NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (NA12878_c_0002_gDNA_0001_B23KYWJLT4_1;chr4_30730753-30730788) - autorun-sarek-cgp_atx_experiments-chunk3 - Workflow Tracker

Runs
autorun-sare..ents-chunk3
Tasks
MUTECT2 (NA12878_c_0002_gDNA_0001_B23KYWJLT4_1;chr4_30730753-30730788)

Login

Task Info

Status: aborted
Hash: 0a3ca5ee5c00
Process: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2
Tag: NA12878_c_0002_gDNA_0001_B23KYWJLT4_1;chr4_30730753-30730788
Attempts: 2

Attempt 2

Execution

Status: aborted
Hash: 65/6936ac
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/6936ac250b18fdc52dcc08f94b273e
Native ID: nf-656936ac250b18fdc52dcc08f94b273e-7166a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 16.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:01 PM
Completed: Mar 02, 2026 3:04:57 PM
Total Duration: -

Phases

Queue: 2399h 13m
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: failed
Hash: e4/d5c06e
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/d5c06ead9d3474d5118f20fd503e05
Native ID: nf-e4d5c06ead9d3474d5118f20fd503e05-f4105

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 8.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d7b00bbb9c0fa962 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:58 PM
Completed: Mar 02, 2026 3:03:44 PM
Total Duration: 45s

Phases

Queue: 34s
Execution: 11s
Stage/Unstage: 0s