NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (869_C9D-T1-TDNA-1_B23MHJYLT4_1;SNP_GRCh38_hg38_wChr) - autorun-sarek-cgp_dna_ssf-chunk1 - Workflow Tracker

Runs
autorun-sare.._ssf-chunk1
Tasks
BCFTOOLS_MPILEUP (869_C9D-T1-TDNA-1_B23MHJYLT4_1;SNP_GRCh38_hg38_wChr)

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Task Info

Status: failed
Hash: 1fd8dcc48eb7
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
Tag: 869_C9D-T1-TDNA-1_B23MHJYLT4_1;SNP_GRCh38_hg38_wChr
Attempts: 3

Attempt 3

Execution

Status: failed
Hash: 08/1eda35
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/1eda3523864c02e1c1496a5382f1a1
Native ID: nf-081eda3523864c02e1c1496a5382f1a1-28fbb

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Mar 02, 2026 3:05:47 PM
Completed: Mar 02, 2026 3:06:00 PM
Total Duration: 12s

Phases

Queue: 4s
Execution: 8s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 07/9354dd
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/9354ddb5742b8aeebd4f27c714c7c8
Native ID: nf-079354ddb5742b8aeebd4f27c714c7c8-f2354

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d94305c07c7ec0b3 ( on-demand)

Runtime

Submitted: Mar 02, 2026 3:03:18 PM
Completed: Mar 02, 2026 3:03:59 PM
Total Duration: 40s

Phases

Queue: 31s
Execution: 9s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 1c/23eb96
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/23eb968c085792b067f0b53af73b0b
Native ID: nf-1c23eb968c085792b067f0b53af73b0b-0fcbe

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 2.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-083956fcccb1525e6 ( spot)

Runtime

Submitted: Mar 02, 2026 3:02:16 PM
Completed: Mar 02, 2026 3:02:36 PM
Total Duration: 19s

Phases

Queue: 7s
Execution: 12s
Stage/Unstage: 0s