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Filename
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1.FusionInspector.fusions.abridged.tsv
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6.9 KB
Workflow Run
dev_rna_exp0002_2cae617
Published
May 16, 2026 7:07 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 6525 18 6525.00 17.93 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 118 3888 54.99 1.68 GT 1.8892 AG 1.7819 22.1787 627 0
FGFR3--TACC3 9 15 9.00 0.02 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 351 3815 0.07 0.01 AC 1.8892 AG 1.7819 0.0306 633 0
FGFR3--TACC3 8 18 8.00 0.02 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 22063 chr4:1730798:+ INCL_NON_REF_SPLICE NO 118 4028 0.23 0.01 GT 1.8892 AG 1.6895 0.0272 1411 0
FGFR3--TACC3 8 18 8.00 0.02 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 25 3959 1.04 0.01 GA 1.8892 TA 1.5219 0.0272 623 0
FGFR3--TACC3 3 15 3.00 0.01 FGFR3^ENSG00000068078.20 9874 chr4:1806930:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 285 3815 0.07 0.00 CG 1.9219 AG 1.7819 0.0102 632 0
FGFR3--TACC3 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9592 chr4:1806648:+ TACC3^ENSG00000013810.20 27592 chr4:1739704:+ INCL_NON_REF_SPLICE YES 2644 3950 0.00 0.00 CG 1.8062 GT 1.5058 0.0102 522 0
TMPRSS2--ERG 4694 0 4694.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 3 134 1173.75 34.78 GT 1.6895 AG 1.9219 15.9114 1104 0
LMNA--NTRK1 1922 13 1922.00 12.98 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 5122 499 0.38 3.87 GT 1.7465 AG 1.5058 6.559 947 0
LMNA--NTRK1 3 12 3.00 0.02 LMNA^ENSG00000160789.23 17735 chr1:156130775:+ NTRK1^ENSG00000198400.13 40292 chr1:156874909:+ INCL_NON_REF_SPLICE YES 5119 554 0.00 0.03 GA 1.8892 TC 1.4566 0.0103 950 0
FGFR3--BAIAP2L1 1893 9 1893.00 9.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 122 58 15.47 32.25 GT 1.8892 AG 1.8062 6.4472 1171 0
ETV6--NTRK3 1893 6 1893.00 6.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3996 38 0.48 48.72 GT 1.7819 AG 1.9656 6.437 1252 0
TPM3--NTRK1 1815 5 1815.00 5.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 10082 55 0.18 32.52 GT 1.9329 AG 1.6895 6.1692 355 0
NCOA4--RET 1419 10 1419.00 9.98 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 3764 796 0.38 1.79 GT 1.9086 AG 1.8323 4.8438 5144 0
NCOA4--RET 3 10 3.00 0.02 NCOA4^ENSG00000266412.6 9076 chr10:46012882:- RET^ENSG00000165731.20 30129 chr10:43116586:+ INCL_NON_REF_SPLICE YES 3734 848 0.00 0.02 TC 1.8323 GA 1.8323 0.0103 5142 0
KIF5B--RET 1369 14 1369.00 13.96 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 2321 22 0.60 60.17 GT 1.9656 AG 1.9656 4.6878 3178 0
KIF5B--RET 4 14 4.00 0.04 KIF5B^ENSG00000170759.11 19979 chr10:32017141:- RET^ENSG00000165731.20 38836 chr10:43114484:+ INCL_NON_REF_SPLICE YES 2320 41 0.01 0.45 TA 1.9656 CC 1.9656 0.0137 3175 0
CCDC6--RET 1188 4 1188.00 4.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 2855 796 0.42 1.50 GT 1.8892 AG 1.8323 4.0406 2092 0
CD74--ROS1 1007 8 1007.00 7.98 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 28100 62 0.04 16.13 GT 1.7819 AG 1.7465 3.4405 2407 0
CD74--ROS1 3 4 3.00 0.01 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48734 chr6:117324412:- INCL_NON_REF_SPLICE YES 28104 101 0.00 0.08 AC 1.9329 TG 1.8892 0.0102 2407 0
CD74--ROS1 3 2 3.00 0.01 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48779 chr6:117324367:- INCL_NON_REF_SPLICE YES 30170 413 0.00 0.01 GG 1.7819 TG 1.7465 0.0102 2384 0
CD74--ROS1 3 0 3.00 0.00 CD74^ENSG00000019582.16 2494 chr5:150407176:- ROS1^ENSG00000047936.11 49895 chr6:117321314:- INCL_NON_REF_SPLICE YES 24645 1760 0.00 0.00 AC 1.9329 CT 1.8295 0.0102 354 0
EML4--ALK 977 0 977.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 1063 75 0.92 12.87 GT 1.6895 AG 1.9086 3.3118 1550 0
EML4--ALK 6 0 6.00 0.00 EML4^ENSG00000143924.19 14412 chr2:42288317:+ ALK^ENSG00000171094.18 59955 chr2:29222576:- INCL_NON_REF_SPLICE YES 1967 480 0.00 0.01 TA 1.3383 TG 1.8892 0.0203 1145 0
SLC34A2--ROS1 865 26 865.00 25.90 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 62 892.00 14.16 GT 1.8892 AG 1.7465 3.0199 999 0
SLC34A2--ROS1 5 17 5.00 0.10 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 0 101 23.00 0.23 GA 1.7465 TG 1.8892 0.0172 1002 0
TFG--NTRK1 731 3 731.00 2.99 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 3316 55 0.22 13.12 GT 1.9329 AG 1.6895 2.488 883 0
TFG--NTRK1 3 3 3.00 0.01 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37656 chr1:156874572:+ INCL_NON_REF_SPLICE YES 3316 59 0.00 0.12 GT 1.9329 GA 1.7056 0.0102 884 0
PAX8--PPARG 715 1 715.00 1.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 166 23 4.29 29.88 GT 1.8295 AG 1.9329 2.4271 1923 0
SLC45A3--BRAF 635 0 635.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 2247 636.00 0.28 GT 1.5628 AG 1.7465 2.1525 2599 0
EGFR--SEPTIN14 612 3 612.00 3.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 22 34 26.78 17.60 GT 1.8892 AG 1.9899 2.0847 658 0
STX16--NPEPL1 226 2 226.00 1.93 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1341 172 0.17 1.32 GT 1.7968 AG 1.8256 0.7726 1940 0
STX16--NPEPL1 8 2 8.00 0.07 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1311 172 0.01 0.06 GT 1.8062 AG 1.8256 0.0273 2729 0
STX16--NPEPL1 3 0 3.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 2417 172 0.00 0.02 GT 1.9899 AG 1.8256 0.0102 1258 0
TLK2--AC240565.1 64 1 64.00 1.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 622 37 0.11 1.74 GT 1.8892 AG 1.8892 0.2203 1734 0
35 rows