NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr) - autorun-sarek-cgp_atx_experiments-chunk3 - Workflow Tracker

Runs
autorun-sare..ents-chunk3
Tasks
BCFTOOLS_MPILEUP (FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr)

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Task Info

Status: failed
Hash: fe37491d293e
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1;SNP_GRCh38_hg38_wChr
Attempts: 3

Attempt 3

Execution

Status: failed
Hash: bb/5bd67a
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/5bd67aee90cd2f64ea10413a72a160
Native ID: nf-bb5bd67aee90cd2f64ea10413a72a160-55935

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:04:03 PM
Completed: Mar 02, 2026 3:04:24 PM
Total Duration: 20s

Phases

Queue: 12s
Execution: 8s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: b5/b7c2b9
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/b7c2b9f1f43a03ac9844a675d060a7
Native ID: nf-b5b7c2b9f1f43a03ac9844a675d060a7-98e1e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d187c71d45168f2a ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:02:59 PM
Completed: Mar 02, 2026 3:03:34 PM
Total Duration: 34s

Phases

Queue: 25s
Execution: 9s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: ae/4fa23f
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/4fa23fdd4398594faaa42015f180d3
Native ID: nf-ae4fa23fdd4398594faaa42015f180d3-6908d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0fd708a71cb0bb258 ( spot)

Runtime

Submitted: Mar 02, 2026 3:02:10 PM
Completed: Mar 02, 2026 3:02:26 PM
Total Duration: 15s

Phases

Queue: 6s
Execution: 9s
Stage/Unstage: 0s