Runs
cgp_rna_exp0034_2cae617
Processes
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Processes
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NFCORE_RNAFUSION:GENERATE_SAMPLE_TYPE_MAP
1
DEMULTIPLEX:BCLCONVERT
8
DEMULTIPLEX:FLOWCELL_QC
1
DEMULTIPLEX:AGGREGATE_DEMUX_STATS
1
DEMULTIPLEX:CAT_FASTQ
96
DEMULTIPLEX:SAMPLESHEET_FROM_MERGED
1
RNAFUSION:FASTQC
96
15
TRIM_WORKFLOW:FASTP
96
33
TRIM_WORKFLOW:FASTQC_FOR_FASTP
96
3
RNAFUSION:KALLISTO_INDEX
1
RNAFUSION:KALLISTO_QUANT
96
4
RNAFUSION:KALLISTO_TO_TX2GENE_QC
96
RNAFUSION:KALLISTO_TO_MULTIQC
96
RNAFUSION:GTF2BED
1
FASTQ_ALIGN_STAR:STAR_ALIGNMENT
96
1
FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT
96
1
RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM
96
RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM
96
ARRIBA_WORKFLOW:ARRIBA
96
ARRIBA_WORKFLOW:ARRIBA_FILTER
96
STARFUSION_WORKFLOW:STARFUSION
96
94
STARFUSION_WORKFLOW:STARFUSION_FILTER
96
FUSIONREPORT_WORKFLOW:FUSIONREPORT
96
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR
42
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV
42
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT
42
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION
42
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS
96
7
RNAFUSION:CANCER_INTRONS_TO_VCF
96
QC_WORKFLOW:GATK4_MARKDUPLICATES
96
3
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS
96
1
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS
96
BAM_RSEQC:RSEQC_BAMSTAT
96
11
BAM_RSEQC:RSEQC_INNERDISTANCE
96
BAM_RSEQC:RSEQC_INFEREXPERIMENT
96
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION
96
5
BAM_RSEQC:RSEQC_JUNCTIONSATURATION
96
BAM_RSEQC:RSEQC_READDISTRIBUTION
96
20
BAM_RSEQC:RSEQC_READDUPLICATION
96
2
QC_WORKFLOW:SEQTOOL_QC
96
1
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION
96
1
QC_WORKFLOW:SEQTOOL_TO_MULTIQC
96
QC_WORKFLOW:PRESEQ_LCEXTRAP
96
QC_WORKFLOW:PRESEQ_TO_MULTIQC
96
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE
94
1
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES
94
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION
94
RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS
2
RNAFUSION:CONTAMINATION_TO_MULTIQC
94
RNAFUSION:MULTIQC
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV
1
RNAFUSION:MULTIQC_EXTRACT_CONTROLS
1
RNAFUSION:RUN_LEVEL_INTERMEDIATE
1
RNAFUSION:RUN_LEVEL_METRICS
1