File Info
- Filename
- 1173_QK4.cnv.hmnz.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/01_altera_exact_survey_feb26/Harmonize_dspe1173__b003992--20260226-165137/1173_QK4/variants/cnv/1173_QK4.cnv.hmnz.tsv
- Size
- 2.7 KB
- Workflow Run
- Harmonize_dspe1173
- Published
- Feb 26, 2026 9:01 AM
Content
View in new tab| sample | gene | amp_del | log2_ratio | chrom | gene_start | gene_end | consequence |
| 1173_QK4 | PLCH2 | DEL | -1.44837 | chr1 | 2476314 | 2505525 | DEL |
| 1173_QK4 | ACTRT2 | DEL | -1.90484 | chr1 | 3021481 | 3022901 | DEL |
| 1173_QK4 | PTCHD2 | DEL | -1.42986 | chr1 | 11479237 | 11537584 | DEL |
| 1173_QK4 | PRAMEF12 | DEL | -1.50544 | chr1 | 12774840 | 12777906 | DEL |
| 1173_QK4 | PRAMEF1 | DEL | -1.38941 | chr1 | 12791396 | 12796628 | DEL |
| 1173_QK4 | PRAMEF11 | DEL | -1.52862 | chr1 | 12824609 | 12831410 | DEL |
| 1173_QK4 | PRAMEF2 | DEL | -1.4061 | chr1 | 12857085 | 12861909 | DEL |
| 1173_QK4 | PRAMEF4 | DEL | -1.60016 | chr1 | 12879223 | 12886201 | DEL |
| 1173_QK4 | ACTL8 | DEL | -1.37644 | chr1 | 17755312 | 17827063 | DEL |
| 1173_QK4 | PAX7 | DEL | -1.43541 | chr1 | 18631005 | 18736138 | DEL |
| 1173_QK4 | TAS1R2 | DEL | -1.43041 | chr1 | 18839598 | 18859682 | DEL |
| 1173_QK4 | EPHA8 | DEL | -1.41512 | chr1 | 22563563 | 22603594 | DEL |
| 1173_QK4 | C1QB | DEL | -1.39525 | chr1 | 22653188 | 22661536 | DEL |
| 1173_QK4 | UROD | AMP | 1.06732 | chr1 | 45012146 | 45015575 | DUP |
| 1173_QK4 | HIST2H2AC | AMP | 1.31034 | chr1 | 149886974 | 149887411 | DUP |
| 1173_QK4 | IRF2BP2 | AMP | 1.41398 | chr1 | 234604268 | 234609525 | DUP |
| 1173_QK4 | PCBP1 | AMP | 1.24653 | chr2 | 70087452 | 70089200 | DUP |
| 1173_QK4 | AQP12A | DEL | -1.43905 | chr2 | 240691850 | 240698479 | DEL |
| 1173_QK4 | SOX4 | AMP | 1.21837 | chr6 | 21593740 | 21598616 | DUP |
| 1173_QK4 | HIST1H1C | AMP | 1.19976 | chr6 | 26055739 | 26056471 | DUP |
| 1173_QK4 | HIST1H2AC | AMP | 1.15051 | chr6 | 26124144 | 26139116 | DUP |
| 1173_QK4 | HIST1H1E | AMP | 1.29998 | chr6 | 26156330 | 26157115 | DUP |
| 1173_QK4 | HIST1H2BJ | AMP | 1.161 | chr6 | 27125896 | 27132750 | DUP |
| 1173_QK4 | HIST1H2AK | AMP | 1.19794 | chr6 | 27837879 | 27838339 | DUP |
| 1173_QK4 | HIST1H1B | AMP | 1.14174 | chr6 | 27866791 | 27867581 | DUP |
| 1173_QK4 | CITED2 | AMP | 1.17792 | chr6 | 139372255 | 139374620 | DUP |
| 1173_QK4 | CEBPD | AMP | 1.69876 | chr8 | 47736908 | 47739086 | DUP |
| 1173_QK4 | LCN9 | DEL | -1.62909 | chr9 | 135663321 | 135666103 | DEL |
| 1173_QK4 | SOHLH1 | DEL | -1.5597 | chr9 | 135693410 | 135699528 | DEL |
| 1173_QK4 | KCNT1 | DEL | -1.40416 | chr9 | 135702191 | 135793103 | DEL |
| 1173_QK4 | IFITM3 | AMP | 1.052 | chr11 | 319668 | 321050 | DUP |
| 1173_QK4 | CPT1A | AMP | 1.10721 | chr11 | 68754888 | 68841916 | DUP |
| 1173_QK4 | MYEOV | AMP | 1.40993 | chr11 | 69294154 | 69297287 | DUP |
| 1173_QK4 | CCND1 | AMP | 1.38192 | chr11 | 69641086 | 69654474 | DUP |
| 1173_QK4 | ORAOV1 | AMP | 1.1952 | chr11 | 69665562 | 69675347 | DUP |
| 1173_QK4 | FADD | AMP | 1.51457 | chr11 | 70203162 | 70207390 | DUP |
| 1173_QK4 | PCED1B | AMP | 1.15944 | chr12 | 47079602 | 47236660 | DUP |
| 1173_QK4 | RPL41 | AMP | 1.13334 | chr12 | 56116585 | 56117943 | DUP |
| 1173_QK4 | ARF6 | AMP | 1.04367 | chr14 | 49893091 | 49894772 | DUP |
| 1173_QK4 | ITPRIPL2 | AMP | 1.82533 | chr16 | 19113931 | 19121624 | DUP |
| 1173_QK4 | EIF1 | AMP | 1.26105 | chr17 | 41688892 | 41692668 | DUP |
| 1173_QK4 | HEXIM1 | AMP | 1.28127 | chr17 | 45147316 | 45152101 | DUP |
| 1173_QK4 | CLEC17A | DEL | -1.36646 | chr19 | 14583122 | 14610420 | DEL |
| 1173_QK4 | OR7C1 | DEL | -1.43558 | chr19 | 14799145 | 14800211 | DEL |
| 1173_QK4 | OR7C2 | DEL | -1.46426 | chr19 | 14941488 | 14942448 | DEL |
| 1173_QK4 | SLC1A6 | DEL | -1.37223 | chr19 | 14950178 | 14972918 | DEL |
| 1173_QK4 | HAPLN4 | DEL | -1.35784 | chr19 | 19255640 | 19262796 | DEL |
| 1173_QK4 | CEBPB | AMP | 1.26867 | chr20 | 50190838 | 50192675 | DUP |
49 rows