.command.log - Workdir - MUTECT2_TUMOR_ONLY (LS0906)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/18/1cf183e0c3c5eff596f33183ee35d8/.command.log
Size: 1.2 KB
Task: MUTECT2_TUMOR_ONLY (LS0906)
Attempt

Content

  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/18/1cf183e0c3c5eff596f33183ee35d8/.command.sh
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: 3ZTA4X90FKZCP41M, host id: 6iLXplL1RkBkmfkZdHWaFPrdFc9EF+fVlYZErQA5coC/MTXzdgM0SBZ/q3uwymGiKKkUn4B8fbY=
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa hg38.fa": rename ./hg38.fa3540302511 hg38.fa: no such file or directory
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz af-only-gnomad.hg38.vcf.gz": rename ./af-only-gnomad.hg38.vcf.gz1589278327 af-only-gnomad.hg38.vcf.gz: no such file or directory