Prefix: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338
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/alignments/recalibrated/1029_BNG8-T1-TDNA-1_23K7YCLT4_1/1029_BNG8-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam Mar 01, 2026 5:14 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md.depth.gz Mar 01, 2026 5:14 PM
/reports/raw_qc/seqtool/1029_BBS1-T1-TDNA-1_23K7YCLT4_1/1029_BBS1-T1-TDNA-1_23K7YCLT4_1.md/1029_BBS1-T1-TDNA-1_23K7YCLT4_1.md.depth.gz Mar 01, 2026 5:14 PM
/reports/raw_qc/seqtool/1029_8AV-T1-TDNA-1_23K7YCLT4_1/1029_8AV-T1-TDNA-1_23K7YCLT4_1.md/1029_8AV-T1-TDNA-1_23K7YCLT4_1.md.depth.gz Mar 01, 2026 5:12 PM
/alignments/recalibrated/1029_BBS1-T1-TDNA-1_23K7YCLT4_1/1029_BBS1-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam Mar 01, 2026 5:12 PM
/alignments/recalibrated/1029_1G0-T1-TDNA-1_23K7YCLT4_1/1029_1G0-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam Mar 01, 2026 5:12 PM
/alignments/recalibrated/1029_56D-T1-TDNA-1_23K7YCLT4_1/1029_56D-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv Mar 01, 2026 5:12 PM
/reports/postdedup_qc.json Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md.depth.gz.tbi Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/full_bed.bed Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv Mar 01, 2026 5:12 PM
/reports/raw_qc/seqtool/1029_5O3-T1-TDNA-1_23K7YCLT4_1/1029_5O3-T1-TDNA-1_23K7YCLT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv Mar 01, 2026 5:12 PM
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