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Filename
FFPE_V4_0001_RNA_0005_23KMKGLT4_18.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0005_23KMKGLT4_18.FusionInspector.fusions.abridged.tsv
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5.1 KB
Workflow Run
dev_rna_exp0001R_2cae617
Published
May 16, 2026 6:16 AM

Content

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 3431 4 3431.00 4.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 44 1821 76.36 1.89 GT 1.8892 AG 1.7819 11.6752 627 0
FGFR3--TACC3 6 2 6.00 0.00 FGFR3^ENSG00000068078.20 9874 chr4:1806930:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 94 1779 0.09 0.01 CG 1.9219 AG 1.7819 0.0204 632 0
TMPRSS2--ERG 2964 0 2964.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 2 37 988.33 78.03 GT 1.6895 AG 1.9219 10.0743 1104 0
TPM3--NTRK1 1023 5 1023.00 4.99 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 5473 13 0.19 73.50 GT 1.9329 AG 1.6895 3.4941 355 0
TPM3--NTRK1 3 5 3.00 0.01 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42079 chr1:156874580:+ INCL_NON_REF_SPLICE YES 5473 26 0.00 0.33 GT 1.9329 CA 1.9329 0.0102 364 0
ETV6--NTRK3 978 1 978.00 1.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 1732 10 0.57 89.09 GT 1.7819 AG 1.9656 3.3275 1252 0
FGFR3--BAIAP2L1 906 1 906.00 1.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 45 32 19.74 27.52 GT 1.8892 AG 1.8062 3.0828 1171 0
FGFR3--BAIAP2L1 4 1 4.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16962 chr7:98362397:- INCL_NON_REF_SPLICE YES 45 55 0.13 0.11 GT 1.8892 AA 1.9086 0.0136 1137 0
LMNA--NTRK1 889 12 889.00 12.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 2591 192 0.35 4.67 GT 1.7465 AG 1.5058 3.0624 947 0
NCOA4--RET 781 0 781.00 0.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 1747 216 0.45 3.60 GT 1.9086 AG 1.8323 2.6545 5144 0
CCDC6--RET 685 1 685.00 0.99 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1364 216 0.50 3.17 GT 1.8892 AG 1.8323 2.3316 2092 0
CCDC6--RET 6 1 6.00 0.01 CCDC6^ENSG00000108091.11 1441 chr10:59906116:- RET^ENSG00000165731.20 31594 chr10:43116591:+ INCL_NON_REF_SPLICE YES 1350 248 0.01 0.03 GC 1.9656 TC 1.9656 0.0204 2099 0
KIF5B--RET 640 5 640.00 5.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1036 12 0.62 49.69 GT 1.9656 AG 1.9656 2.1923 3178 0
EML4--ALK 592 0 592.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 466 10 1.27 53.91 GT 1.6895 AG 1.9086 2.0121 1550 0
SLC34A2--ROS1 482 5 482.00 4.92 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 27 488.00 17.43 GT 1.8892 AG 1.7465 1.655 999 0
SLC34A2--ROS1 8 5 8.00 0.08 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58027 chr6:117324413:- INCL_NON_REF_SPLICE YES 0 36 14.00 0.38 GA 1.7465 AT 1.8892 0.0275 1001 0
CD74--ROS1 461 2 461.00 1.96 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 17825 27 0.03 16.57 GT 1.7819 AG 1.7465 1.5736 2407 0
CD74--ROS1 7 2 7.00 0.03 CD74^ENSG00000019582.16 4987 chr5:150404683:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE NO 19237 0 0.00 10.00 AA 1.8295 TT 1.5301 0.0239 2405 0
CD74--ROS1 3 2 3.00 0.01 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48779 chr6:117324367:- INCL_NON_REF_SPLICE YES 19163 144 0.00 0.04 GG 1.7819 TG 1.7465 0.0102 2384 0
PAX8--PPARG 370 1 370.00 1.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 53 12 6.89 28.62 GT 1.8295 AG 1.9329 1.261 1923 0
PAX8--PPARG 4 0 4.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31480 chr3:12379780:+ INCL_NON_REF_SPLICE YES 53 27 0.09 0.18 GT 1.8295 AT 1.7819 0.0136 1923 0
TFG--NTRK1 346 4 346.00 4.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 1596 13 0.22 25.07 GT 1.9329 AG 1.6895 1.1896 883 0
EGFR--SEPTIN14 331 4 331.00 4.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 3 30 84.00 10.84 GT 1.8892 AG 1.9899 1.1386 658 0
SLC45A3--BRAF 294 0 294.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 925 295.00 0.32 GT 1.5628 AG 1.7465 0.9993 2599 0
TLK2--FAM157A 62 0 62.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ FAM157A^ENSG00000236438.7 45187 chr3:198180755:+ ONLY_REF_SPLICE YES 477 41 0.13 1.50 GT 1.8892 AG 1.8892 0.2107 2733 0
26 rows