specimen_id	sample_id	chrom	pos	ref	alt	variant_type	original_variant_type	region	truth_vaf	pass_in_truth	is_hotspot	hotspot_label	exp_vaf	pass_in_exp	classification	test_vcf_status	test_vcf_filter	test_vcf_tumor_vaf	test_vcf_tumor_dp	test_vcf_tumor_ad_ref	test_vcf_tumor_ad_alt	test_vcf_normal_vaf	test_vcf_normal_dp	test_vcf_normal_ad_ref	test_vcf_normal_ad_alt
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr1	119916592	G	A	SNV	SNV	boosted_exome	0.4672000110149383	True	False	nan	0.4749999940395355	True	TP	called_pass	PASS	0.4749999940395355	4606	2410	2196	0.0021200000774115	1124	1123	1
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr1	158636760	C	T	SNV	SNV	boosted_exome	0.521399974822998	True	False	nan	0.6110000014305115	True	TP	called_pass	PASS	0.6110000014305115	4448	1715	2733	0.0012900000438094	1001	1001	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr2	25743239	G	A	SNV	SNV	boosted_exome	0.5317999720573425	True	False	nan	0.5099999904632568	True	TP	called_pass	PASS	0.5099999904632568	4097	2019	2078	0.000722000026144	1658	1658	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr2	47800285	C	T	SNV	SNV	boosted_exome	0.3411000072956085	True	False	nan	0.3400000035762787	True	TP	called_pass	PASS	0.3400000035762787	2568	1691	877	0.0009069999796338	1319	1318	1
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr3	179234297	A	G	SNV	SNV	boosted_exome	0.5263000130653381	True	True	PIK3CA p.His1047	0.4729999899864197	True	TP	called_pass	PASS	0.4729999899864197	3315	1734	1581	0.000304999994114	3970	3968	2
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr4	55115369	C	T	SNV	SNV	boosted_exome	0.4438999891281128	True	False	nan	0.3479999899864197	True	TP	called_pass	PASS	0.3479999899864197	1202	784	418	0.0013399999588727	968	968	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr5	1295135	G	A	SNV	SNV	boosted_exome	0.8174999952316284	True	False	nan	0.8519999980926514	True	TP	called_pass	PASS	0.8519999980926514	2336	332	2004	0.0010199999669566	1139	1138	1
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr5	56882468	A	G	SNV	SNV	boosted_exome	0.8391000032424927	True	False	nan	0.8289999961853027	True	TP	called_pass	PASS	0.8289999961853027	2440	417	2023	0.001010000007227	1131	1131	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr6	32213715	G	A	SNV	SNV	boosted_exome	0.2373999953269958	True	False	nan	0.2349999994039535	True	TP	called_pass	PASS	0.2349999994039535	4996	3810	1186	0.0008270000107586	1578	1578	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr6	93410659	G	A	SNV	SNV	boosted_exome	0.4469000101089477	True	False	nan	0.4860000014305115	True	TP	called_pass	PASS	0.4860000014305115	4697	2417	2280	0.0007489999989047	1594	1594	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr6	117324413	C	T	SNV	SNV	boosted_exome	0.4377999901771545	True	False	nan	0.4930000007152557	True	TP	called_pass	PASS	0.4930000007152557	1738	872	866	0.0017099999822676	1337	1336	1
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr7	140753336	A	T	SNV	SNV	boosted_exome	0.6837000250816345	True	True	BRAF p.Val600	0.6779999732971191	True	TP	called_pass	PASS	0.6779999732971191	3266	1043	2223	0.0021100000012665	2476	2470	6
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr7	148827209	G	A	SNV	SNV	boosted_exome	0.226500004529953	True	False	nan	0.2000000029802322	True	TP	called_pass	PASS	0.2000000029802322	1441	1158	283	0.0017800000496208	756	756	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr8	47840077	G	A	SNV	SNV	boosted_exome	0.2162999957799911	True	False	nan	0.2560000121593475	True	TP	called_pass	PASS	0.2560000121593475	1810	1341	469	0.0016599999507889	829	829	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr8	68192376	G	A	SNV	SNV	boosted_exome	0.5712000131607056	True	False	nan	0.5929999947547913	True	TP	called_pass	PASS	0.5929999947547913	1623	667	956	0.0027999999001622	436	436	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr9	125149801	G	A	SNV	SNV	boosted_exome	0.833299994468689	True	False	nan	0.8199999928474426	True	TP	called_pass	PASS	0.8199999928474426	1318	244	1074	0.0011500000255182	1104	1104	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr12	69574155	C	T	SNV	SNV	boosted_exome	0.2960000038146972	True	False	nan	0.2820000052452087	True	TP	called_pass	PASS	0.2820000052452087	4095	2961	1134	0.0007820000173524	1592	1592	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr12	69574155	CT	TC	MNV	MNV	boosted_exome	0.2960000038146972	True	False	nan		False	FN										
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr12	69574156	T	C	SNV	SNV	boosted_exome	0.2967000007629394	True	False	nan	0.2820000052452087	True	TP	called_pass	PASS	0.2820000052452087	4095	2961	1134	0.0007820000173524	1592	1592	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr13	101722929	C	T	SNV	SNV	boosted_exome	0.5023999810218811	True	False	nan	0.5299999713897705	True	TP	called_pass	PASS	0.5299999713897705	5380	2524	2856	0.0019399999873712	1269	1267	2
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr17	40349793	C	T	SNV	SNV	boosted_exome	0.0837000012397766	True	False	nan	0.0995000004768371	True	TP	called_pass	PASS	0.0995000004768371	3377	3049	328	0.0012799999676644	999	999	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr18	45038510	G	A	SNV	SNV	boosted_exome	0.7935000061988831	True	False	nan	0.8379999995231628	True	TP	called_pass	PASS	0.8379999995231628	1773	295	1478	0.0013299999991431	948	948	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr19	10489778	G	A	SNV	SNV	boosted_exome	0.3007000088691711	True	False	nan	0.2809999883174896	True	TP	called_pass	PASS	0.2809999883174896	3729	2683	1046	0.0010999999940395	1237	1237	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr19	11034992	C	T	SNV	SNV	boosted_exome	0.2737999856472015	True	False	nan	0.2809999883174896	True	TP	called_pass	PASS	0.2809999883174896	4351	3139	1212	0.0016100000357255	1534	1532	2
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr19	41256496	C	T	SNV	SNV	boosted_exome	0.2813999950885772	True	False	nan	0.2840000092983246	True	TP	called_pass	PASS	0.2840000092983246	3272	2333	939	0.0011800000211223	1127	1127	0
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chr20	58854030	C	T	SNV	SNV	boosted_exome	0.446399986743927	True	False	nan	0.4699999988079071	True	TP	called_pass	PASS	0.4699999988079071	6598	3470	3128	0.0013999999500811	1713	1711	2
1029_05O	1029_05O-T1-TDNA-1_23K7YCLT4_1_vs_1029_05O-N1-BDNA-1_235YY7LT3_1	chrX	53195038	C	T	SNV	SNV	boosted_exome	0.1709000021219253	True	False	nan	0.164000004529953	True	TP	called_pass	PASS	0.164000004529953	3865	3219	646	0.0008040000102482	1510	1510	0
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr2	25234373	C	T	SNV	SNV	boosted_exome	0.0164000000804662	True	False	nan		False	FN	called_hard_filtered	normal_artifact;high_normal_vaf	0.0207000002264976	5592	5477	115	0.0847000032663345	1178	1086	92
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr4	1806149	C	T	SNV	SNV	boosted_exome	0.0619000010192394	True	False	nan	0.0702999979257583	True	TP	called_pass	PASS	0.0702999979257583	2674	2480	194	0.0010400000028312	1182	1182	0
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr8	47779083	C	G	SNV	SNV	boosted_exome	0.0615000016987323	True	False	nan	0.0555999986827373	True	TP	called_pass	PASS	0.0555999986827373	1225	1160	65	0.001700000022538	772	772	0
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr17	48723750	G	A	SNV	SNV	nonboosted_exome	0.0153000000864267	True	False	nan		False	FN	called_hard_filtered	normal_artifact;high_normal_vaf	0.0105999996885657	2190	2167	23	0.0284000001847744	483	471	12
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr19	5210563	C	T	SNV	SNV	boosted_exome	0.0388999991118907	True	False	nan		False	FN	called_hard_filtered	normal_artifact;high_normal_vaf	0.0544000007212162	3736	3528	208	0.1360000073909759	1173	1005	168
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr19	11034986	G	A	SNV	SNV	boosted_exome	0.0595000013709068	True	False	nan	0.0740000009536743	True	TP	called_pass	PASS	0.0740000009536743	3919	3629	290	0.0015300000086426	1408	1407	1
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr20	32434483	T	TA	INDEL	INDEL	boosted_exome	0.0181000009179115	True	False	nan		False	FN										
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chrX	77574296	A	G	SNV	SNV	boosted_exome	0.0270000007003545	True	False	nan		False	FN	called_hard_filtered	haplotype	0.0483999997377395	1091	1038	53	0.0020999999251216	665	665	0
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chrX	101353979	C	A	SNV	SNV	boosted_exome	0.0564999990165233	True	False	nan	0.0791999995708465	True	TP	called_pass	PASS	0.0791999995708465	1911	1752	159	0.0015600000042468	837	837	0
1029_032	1029_032-T1-TDNA-1_23K7YCLT4_1_vs_1029_032-N1-BDNA-1_235YY7LT3_1	chr2	108782708	C	T	SNV	SNV	boosted_exome		False	False	nan	0.0226000007241964	True	FP	called_pass	PASS	0.0226000007241964	1575	1538	37	0.0009810000192373	1217	1217	0
1029_032	1029_032-T1-TDNA-1_23K7YCLT4_1_vs_1029_032-N1-BDNA-1_235YY7LT3_1	chr11	108343277	C	G	SNV	SNV	boosted_exome		False	False	nan	0.0320999994874	True	FP	called_pass	PASS	0.0320999994874	1426	1381	45	0.001010000007227	1344	1344	0
1029_032	1029_032-T1-TDNA-1_23K7YCLT4_1_vs_1029_032-N1-BDNA-1_235YY7LT3_1	chr13	28061918	A	G	SNV	SNV	boosted_exome		False	False	nan	0.0226000007241964	True	FP	called_pass	PASS	0.0226000007241964	1618	1582	36	0.0016299999551847	790	790	0
1029_032	1029_032-T1-TDNA-1_23K7YCLT4_1_vs_1029_032-N1-BDNA-1_235YY7LT3_1	chrX	44873590	T	C	SNV	SNV	boosted_exome		False	False	nan	0.0027099999133497	True	FP	called_pass	PASS	0.0027099999133497	9262	9115	147	0.0022599999792873	1941	1912	29
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr2	108765171	A	G	SNV	SNV	boosted_exome		False	False	nan	0.004139999859035	True	FP	called_pass	PASS	0.004139999859035	2854	2842	12	0.0012700000079348	1804	1803	1
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr3	185480362	G	C	SNV	SNV	boosted_exome		False	False	nan	0.0052800001576542	True	FP	called_pass	PASS	0.0052800001576542	5131	5104	27	0.0009740000241436	1253	1253	0
1029_0DT	1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1	chr22	21805981	G	A	SNV	SNV	boosted_exome		False	False	nan	0.0078900000080466	True	FP	called_pass	PASS	0.0078900000080466	1173	1163	10	0.0022700000554323	599	599	0