.command.err - Workdir - VARIANT_COMPARISON_TSO500:EXTRACT_VARIANT_TABLE_TEST (869_B0C-T1-TDNA-1_A23FG3YLT4_1_vs_869_B0C-N1-BDNA-1_A23FG3YLT4_1.strelka.hmnz)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b30b9de478f1d2c7468ada3aba8c5a/.command.err
Size: 463 bytes
Task: VARIANT_COMPARISON_TSO500:EXTRACT_VARIANT_TABLE_TEST (869_B0C-T1-TDNA-1_A23FG3YLT4_1_vs_869_B0C-N1-BDNA-1_A23FG3YLT4_1.strelka.hmnz)
Attempt

Content

Loading hotspot definitions from hotspot_definitions.tsv
Traceback (most recent call last):
  File "/tmp/nxf.hIjdKIgScT/nextflow-bin/extract_variant_table.py", line 412, in <module>
    main()
  File "/tmp/nxf.hIjdKIgScT/nextflow-bin/extract_variant_table.py", line 373, in main
    hotspots = load_hotspots(args.hotspot_tsv)
  File "/tmp/nxf.hIjdKIgScT/nextflow-bin/extract_variant_table.py", line 103, in load_hotspots
    pos = int(row["pos"])
KeyError: 'pos'