File Info
- Filename
- 1173_T46.cnv.hmnz.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/01_altera_exact_survey_feb26/Harmonize_dspe1173__b003992--20260226-165137/1173_T46/variants/cnv/1173_T46.cnv.hmnz.tsv
- Size
- 5.3 KB
- Workflow Run
- Harmonize_dspe1173
- Published
- Feb 26, 2026 9:00 AM
Content
View in new tab| sample | gene | amp_del | log2_ratio | chrom | gene_start | gene_end | consequence |
| 1173_T46 | CPNE8 | AMP | 2.02539 | chr12 | 38652184 | 38905631 | DUP |
| 1173_T46 | KIF21A | AMP | 2.32808 | chr12 | 39294420 | 39442986 | DUP |
| 1173_T46 | ABCD2 | AMP | 2.12108 | chr12 | 39550032 | 39619751 | DUP |
| 1173_T46 | SLC2A13 | AMP | 2.33202 | chr12 | 39755020 | 40105859 | DUP |
| 1173_T46 | LRRK2 | AMP | 2.18528 | chr12 | 40225073 | 40369281 | DUP |
| 1173_T46 | MUC19 | AMP | 2.03832 | chr12 | 40393394 | 40570760 | DUP |
| 1173_T46 | CNTN1 | AMP | 2.18996 | chr12 | 40692551 | 41072418 | DUP |
| 1173_T46 | PDZRN4 | AMP | 2.01771 | chr12 | 41188447 | 41574118 | DUP |
| 1173_T46 | GXYLT1 | AMP | 2.07974 | chr12 | 42081844 | 42144879 | DUP |
| 1173_T46 | YAF2 | AMP | 2.02433 | chr12 | 42159033 | 42238236 | DUP |
| 1173_T46 | SLC38A2 | AMP | 2.11548 | chr12 | 46358188 | 46372867 | DUP |
| 1173_T46 | PFKM | AMP | 2.10062 | chr12 | 48105922 | 48146104 | DUP |
| 1173_T46 | ASB8 | AMP | 2.13271 | chr12 | 48147787 | 48157595 | DUP |
| 1173_T46 | C12orf68 | AMP | 2.22239 | chr12 | 48183582 | 48185926 | DUP |
| 1173_T46 | H1FNT | AMP | 2.22185 | chr12 | 48328979 | 48330279 | DUP |
| 1173_T46 | ZNF641 | AMP | 2.06578 | chr12 | 48340126 | 48350771 | DUP |
| 1173_T46 | KRT6A | AMP | 2.06946 | chr12 | 52487173 | 52493257 | DUP |
| 1173_T46 | KRT5 | AMP | 2.12571 | chr12 | 52514574 | 52520687 | DUP |
| 1173_T46 | KRT71 | AMP | 2.03465 | chr12 | 52543908 | 52553147 | DUP |
| 1173_T46 | CBX5 | AMP | 2.19484 | chr12 | 54230939 | 54280102 | DUP |
| 1173_T46 | HNRNPA1 | AMP | 2.29678 | chr12 | 54280754 | 54285214 | DUP |
| 1173_T46 | GPR84 | AMP | 2.10321 | chr12 | 54362446 | 54364487 | DUP |
| 1173_T46 | ZNF385A | AMP | 2.17959 | chr12 | 54369139 | 54391298 | DUP |
| 1173_T46 | ITGA5 | AMP | 2.31083 | chr12 | 54395260 | 54419460 | DUP |
| 1173_T46 | NCKAP1L | AMP | 2.08965 | chr12 | 54497710 | 54543942 | DUP |
| 1173_T46 | PDE1B | AMP | 2.08918 | chr12 | 54549349 | 54579239 | DUP |
| 1173_T46 | PPP1R1A | AMP | 2.15428 | chr12 | 54579247 | 54588659 | DUP |
| 1173_T46 | OR10P1 | AMP | 2.06905 | chr12 | 55636859 | 55637854 | DUP |
| 1173_T46 | METTL7B | AMP | 2.0684 | chr12 | 55681545 | 55684611 | DUP |
| 1173_T46 | ITGA7 | AMP | 2.08909 | chr12 | 55684567 | 55707701 | DUP |
| 1173_T46 | RP11-644F5.10 | AMP | 2.28089 | chr12 | 55716035 | 55724703 | DUP |
| 1173_T46 | BLOC1S1 | AMP | 2.27143 | chr12 | 55716036 | 55719703 | DUP |
| 1173_T46 | RDH5 | AMP | 2.29062 | chr12 | 55720397 | 55724705 | DUP |
| 1173_T46 | CD63 | AMP | 2.29359 | chr12 | 55725481 | 55729707 | DUP |
| 1173_T46 | GDF11 | AMP | 2.11588 | chr12 | 55743279 | 55752352 | DUP |
| 1173_T46 | RP11-762I7.5 | AMP | 2.10357 | chr12 | 55757274 | 55827546 | DUP |
| 1173_T46 | ORMDL2 | AMP | 2.20649 | chr12 | 55817918 | 55821879 | DUP |
| 1173_T46 | DNAJC14 | AMP | 2.1125 | chr12 | 55820959 | 55830781 | DUP |
| 1173_T46 | MMP19 | AMP | 2.51549 | chr12 | 55836425 | 55842922 | DUP |
| 1173_T46 | WIBG | AMP | 2.47552 | chr12 | 55901412 | 55927913 | DUP |
| 1173_T46 | DGKA | AMP | 2.07309 | chr12 | 55930971 | 55954015 | DUP |
| 1173_T46 | CDK2 | AMP | 2.14001 | chr12 | 55966768 | 55972784 | DUP |
| 1173_T46 | RPS26 | AMP | 2.47201 | chr12 | 56041852 | 56044332 | DUP |
| 1173_T46 | OS9 | AMP | 2.34999 | chr12 | 57694120 | 57721555 | DUP |
| 1173_T46 | AGAP2-AS1 | AMP | 2.65192 | chr12 | 57726270 | 57728356 | DUP |
| 1173_T46 | AGAP2 | AMP | 2.50161 | chr12 | 57726551 | 57738246 | DUP |
| 1173_T46 | TSPAN31 | AMP | 2.7132 | chr12 | 57744880 | 57748232 | DUP |
| 1173_T46 | CDK4 | AMP | 2.50339 | chr12 | 57747726 | 57752521 | DUP |
| 1173_T46 | MARCH9 | AMP | 2.60381 | chr12 | 57755097 | 57760407 | DUP |
| 1173_T46 | CYP27B1 | AMP | 2.43762 | chr12 | 57762338 | 57767251 | DUP |
| 1173_T46 | METTL1 | AMP | 2.41301 | chr12 | 57768470 | 57772793 | DUP |
| 1173_T46 | METTL21B | AMP | 2.48138 | chr12 | 57772599 | 57782403 | DUP |
| 1173_T46 | RP11-571M6.15 | AMP | 2.54915 | chr12 | 57773027 | 57787046 | DUP |
| 1173_T46 | TSFM | AMP | 2.51339 | chr12 | 57782775 | 57796734 | DUP |
| 1173_T46 | AVIL | AMP | 2.31415 | chr12 | 57797881 | 57816471 | DUP |
| 1173_T46 | CTDSP2 | AMP | 2.35661 | chr12 | 57819926 | 57846739 | DUP |
| 1173_T46 | XRCC6BP1 | AMP | 2.2258 | chr12 | 57941576 | 57957269 | DUP |
| 1173_T46 | LRIG3 | AMP | 2.3921 | chr12 | 58872148 | 58920522 | DUP |
| 1173_T46 | SLC16A7 | AMP | 2.31016 | chr12 | 59689336 | 59782614 | DUP |
| 1173_T46 | AVPR1A | AMP | 2.16369 | chr12 | 63147196 | 63150942 | DUP |
| 1173_T46 | RASSF3 | AMP | 2.12001 | chr12 | 64610512 | 64697567 | DUP |
| 1173_T46 | MSRB3 | AMP | 2.0987 | chr12 | 65278642 | 65466906 | DUP |
| 1173_T46 | HMGA2 | AMP | 2.21376 | chr12 | 65824130 | 65966295 | DUP |
| 1173_T46 | CAND1 | AMP | 2.43927 | chr12 | 67269280 | 67319951 | DUP |
| 1173_T46 | DYRK2 | AMP | 2.50414 | chr12 | 67648720 | 67665406 | DUP |
| 1173_T46 | IFNG | AMP | 2.44035 | chr12 | 68154767 | 68159747 | DUP |
| 1173_T46 | IL26 | AMP | 2.53967 | chr12 | 68201350 | 68225821 | DUP |
| 1173_T46 | IL22 | AMP | 2.46988 | chr12 | 68248241 | 68253607 | DUP |
| 1173_T46 | MDM1 | AMP | 2.76309 | chr12 | 68294567 | 68332332 | DUP |
| 1173_T46 | RAP1B | AMP | 2.53149 | chr12 | 68610838 | 68660592 | DUP |
| 1173_T46 | NUP107 | AMP | 2.60427 | chr12 | 68686733 | 68743005 | DUP |
| 1173_T46 | SLC35E3 | AMP | 2.79035 | chr12 | 68746105 | 68768690 | DUP |
| 1173_T46 | MDM2 | AMP | 2.54452 | chr12 | 68808175 | 68845434 | DUP |
| 1173_T46 | CPM | AMP | 2.38796 | chr12 | 68851174 | 68933199 | DUP |
| 1173_T46 | CPSF6 | AMP | 2.69925 | chr12 | 69239536 | 69274358 | DUP |
| 1173_T46 | LYZ | AMP | 2.36836 | chr12 | 69348340 | 69354234 | DUP |
| 1173_T46 | YEATS4 | AMP | 2.63009 | chr12 | 69359702 | 69390796 | DUP |
| 1173_T46 | FRS2 | AMP | 2.53614 | chr12 | 69470348 | 69579779 | DUP |
| 1173_T46 | CCT2 | AMP | 2.77126 | chr12 | 69585333 | 69601570 | DUP |
| 1173_T46 | LRRC10 | AMP | 2.46672 | chr12 | 69608570 | 69611162 | DUP |
| 1173_T46 | BEST3 | AMP | 2.42376 | chr12 | 69653608 | 69699416 | DUP |
| 1173_T46 | RAB3IP | AMP | 2.44083 | chr12 | 69739389 | 69823204 | DUP |
| 1173_T46 | MYRFL | AMP | 2.33168 | chr12 | 69825303 | 69958723 | DUP |
| 1173_T46 | CNOT2 | AMP | 2.55333 | chr12 | 70242996 | 70354993 | DUP |
| 1173_T46 | KCNMB4 | AMP | 2.70066 | chr12 | 70366275 | 70434292 | DUP |
| 1173_T46 | PTPRB | AMP | 2.40778 | chr12 | 70516849 | 70637440 | DUP |
| 1173_T46 | PTPRR | AMP | 2.4176 | chr12 | 70638081 | 70920843 | DUP |
| 1173_T46 | TSPAN8 | AMP | 2.23715 | chr12 | 71125084 | 71441898 | DUP |
| 1173_T46 | LGR5 | AMP | 2.04308 | chr12 | 71439769 | 71586310 | DUP |
| 1173_T46 | ZFC3H1 | AMP | 2.24878 | chr12 | 71609471 | 71663969 | DUP |
| 1173_T46 | THAP2 | AMP | 2.52254 | chr12 | 71663008 | 71680639 | DUP |
| 1173_T46 | RP11-293I14.2 | AMP | 2.15448 | chr12 | 71674203 | 71698968 | DUP |
| 1173_T46 | TMEM19 | AMP | 2.16883 | chr12 | 71686086 | 71704056 | DUP |
| 1173_T46 | RAB21 | AMP | 2.27517 | chr12 | 71754873 | 71790919 | DUP |
| 1173_T46 | TBC1D15 | AMP | 2.17591 | chr12 | 71839717 | 71926849 | DUP |
| 1173_T46 | TPH2 | AMP | 2.15903 | chr12 | 71938845 | 72032441 | DUP |
97 rows