.command.log - Workdir - MUTECT2_TUMOR_ONLY (LS0912)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/36/f809d2777d9c428aff7103cafb3d98/.command.log
Size: 1.4 KB
Task: MUTECT2_TUMOR_ONLY (LS0912)
Attempt

Content

  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/36/f809d2777d9c428aff7103cafb3d98/.command.sh
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: SH3BPAFHVYDN5KEM, host id: 4SbcsMR+RNqo5dVz7kUWffpo+J3PIVdvG0N/fgMyFV2i0tn+9XaZufiYJorRoz/N65n/PIqkpSrv+TdzqdmvLw==
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai hg38.fa.fai": rename ./hg38.fa.fai88718796 hg38.fa.fai: no such file or directory
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz af-only-gnomad.hg38.vcf.gz": open ./af-only-gnomad.hg38.vcf.gz2831782964: no such file or directory
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa hg38.fa": rename ./hg38.fa4285951696 hg38.fa: no such file or directory