succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 1m 1s 57s - - 5.4 MB 97% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 1m 0s 58s - - 6.1 MB 108% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 5s 3s - - 6.2 MB 105% 1.5 MB 401.0 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 5s 3s - - 5.9 MB 118% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 5s 3s - - 6.0 MB 106% 391.6 KB 84.0 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 5s 3s - - 6.2 MB 117% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 5s 3s - - 6.1 MB 106% 1.6 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 1m 18s 1m 9s 8s 1s 260.2 MB 207% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 6s 2s 54s 10s 276.8 MB 116% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 59s 58s 0s 0s 0 bytes 117% 73.6 KB 3.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:ClusterPanelRegions (aih_cnv_cohort_cluster_panel_regions) 3m 18s 1m 4s 2m 8s 5s 1.1 GB 104% 218.3 MB 15.4 MB 0 bytes 15.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 1m 23s 1m 1s 8s 13s 31.0 MB 158% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 7s 5s 1s 1s 131.5 MB 468% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1136_1B3-N1-BDNA-1_B23L5TMLT4_1) 56s 55s - - 3.2 MB 114% 305.7 KB 112.7 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1136_1B3-T1-TDNA-1_B23MHWGLT4_1) 5m 53s 56s - - 16.4 MB 98% 6.0 MB 116.7 KB 6.0 MB 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1) 9m 44s 4s - - 17.3 MB 120% 6.2 MB 117.4 KB 6.2 MB 8.0 KB 2
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (FFPE_HD789_01_p1_gDNA_0002_B23MHWGLT4_1) 10m 35s 56s - - 16.3 MB 103% 5.7 MB 116.8 KB 5.8 MB 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (NA12878_c_0002_gDNA_0001_B23KYWJLT4_1) 59s 56s - - 3.3 MB 112% 2.8 MB 113.0 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (NA12878_c_0002_gDNA_0001_B23L5TMLT4_1) 3m 20s 55s - - 16.0 MB 112% 4.9 MB 115.6 KB 5.0 MB 8.0 KB 1
19 items found