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rna_s1811.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0032/A2327GFLT3/nfcore_rnafusion_100M_starfusionFilter__cd574a28--20260225-001000/fusioninspector/rna_s1811.FusionInspector.fusions.abridged.tsv
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27.4 KB
Workflow Run
cgp_rna_exp0032_cd574a28
Published
Feb 26, 2026 1:36 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
EML4--ALK 90 7 90.00 2.82 EML4^ENSG00000143924.19 20963 chr2:42304551:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 1078 18 0.09 5.16 GT 1.8256 AG 1.9086 0.9615 2703 0
EML4--ALK 76 4 76.00 0.80 EML4^ENSG00000143924.19 3621 chr2:42245687:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 1133 18 0.07 4.26 GT 1.9219 AG 1.9086 0.7955 216 0
EML4--ALK 66 4 66.00 0.69 EML4^ENSG00000143924.19 18552 chr2:42301392:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 446 18 0.16 3.74 GT 1.2310 AG 1.9086 0.6908 1107 0
EML4--ALK 62 4 62.00 0.65 EML4^ENSG00000143924.19 8300 chr2:42264731:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 326 18 0.20 3.53 GT 1.7819 AG 1.9086 0.6489 1031 0
EML4--ALK 40 9 40.00 2.81 EML4^ENSG00000143924.19 25702 chr2:42325554:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 675 18 0.07 2.63 GT 1.7056 AG 1.9086 0.4434 1160 0
EML4--ALK 30 4 30.00 0.31 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 392 18 0.09 1.84 GT 1.6895 AG 1.9086 0.314 1550 0
EML4--ALK 13 9 13.00 0.91 EML4^ENSG00000143924.19 25702 chr2:42325554:+ ALK^ENSG00000171094.18 34064 chr2:29921586:- ONLY_REF_SPLICE YES 675 0 0.03 23.00 GT 1.7056 GC 1.9329 0.1441 667 0
TMPRSS2--ERG 86 18 86.00 11.97 TMPRSS2^ENSG00000184012.14 10965 chr21:41488394:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 2 11 35.00 8.75 GT 1.8892 AG 1.9656 1.0148 5157 0
TMPRSS2--ERG 56 15 56.00 5.64 TMPRSS2^ENSG00000184012.14 8765 chr21:41494356:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 39 161 1.80 0.44 GT 1.9656 AG 1.9899 0.6385 3038 0
TMPRSS2--ERG 55 0 55.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 39981 chr21:38402637:- ONLY_REF_SPLICE YES 42 307 1.30 0.18 GT 1.6895 AG 1.4295 0.5697 1435 0
TMPRSS2--ERG 52 1 52.00 0.20 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 51 11 1.04 4.50 GT 1.9656 AG 1.9656 0.5407 2413 0
TMPRSS2--ERG 48 1 48.00 0.19 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 51 161 0.96 0.31 GT 1.9656 AG 1.9899 0.4992 1634 0
TMPRSS2--ERG 39 0 39.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 37757 chr21:38423561:- ONLY_REF_SPLICE YES 42 158 0.93 0.25 GT 1.6895 AG 1.9899 0.404 1057 0
TMPRSS2--ERG 35 0 35.00 0.00 TMPRSS2^ENSG00000184012.14 7359 chr21:41498119:- ERG^ENSG00000157554.19 39981 chr21:38402637:- ONLY_REF_SPLICE YES 51 307 0.69 0.12 GT 1.9656 AG 1.4295 0.3625 1893 0
TMPRSS2--ERG 30 0 30.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 42 161 0.72 0.19 GT 1.6895 AG 1.9899 0.3108 1071 0
TMPRSS2--ERG 18 0 18.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 42 11 0.44 1.58 GT 1.6895 AG 1.9656 0.1865 350 0
EWSR1--ERG 81 5 81.00 3.21 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ ERG^ENSG00000157554.19 44967 chr21:38383923:- ONLY_REF_SPLICE YES 1548 263 0.06 0.33 GT 1.8062 AG 1.9086 0.8723 1191 0
EWSR1--ERG 44 6 44.00 2.79 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ ERG^ENSG00000157554.19 43919 chr21:38391042:- ONLY_REF_SPLICE YES 1548 272 0.03 0.19 GT 1.8062 AG 1.8062 0.4847 1677 0
KIAA1549--BRAF 75 28 75.00 12.56 KIAA1549^ENSG00000122778.10 24718 chr7:138840133:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 69 746 1.49 0.14 GT 1.4566 AG 1.9329 0.907 2455 0
KIAA1549--BRAF 69 5 69.00 0.98 KIAA1549^ENSG00000122778.10 14152 chr7:138894342:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 154 746 0.48 0.10 GT 1.8256 AG 1.9329 0.7249 96 1
KIAA1549--BRAF 62 24 62.00 6.72 KIAA1549^ENSG00000122778.10 21367 chr7:138861139:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 178 746 0.49 0.12 GT 1.9086 AG 1.9329 0.7118 1130 0
KIAA1549--BRAF 63 15 63.00 3.27 KIAA1549^ENSG00000122778.10 20049 chr7:138867975:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 248 746 0.32 0.11 GT 1.9656 AG 1.9329 0.6865 1530 0
KIAA1549--BRAF 62 12 62.00 2.41 KIAA1549^ENSG00000122778.10 18895 chr7:138869538:- BRAF^ENSG00000157764.14 50867 chr7:140787584:- ONLY_REF_SPLICE YES 277 746 0.27 0.10 GT 1.5219 AG 1.9329 0.6672 2474 0
KIAA1549--BRAF 55 1 55.00 0.14 KIAA1549^ENSG00000122778.10 17671 chr7:138871157:- BRAF^ENSG00000157764.14 53331 chr7:140783157:- ONLY_REF_SPLICE YES 199 1013 0.28 0.06 GT 1.4256 AG 1.9656 0.5712 2412 0
KIAA1549--BRAF 47 9 47.00 1.92 KIAA1549^ENSG00000122778.10 21367 chr7:138861139:- BRAF^ENSG00000157764.14 53331 chr7:140783157:- ONLY_REF_SPLICE YES 178 1013 0.32 0.06 GT 1.9086 AG 1.9656 0.5068 3575 0
FGFR3--TACC3 67 5 67.00 1.93 FGFR3^ENSG00000068078.20 11811 chr4:1808867:+ TACC3^ENSG00000013810.20 22437 chr4:1731172:+ ONLY_REF_SPLICE YES 4 1334 14.60 0.05 CC 1.9899 AG 1.9086 0.714 1818 0
FGFR3--TACC3 47 6 47.00 2.38 FGFR3^ENSG00000068078.20 11812 chr4:1808868:+ TACC3^ENSG00000013810.20 19989 chr4:1727709:+ INCL_NON_REF_SPLICE YES 4 714 10.80 0.08 CT 1.9656 GC 1.8323 0.5116 272 0
FGFR3--TACC3 39 3 39.00 0.52 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 25486 chr4:1737598:+ ONLY_REF_SPLICE YES 16 780 2.53 0.06 GT 1.8892 AG 1.6402 0.4094 91 1
FGFR3--TACC3 36 4 36.00 0.72 FGFR3^ENSG00000068078.20 11811 chr4:1808867:+ TACC3^ENSG00000013810.20 23567 chr4:1735273:+ ONLY_REF_SPLICE YES 4 1077 8.20 0.04 CC 1.9899 AG 1.8892 0.3804 2289 0
FGFR3--TACC3 35 3 35.00 0.46 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 24025 chr4:1735731:+ ONLY_REF_SPLICE YES 16 960 2.29 0.04 GT 1.8892 AG 1.9656 0.3673 1548 0
FGFR2--TACC3 64 6 64.00 6.00 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 41679 chr4:1727708:+ ONLY_REF_SPLICE YES 8 685 7.89 0.10 GT 1.8323 AG 1.7056 0.7251 1192 0
FGFR2--TACC3 28 0 28.00 0.00 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 47177 chr4:1737598:+ ONLY_REF_SPLICE YES 8 779 3.22 0.04 GT 1.8323 AG 1.6402 0.29 1795 0
FGFR2--TACC3 14 0 14.00 0.00 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- TACC3^ENSG00000013810.20 49281 chr4:1739702:+ ONLY_REF_SPLICE YES 8 1103 1.67 0.01 GT 1.8323 AG 1.7819 0.145 1188 0
TRIM24--BRAF 59 20 59.00 12.46 TRIM24^ENSG00000122779.18 14326 chr7:138567654:+ BRAF^ENSG00000157764.14 47905 chr7:140787584:- ONLY_REF_SPLICE YES 285 746 0.28 0.11 GT 1.6402 AG 1.9329 0.7403 1536 0
TRIM24--BRAF 53 5 53.00 1.60 TRIM24^ENSG00000122779.18 10753 chr7:138551180:+ BRAF^ENSG00000157764.14 50369 chr7:140783157:- ONLY_REF_SPLICE YES 469 1011 0.13 0.06 GT 1.7819 AG 1.9656 0.5656 1323 0
TRIM24--BRAF 39 17 39.00 5.95 TRIM24^ENSG00000122779.18 12022 chr7:138554966:+ BRAF^ENSG00000157764.14 47905 chr7:140787584:- ONLY_REF_SPLICE YES 346 746 0.16 0.08 GT 1.7819 AG 1.9329 0.4656 1733 0
PML--RARA 63 3 63.00 1.54 PML^ENSG00000140464.20 10929 chr15:74033414:+ RARA^ENSG00000131759.18 33708 chr17:40348316:+ ONLY_REF_SPLICE YES 1537 696 0.04 0.10 GT 1.3383 AG 1.9086 0.6686 1296 0
PML--RARA 55 8 55.00 6.46 PML^ENSG00000140464.20 12045 chr15:74034530:+ RARA^ENSG00000131759.18 33708 chr17:40348316:+ ONLY_REF_SPLICE YES 1731 696 0.04 0.09 GT 1.9329 AG 1.9086 0.6366 183 0
SND1--BRAF 62 6 62.00 6.00 SND1^ENSG00000197157.11 24964 chr7:127991056:+ BRAF^ENSG00000157764.14 55981 chr7:140787584:- ONLY_REF_SPLICE YES 1461 746 0.05 0.09 GT 1.8295 AG 1.9329 0.7044 1527 0
AFAP1--NTRK2 61 9 61.00 9.00 AFAP1^ENSG00000196526.10 21829 chr4:7778762:- NTRK2^ENSG00000148053.17 46551 chr9:84751986:+ ONLY_REF_SPLICE YES 10 200 6.45 0.35 GT 1.8323 AG 1.7056 0.7251 1214 0
BRD4--NUTM1 61 2 61.00 2.00 BRD4^ENSG00000141867.19 17859 chr19:15254152:- NUTM1^ENSG00000184507.16 36973 chr15:34347969:+ ONLY_REF_SPLICE YES 1629 7 0.04 8.00 GT 1.7465 AG 1.9329 0.6526 762 0
TRIM33--RET 61 2 61.00 2.00 TRIM33^ENSG00000197323.12 15635 chr1:114406941:- RET^ENSG00000165731.20 43081 chr10:43116584:+ ONLY_REF_SPLICE YES 386 7 0.17 8.00 GT 1.8892 AG 1.8323 0.6526 1717 0
TPM3--NTRK1 52 9 52.00 4.78 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 41882 chr1:156874383:+ ONLY_REF_SPLICE YES 2721 6 0.02 8.86 GT 1.9329 AG 1.5058 0.5881 168 0
TPM3--NTRK1 50 6 50.00 2.04 TPM3^ENSG00000143549.21 13140 chr1:154170649:- NTRK1^ENSG00000198400.13 41882 chr1:156874383:+ ONLY_REF_SPLICE YES 3306 6 0.02 8.14 GT 1.7968 AG 1.5058 0.539 276 0
TPM3--NTRK1 44 5 44.00 1.39 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 2721 19 0.02 2.50 GT 1.9329 AG 1.6895 0.4702 355 0
TPM3--NTRK1 37 4 37.00 0.79 TPM3^ENSG00000143549.21 13140 chr1:154170649:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 3306 19 0.01 2.10 GT 1.7968 AG 1.6895 0.3915 417 0
PRKAR1A--RET 53 1 53.00 1.00 PRKAR1A^ENSG00000108946.15 8644 chr17:68525912:+ RET^ENSG00000165731.20 32187 chr10:43116584:+ ONLY_REF_SPLICE YES 1303 7 0.04 6.88 GT 1.9219 AG 1.8323 0.5594 2585 0
NPM1--ALK 50 0 50.00 0.00 NPM1^ENSG00000181163.14 5684 chr5:171391799:+ ALK^ENSG00000171094.18 43573 chr2:29223528:- ONLY_REF_SPLICE YES 4848 18 0.01 2.68 GT 1.9656 AG 1.9086 0.5179 1186 0
NPM1--ALK 8 1 8.00 1.00 NPM1^ENSG00000181163.14 6701 chr5:171392816:+ ALK^ENSG00000171094.18 18634 chr2:29921586:- ONLY_REF_SPLICE YES 4726 0 0.00 10.00 GT 1.9329 GC 1.9329 0.0933 33 1
NSD3--NUTM1 49 1 49.00 1.00 NSD3^ENSG00000147548.17 11443 chr8:38326730:- NUTM1^ENSG00000184507.16 43858 chr15:34347969:+ ONLY_REF_SPLICE YES 764 7 0.07 6.38 GT 1.9656 AG 1.9329 0.518 1178 0
CCDC6--RET 47 2 47.00 2.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 726 7 0.07 6.25 GT 1.8892 AG 1.8323 0.5076 2092 0
TPM3--ALK 46 0 46.00 0.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ALK^ENSG00000171094.18 54468 chr2:29223528:- ONLY_REF_SPLICE YES 2723 18 0.02 2.47 GT 1.9329 AG 1.9086 0.4765 949 0
TPM3--ALK 7 1 7.00 1.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ALK^ENSG00000171094.18 29529 chr2:29921586:- ONLY_REF_SPLICE YES 2723 0 0.00 9.00 GT 1.9329 GC 1.9329 0.0829 66 1
ETV6--NTRK3 44 7 44.00 7.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 36490 chr15:88126373:- ONLY_REF_SPLICE YES 1212 1 0.04 26.00 GT 1.7819 AG 1.9656 0.5283 3007 0
SLC34A2--ROS1 45 2 45.00 2.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 53638 chr6:117337340:- ONLY_REF_SPLICE YES 0 6 48.00 6.86 GT 1.8892 AG 1.7465 0.4868 2262 0
SLC34A2--ROS1 28 0 28.00 0.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 56834 chr6:117326414:- ONLY_REF_SPLICE YES 0 174 29.00 0.17 GT 1.8892 AG 1.7232 0.29 183 0
ETV6--ABL1 45 0 45.00 0.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ ABL1^ENSG00000097007.19 25631 chr9:130854064:+ ONLY_REF_SPLICE YES 1213 307 0.04 0.15 GT 1.7819 AG 1.8892 0.4661 1152 0
FGFR1--TACC1 41 10 41.00 10.00 FGFR1^ENSG00000077782.21 27563 chr8:38413918:- TACC1^ENSG00000147526.20 55170 chr8:38836162:+ ONLY_REF_SPLICE YES 701 2121 0.07 0.02 GT 1.8892 AG 1.7465 0.5283 301 0
FGFR2--BICC1 41 0 41.00 0.00 FGFR2^ENSG00000066468.23 29010 chr10:121483698:- BICC1^ENSG00000122870.12 40783 chr10:58702074:+ ONLY_REF_SPLICE YES 8 0 4.67 42.00 GT 1.8323 AG 1.7968 0.4247 1673 0
COL1A1--PDGFB 40 1 40.00 1.00 COL1A1^ENSG00000108821.14 16097 chr17:50186317:- PDGFB^ENSG00000100311.17 25647 chr22:39235874:- ONLY_REF_SPLICE YES 31 12 1.31 3.23 GT 1.9899 AG 1.7968 0.4247 1271 0
SDC4--ROS1 39 2 39.00 1.05 SDC4^ENSG00000124145.6 2239 chr20:45335782:- ROS1^ENSG00000047936.11 42328 chr6:117337340:- ONLY_REF_SPLICE YES 155 6 0.27 6.00 GT 1.8892 AG 1.7465 0.4149 2052 0
SDC4--ROS1 28 10 28.00 8.54 SDC4^ENSG00000124145.6 4485 chr20:45330366:- ROS1^ENSG00000047936.11 42328 chr6:117337340:- ONLY_REF_SPLICE YES 119 6 0.33 5.57 GT 1.7968 AG 1.7465 0.3785 1426 0
SDC4--ROS1 25 1 25.00 0.41 SDC4^ENSG00000124145.6 4485 chr20:45330366:- ROS1^ENSG00000047936.11 45524 chr6:117326414:- ONLY_REF_SPLICE YES 119 174 0.23 0.15 GT 1.7968 AG 1.7232 0.2632 1743 0
PAX8--PPARG 36 5 36.00 5.00 PAX8^ENSG00000125618.18 10865 chr2:113227155:- PPARG^ENSG00000132170.23 26778 chr3:12312380:+ ONLY_REF_SPLICE YES 84 1 0.49 21.00 GT 1.8295 AG 1.8295 0.4247 3874 0
ETV6--NTRK2 36 3 36.00 3.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK2^ENSG00000148053.17 50653 chr9:84934162:+ ONLY_REF_SPLICE YES 1215 79 0.03 0.50 GT 1.7819 AG 1.9329 0.404 1252 0
TPR--NTRK1 36 1 36.00 1.00 TPR^ENSG00000047410.14 8773 chr1:186360765:- NTRK1^ENSG00000198400.13 62972 chr1:156874571:+ ONLY_REF_SPLICE YES 736 19 0.05 1.90 GT 1.6402 AG 1.6895 0.3833 2068 0
BRD3--NUTM1 36 0 36.00 0.00 BRD3^ENSG00000169925.17 12605 chr9:134040034:- NUTM1^ENSG00000184507.16 28100 chr15:34353736:+ ONLY_REF_SPLICE YES 218 12 0.17 2.85 GT 1.5219 AG 1.7819 0.3729 1018 0
CD74--ROS1 32 11 32.00 8.85 CD74^ENSG00000019582.16 7107 chr5:150402563:- ROS1^ENSG00000047936.11 44344 chr6:117337340:- ONLY_REF_SPLICE YES 11000 6 0.00 6.29 GT 1.8892 AG 1.7465 0.4232 1566 0
CD74--ROS1 30 4 30.00 1.43 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 44344 chr6:117337340:- ONLY_REF_SPLICE YES 11196 6 0.00 5.00 GT 1.7819 AG 1.7465 0.3256 1261 0
CD74--ROS1 20 2 20.00 0.36 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 47540 chr6:117326414:- ONLY_REF_SPLICE YES 11196 174 0.00 0.13 GT 1.7819 AG 1.7232 0.2109 1406 0
CD74--ROS1 20 2 20.00 0.36 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 11196 175 0.00 0.13 GT 1.7819 AG 1.7465 0.2109 2407 0
CD74--NRG1 34 1 34.00 1.00 CD74^ENSG00000019582.16 7107 chr5:150402563:- NRG1^ENSG00000157168.20 39090 chr8:32756403:+ ONLY_REF_SPLICE YES 10997 0 0.00 36.00 GT 1.8892 AG 1.3383 0.3626 1916 0
NAB2--STAT6 32 9 32.00 9.00 NAB2^ENSG00000166886.13 4786 chr12:57093598:+ STAT6^ENSG00000166888.12 22861 chr12:57099440:- ONLY_REF_SPLICE YES 942 1718 0.04 0.02 GT 1.8295 AG 1.9656 0.4247 579 0
CLTC--ALK 32 0 32.00 0.00 CLTC^ENSG00000141367.12 31398 chr17:59690711:+ ALK^ENSG00000171094.18 63682 chr2:29223528:- ONLY_REF_SPLICE YES 1243 18 0.03 1.74 GT 1.8892 AG 1.9086 0.3315 738 0
CLTC--ALK 6 1 6.00 1.00 CLTC^ENSG00000141367.12 31398 chr17:59690711:+ ALK^ENSG00000171094.18 38743 chr2:29921586:- ONLY_REF_SPLICE YES 1243 0 0.01 8.00 GT 1.8892 GC 1.9329 0.0726 2756 0
KIF5B--ALK 32 0 32.00 0.00 KIF5B^ENSG00000170759.11 16251 chr10:32021226:- ALK^ENSG00000171094.18 52570 chr2:29223528:- ONLY_REF_SPLICE YES 791 18 0.04 1.74 GC 1.7465 AG 1.9086 0.3315 113 0
KIF5B--ALK 6 0 6.00 0.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- ALK^ENSG00000171094.18 27631 chr2:29921586:- ONLY_REF_SPLICE YES 632 0 0.01 7.00 GT 1.9656 GC 1.9329 0.0622 636 0
MGA--NUTM1 32 0 32.00 0.00 MGA^ENSG00000174197.16 31460 chr15:41762362:+ NUTM1^ENSG00000184507.16 46224 chr15:34347969:+ ONLY_REF_SPLICE YES 155 7 0.21 4.12 GT 1.5656 AG 1.9329 0.3315 341 0
FUS--ERG 31 1 31.00 1.00 FUS^ENSG00000089280.19 11302 chr16:31191609:+ ERG^ENSG00000157554.19 24350 chr21:38445617:- INCL_NON_REF_SPLICE YES 0 20 33.00 1.57 GT 1.1589 AG 1.9219 0.3315 3611 0
ETV6--PDGFRB 31 0 31.00 0.00 ETV6^ENSG00000139083.11 18918 chr12:11895377:+ PDGFRB^ENSG00000113721.14 31979 chr5:150129968:- ONLY_REF_SPLICE YES 0 88 32.00 0.36 TA 1.5656 AG 1.9329 0.3211 2865 0
EWSR1--FLI1 30 3 30.00 1.84 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 37165 chr11:128805366:+ ONLY_REF_SPLICE YES 1551 709 0.02 0.05 GT 1.8062 AG 1.7819 0.3299 1466 0
EWSR1--FLI1 11 3 11.00 0.67 EWSR1^ENSG00000182944.18 11554 chr22:29287134:+ FLI1^ENSG00000151702.17 34609 chr11:128781958:+ ONLY_REF_SPLICE YES 1551 651 0.01 0.02 GT 1.8062 AG 1.8256 0.1208 995 0
EWSR1--FLI1 8 3 8.00 0.49 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ FLI1^ENSG00000151702.17 33405 chr11:128772782:+ ONLY_REF_SPLICE YES 1 615 6.00 0.02 GT 1.3996 AG 1.8892 0.088 692 0
TRIM24--NTRK2 30 1 30.00 1.00 TRIM24^ENSG00000122779.18 16636 chr7:138573642:+ NTRK2^ENSG00000148053.17 51924 chr9:84861040:+ ONLY_REF_SPLICE YES 391 77 0.08 0.41 GT 1.8892 AG 1.7232 0.3212 1039 0
TBL1XR1--TP63 29 1 29.00 1.00 TBL1XR1^ENSG00000177565.18 31430 chr3:177032971:- TP63^ENSG00000073282.14 49105 chr3:189808272:+ ONLY_REF_SPLICE YES 433 93 0.07 0.33 GT 1.9329 AG 1.7056 0.3108 1327 0
QKI--NTRK2 29 0 29.00 0.00 QKI^ENSG00000112531.17 13018 chr6:163563719:+ NTRK2^ENSG00000148053.17 60757 chr9:84948462:+ ONLY_REF_SPLICE YES 700 88 0.04 0.34 GT 1.7819 AG 1.9329 0.3004 1837 0
FUS--DDIT3 28 0 28.00 0.00 FUS^ENSG00000089280.19 11298 chr16:31191605:+ DDIT3^ENSG00000175197.12 15431 chr12:57520514:- INCL_NON_REF_SPLICE YES 0 3 29.00 7.25 TT 1.7056 AG 1.9329 0.29 1673 0
NCOA4--RET 26 7 26.00 7.00 NCOA4^ENSG00000266412.6 11059 chr10:46010223:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 667 7 0.05 4.25 GT 1.5656 AG 1.8323 0.3418 5099 0
EZR--ROS1 26 6 26.00 6.00 EZR^ENSG00000092820.18 12698 chr6:158769326:- ROS1^ENSG00000047936.11 50185 chr6:117337340:- ONLY_REF_SPLICE YES 1614 6 0.02 4.71 GT 1.7465 AG 1.7465 0.3315 1897 0
EZR--ROS1 8 0 8.00 0.00 EZR^ENSG00000092820.18 11260 chr6:158770764:- ROS1^ENSG00000047936.11 53381 chr6:117326414:- ONLY_REF_SPLICE YES 271 174 0.03 0.05 GT 1.2867 AG 1.7232 0.0829 75 1
TCF3--PBX1 26 0 26.00 0.00 TCF3^ENSG00000071564.17 14545 chr19:1615686:- PBX1^ENSG00000185630.19 46234 chr1:164792494:+ ONLY_REF_SPLICE YES 789 3 0.03 6.75 GT 1.4295 AG 1.8892 0.2693 1294 0
TCF3--PBX1 25 0 25.00 0.00 TCF3^ENSG00000071564.17 13409 chr19:1619111:- PBX1^ENSG00000185630.19 46234 chr1:164792494:+ ONLY_REF_SPLICE YES 943 3 0.03 6.50 GT 1.9219 AG 1.8892 0.259 1715 0
RUNX1--RUNX1T1 25 3 25.00 2.73 RUNX1^ENSG00000159216.19 35856 chr21:34799301:- RUNX1T1^ENSG00000079102.16 47689 chr8:92095171:- ONLY_REF_SPLICE YES 115 3 0.25 7.25 GT 1.8892 AG 1.8892 0.2873 1273 0
RUNX1--RUNX1T1 10 1 10.00 0.27 RUNX1^ENSG00000159216.19 27252 chr21:34880557:- RUNX1T1^ENSG00000079102.16 47689 chr8:92095171:- ONLY_REF_SPLICE YES 227 3 0.05 3.00 GT 1.6895 AG 1.8892 0.1064 1615 0
SLC45A3--ELK4 25 2 25.00 2.00 SLC45A3^ENSG00000158715.6 5142 chr1:205661861:- ELK4^ENSG00000158711.14 13380 chr1:205623891:- ONLY_REF_SPLICE YES 63 300 0.44 0.09 GT 1.5656 AG 1.9656 0.2797 1529 0
HEY1--NCOA2 23 8 23.00 8.00 HEY1^ENSG00000164683.18 2207 chr8:79766651:- NCOA2^ENSG00000140396.13 25820 chr8:70148483:- ONLY_REF_SPLICE YES 111 449 0.29 0.07 GT 1.3996 AG 1.8892 0.3211 1409 0
LPP--HMGA2 25 0 25.00 0.00 LPP^ENSG00000145012.13 33637 chr3:188872763:+ HMGA2^ENSG00000149948.14 53982 chr12:65824483:+ ONLY_REF_SPLICE YES 11 0 2.17 26.00 GT 1.9656 TC 1.8323 0.259 2477 0
KMT2A--SEPTIN9 23 0 23.00 0.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ SEPTIN9^ENSG00000184640.20 63337 chr17:77307141:+ ONLY_REF_SPLICE YES 0 312 24.00 0.08 CA 1.8892 AG 1.7819 0.2382 1560 0
STIL--TAL1 22 1 22.00 1.00 STIL^ENSG00000123473.16 4716 chr1:47304889:- TAL1^ENSG00000162367.11 29830 chr1:47229771:- ONLY_REF_SPLICE YES 211 1 0.11 12.00 GT 1.9329 AG 1.7968 0.2383 2619 0
GOPC--ROS1 20 1 20.00 1.00 GOPC^ENSG00000047932.14 9512 chr6:117566854:- ROS1^ENSG00000047936.11 48343 chr6:117337340:- ONLY_REF_SPLICE YES 308 6 0.07 3.14 GT 1.7968 AG 1.7465 0.2176 1852 0
MYB--NFIB 19 1 19.00 1.00 MYB^ENSG00000118513.19 19078 chr6:135219172:+ NFIB^ENSG00000147862.17 40521 chr9:14120624:- ONLY_REF_SPLICE YES 0 192 21.00 0.11 CT 1.5058 AG 1.8256 0.2072 4763 0
KIF5B--RET 18 4 18.00 2.58 KIF5B^ENSG00000170759.11 18804 chr10:32018316:- RET^ENSG00000165731.20 40089 chr10:43116584:+ ONLY_REF_SPLICE YES 974 7 0.02 2.88 GT 1.5546 AG 1.8323 0.2132 4064 0
KIF5B--RET 17 3 17.00 1.42 KIF5B^ENSG00000170759.11 14629 chr10:32022848:- RET^ENSG00000165731.20 40089 chr10:43116584:+ ONLY_REF_SPLICE YES 783 7 0.03 2.62 GT 1.7819 AG 1.8323 0.1908 1676 0
EWSR1--CREB1 17 0 17.00 0.00 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ CREB1^ENSG00000118260.15 39006 chr2:207577505:+ ONLY_REF_SPLICE YES 1 735 9.00 0.02 GT 1.3996 AG 1.9086 0.1761 255 0
YWHAE--NUTM2B 16 1 16.00 1.00 YWHAE^ENSG00000108953.17 7788 chr17:1354211:- NUTM2B^ENSG00000188199.10 15826 chr10:79706042:+ ONLY_REF_SPLICE YES 1642 198 0.01 0.09 GT 1.8892 AG 1.9656 0.1761 1841 0
ASPSCR1--TFE3 16 0 16.00 0.00 ASPSCR1^ENSG00000169696.16 23677 chr17:82017406:+ TFE3^ENSG00000068323.17 26731 chrX:49043357:- ONLY_REF_SPLICE YES 0 30 17.00 0.55 CG 1.9086 GC 1.9656 0.1657 355 0
RANBP2--ALK 15 3 15.00 3.00 RANBP2^ENSG00000153201.16 15728 chr2:108758548:+ ALK^ENSG00000171094.18 36170 chr2:29921586:- ONLY_REF_SPLICE YES 688 0 0.03 19.00 GT 1.9329 GC 1.9329 0.1865 1252 0
EWSR1--WT1 15 1 15.00 1.00 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ WT1^ENSG00000184937.16 39512 chr11:32392755:- ONLY_REF_SPLICE YES 1 67 8.50 0.25 GT 1.3996 AG 1.8892 0.1658 99 1
FGFR1--PLAG1 14 4 14.00 4.00 FGFR1^ENSG00000077782.21 27569 chr8:38413912:- PLAG1^ENSG00000181690.8 37316 chr8:56211267:- INCL_NON_REF_SPLICE YES 694 1 0.03 9.50 CT 1.9329 AC 1.9899 0.1864 1368 0
EGFR--SEPTIN14 14 3 14.00 3.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 61 17 0.29 1.00 GT 1.8892 AG 1.9899 0.1761 658 0
BCR--ABL1 14 1 14.00 1.00 BCR^ENSG00000186716.21 21553 chr22:23290413:+ ABL1^ENSG00000097007.19 44699 chr9:130854064:+ ONLY_REF_SPLICE YES 279 307 0.06 0.05 GT 1.8892 AG 1.8892 0.1554 503 0
FGFR3--BAIAP2L1 14 0 14.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 16 91 0.88 0.16 GT 1.8892 AG 1.8062 0.145 1171 0
MIER2--LINC01002 14 0 14.00 0.00 MIER2^ENSG00000105556.11 14487 chr19:307119:- LINC01002^ENSG00000282508.2 24512 chr19:239239:- ONLY_REF_SPLICE YES 330 2 0.05 5.00 GT 1.8892 AG 1.8892 0.145 577 0
MIER2--LINC01002 2 0 2.00 0.00 MIER2^ENSG00000105556.11 13069 chr19:308577:- LINC01002^ENSG00000282508.2 24512 chr19:239239:- ONLY_REF_SPLICE YES 321 2 0.01 1.00 GT 1.8892 AG 1.8892 0.0207 1993 0
CDKN2D--WDFY2 13 2 13.00 2.00 CDKN2D^ENSG00000129355.7 3505 chr19:10566460:- WDFY2^ENSG00000139668.9 16506 chr13:51675170:+ ONLY_REF_SPLICE YES 0 105 16.00 0.15 GC 1.9656 AG 1.9086 0.1554 2248 0
TPM3--ROS1 12 2 12.00 2.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- ROS1^ENSG00000047936.11 65630 chr6:117324415:- ONLY_REF_SPLICE YES 2723 175 0.01 0.09 GT 1.9329 AG 1.7465 0.145 2234 0
PTPRK--RSPO3 12 1 12.00 1.00 PTPRK^ENSG00000152894.15 17295 chr6:128184432:- RSPO3^ENSG00000146374.14 55391 chr6:127148648:+ ONLY_REF_SPLICE YES 65 0 0.21 14.00 GT 1.7968 AG 1.9329 0.1347 1434 0
SS18--SSX1 11 2 11.00 2.00 SS18^ENSG00000141380.14 24878 chr18:26016253:- SSX1^ENSG00000126752.8 27879 chrX:48255392:+ ONLY_REF_SPLICE YES 0 0 14.00 14.00 TT 1.3383 CC 1.8295 0.1346 3029 0
KMT2A--AFDN 9 1 9.00 1.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ AFDN^ENSG00000130396.20 59488 chr6:167864551:+ ONLY_REF_SPLICE YES 0 741 11.00 0.01 CA 1.8892 AG 1.8892 0.1036 891 0
DNAJB1--PRKACA 9 0 9.00 0.00 DNAJB1^ENSG00000132002.9 13592 chr19:14516466:- PRKACA^ENSG00000072062.15 25460 chr19:14107409:- ONLY_REF_SPLICE YES 476 2 0.02 3.33 GT 1.9086 AG 1.7819 0.0932 744 0
JAZF1--SUZ12 8 0 8.00 0.00 JAZF1^ENSG00000153814.13 9515 chr7:27895220:- SUZ12^ENSG00000178691.11 20886 chr17:31940286:+ ONLY_REF_SPLICE YES 85 672 0.10 0.01 GT 1.8062 AG 1.8323 0.0829 1663 0
KMT2A--SEPTIN6 8 0 8.00 0.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ SEPTIN6^ENSG00000125354.24 58772 chrX:119675668:- ONLY_REF_SPLICE YES 0 1699 9.00 0.01 CA 1.8892 AG 1.8295 0.0829 1850 0
MIER2--PLPP2 8 0 8.00 0.00 MIER2^ENSG00000105556.11 14487 chr19:307119:- PLPP2^ENSG00000141934.10 25402 chr19:287751:- ONLY_REF_SPLICE YES 33 3 0.26 2.25 GT 1.8892 AG 1.7968 0.0829 596 0
CHCHD7--PLAG1 7 0 7.00 0.00 CHCHD7^ENSG00000170791.18 1152 chr8:56211837:+ PLAG1^ENSG00000181690.8 11176 chr8:56211273:- ONLY_REF_SPLICE YES 198 0 0.04 8.00 GT 1.4566 GC 1.8892 0.0725 90 1
KMT2A--MLLT11 7 0 7.00 0.00 KMT2A^ENSG00000118058.23 54480 chr11:118526836:+ MLLT11^ENSG00000213190.4 58638 chr1:151067223:+ INCL_NON_REF_SPLICE YES 0 78 8.00 0.10 GT 1.9219 AG 1.9656 0.0725 851 0
HMGA2--WIF1 6 2 6.00 2.00 HMGA2^ENSG00000149948.14 24406 chr12:65966291:+ WIF1^ENSG00000156076.10 29296 chr12:65077854:- ONLY_REF_SPLICE YES 0 0 9.00 9.00 TC 1.8892 AG 1.9086 0.0829 1500 0
AC016629.1--RPL23AP82 6 0 6.00 0.00 AC016629.1^ENSG00000269032.1 1199 chr19:58586356:+ RPL23AP82^ENSG00000184319.16 10257 chr22:50798655:+ ONLY_REF_SPLICE YES 0 9 7.00 0.70 GT 1.7819 AG 1.8062 0.0622 10000 0
AC016629.1--RPL23AP82 1 0 1.00 0.00 AC016629.1^ENSG00000269032.1 1199 chr19:58586356:+ RPL23AP82^ENSG00000184319.16 8798 chr22:50788895:+ ONLY_REF_SPLICE YES 0 11 2.00 0.17 GT 1.7819 AG 1.8892 0.0104 10000 0
PRCC--TFE3 6 0 6.00 0.00 PRCC^ENSG00000143294.15 12284 chr1:156800815:+ TFE3^ENSG00000068323.17 15338 chrX:49043357:- ONLY_REF_SPLICE YES 0 30 7.00 0.23 CA 1.8892 GC 1.9656 0.0622 1919 0
ATF1--EWSR1 5 1 5.00 1.00 ATF1^ENSG00000123268.9 11425 chr12:50821162:+ EWSR1^ENSG00000182944.18 14685 chr22:29268268:+ ONLY_REF_SPLICE YES 0 12 7.00 0.54 GC 1.5058 GC 1.8323 0.0622 1487 0
FUS--CREB3L2 5 0 5.00 0.00 FUS^ENSG00000089280.19 11302 chr16:31191609:+ CREB3L2^ENSG00000182158.15 14303 chr7:138002082:- INCL_NON_REF_SPLICE YES 0 2 6.00 2.00 GT 1.1589 AG 1.6895 0.0518 646 0
EWSR1--POU5F1 4 0 4.00 0.00 EWSR1^ENSG00000182944.18 22093 chr22:29300521:+ POU5F1^ENSG00000204531.20 26211 chr6:31170682:- ONLY_REF_SPLICE YES 1 4 2.50 1.00 GT 1.3996 TT 1.9329 0.0414 2260 0
OR2T2--OR2T5 4 0 4.00 0.00 OR2T2^ENSG00000196240.5 3499 chr1:248449392:+ OR2T5^ENSG00000203661.4 10440 chr1:248488579:+ INCL_NON_REF_SPLICE YES 5 0 0.83 5.00 GT 1.6402 AG 1.9899 0.0414 1128 0
PLAG1--CTNNB1 4 0 4.00 0.00 PLAG1^ENSG00000181690.8 13352 chr8:56160909:- CTNNB1^ENSG00000168036.18 19179 chr3:41199505:+ ONLY_REF_SPLICE YES 0 61 5.00 0.08 GA 1.7819 TT 1.9329 0.0414 1626 0
KMT2A--EPS15 3 1 3.00 1.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ EPS15^ENSG00000085832.17 57477 chr1:51519266:- ONLY_REF_SPLICE YES 0 0 5.00 5.00 CA 1.8892 CC 1.2729 0.0415 2208 0
H3-3B--RECQL5 3 0 3.00 0.00 H3-3B^ENSG00000132475.10 5758 chr17:75778810:- RECQL5^ENSG00000108469.15 14019 chr17:75662997:- ONLY_REF_SPLICE YES 2000 414 0.00 0.01 GT 1.8892 AG 1.8256 0.0311 505 0
MAP4K1--CACNA1F 3 0 3.00 0.00 MAP4K1^ENSG00000104814.13 16411 chr19:38597034:- CACNA1F^ENSG00000102001.13 30736 chrX:49226702:- ONLY_REF_SPLICE YES 1076 33 0.00 0.12 GT 1.5656 AG 1.7056 0.0311 1357 0
SET--NUP214 3 0 3.00 0.00 SET^ENSG00000119335.17 10890 chr9:128696396:+ NUP214^ENSG00000126883.17 13895 chr9:131125586:+ ONLY_REF_SPLICE YES 0 0 4.00 4.00 CT 1.4566 GC 1.8892 0.0311 2360 0
AC021851.1--NUP35 2 0 2.00 0.00 AC021851.1^ENSG00000272800.3 2635 chr2:183182680:+ NUP35^ENSG00000163002.13 18024 chr2:183151508:+ ONLY_REF_SPLICE YES 1 119 1.50 0.03 GT 1.8062 AG 1.8256 0.0207 1201 0
AC021851.1--NUP35 1 0 1.00 0.00 AC021851.1^ENSG00000272800.3 2635 chr2:183182680:+ NUP35^ENSG00000163002.13 13860 chr2:183128287:+ ONLY_REF_SPLICE YES 1 199 1.00 0.01 GT 1.8062 AG 1.9219 0.0104 1838 0
AC021851.1--NUP35 1 0 1.00 0.00 AC021851.1^ENSG00000272800.3 3897 chr2:183188763:+ NUP35^ENSG00000163002.13 22700 chr2:183161054:+ ONLY_REF_SPLICE YES 0 126 2.00 0.02 GT 0.9056 AG 1.8892 0.0104 1348 0
AC021851.1--NUP35 1 0 1.00 0.00 AC021851.1^ENSG00000272800.3 2635 chr2:183182680:+ NUP35^ENSG00000163002.13 16966 chr2:183133566:+ ONLY_REF_SPLICE YES 1 108 1.00 0.02 GT 1.8062 AG 1.8062 0.0104 1257 0
KMT2A--ELL 2 0 2.00 0.00 KMT2A^ENSG00000118058.23 54476 chr11:118526832:+ ELL^ENSG00000105656.13 59793 chr19:18472882:- ONLY_REF_SPLICE YES 0 320 3.00 0.01 CA 1.8892 AG 1.8295 0.0207 2357 0
144 rows