af-only-gnomad.hg38.vcf.gz: no such file or directory
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa hg38.fa": rename ./hg38.fa4222583645 hg38.fa: no such file or directory