File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/ab07e21e2b2d3d3b11bcbc806d869c/.command.log
Size
1.0 KB
Task
VARIANT_COMPARISON_TSO500:BCFTOOLS_NORM_TEST (1029_BCKB-T1-TDNA-1_A23KC75LT4_1_vs_1029_BCKB-N1-BDNA-1_B23KFG5LT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/ab07e21e2b2d3d3b11bcbc806d869c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/ab07e21e2b2d3d3b11bcbc806d869c/.command.run
  Downloading: s3://natera-platform-sandbox/platform-users/sgreer/pipeline-output/sarek_tools_a77_snv_indel__380c4714--20260524-002943/variant_calling/snv_indel/1029_BCKB-T1-TDNA-1_A23KC75LT4_1_vs_1029_BCKB-N1-BDNA-1_B23KFG5LT4_1/1029_BCKB-T1-TDNA-1_A23KC75LT4_1_vs_1029_BCKB-N1-BDNA-1_B23KFG5LT4_1.snv_indel.phased.vep.final.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
==> STAGING COMPLETE (5 inputs)

Lines   total/split/joined/realigned/skipped:	27158/0/0/0/0
Lines   total/split/joined/realigned/skipped:	28525/0/0/0/0