File Info

Filename
.command.log
Full Path
s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/38/18f817c36391514533119a0aee167e/.command.log
Size
1.2 KB
Task
MUTECT2_TUMOR_ONLY (LS0888)
Attempt

Content

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  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0888/LS0888_tumor.bam
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/38/18f817c36391514533119a0aee167e/.command.sh
  Downloading: s3://lcgp-v1/analysis/20260410_LH01147_0003_A23LTV7LT4-30e8cff3-bb76-4fb1-8024-010a94113bb0/Logs_Intermediates/DragenCaller/LS0888/LS0888_tumor.bam.bai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/af-only-gnomad.hg38.vcf.gz
ERROR "ls s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed": no object found
ERROR "cp s3://fsdx-algo-644019535899-us-west-2-an/TSO500/TST500C_manifest.bed/TST500C_manifest.bed TST500C_manifest.bed": NoSuchKey: The specified key does not exist. status code: 404, request id: XZ67TJHFEBCZ4BMB, host id: 36yANUyWBdGqRcl80SqCoASSlLBB0EFc+7NYJVUCD4Msj3quAqt/nBYGoxV4b6syGFhdHEVNLJfQ72DEZlphOLi4wIsRSSMH