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FFPE_V4_0001_RNA_0005_23KMKGLT4_41.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0005_23KMKGLT4_41.FusionInspector.fusions.abridged.tsv
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7.1 KB
Workflow Run
dev_rna_exp0004_2cae617
Published
May 16, 2026 6:10 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 5162 6 5162.00 5.98 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 68 1879 74.91 2.75 GT 1.8892 AG 1.7819 17.5149 627 0
FGFR3--TACC3 7 6 7.00 0.01 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 22063 chr4:1730798:+ INCL_NON_REF_SPLICE NO 68 2023 0.20 0.01 GT 1.8892 AG 1.6895 0.0237 1411 0
FGFR3--TACC3 6 6 6.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 19 1902 0.65 0.01 GA 1.8892 TA 1.5219 0.0203 623 0
FGFR3--TACC3 3 6 3.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE YES 68 1900 0.14 0.01 GT 1.8892 GG 1.7819 0.0102 626 0
FGFR3--TACC3 3 5 3.00 0.00 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 167 1830 0.05 0.00 AC 1.8892 AG 1.7819 0.0102 633 0
TMPRSS2--ERG 4058 0 4058.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 1 58 2029.50 68.80 GT 1.6895 AG 1.9219 13.753 1104 0
TPM3--NTRK1 1566 3 1566.00 3.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 6145 20 0.26 74.76 GT 1.9329 AG 1.6895 5.3175 355 0
FGFR3--BAIAP2L1 1340 2 1340.00 2.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 69 45 19.19 29.20 GT 1.8892 AG 1.8062 4.5482 1171 0
LMNA--NTRK1 1284 5 1284.00 4.99 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 3768 257 0.34 5.00 GT 1.7465 AG 1.5058 4.3685 947 0
LMNA--NTRK1 3 4 3.00 0.01 LMNA^ENSG00000160789.23 17734 chr1:156130774:+ NTRK1^ENSG00000198400.13 40292 chr1:156874909:+ INCL_NON_REF_SPLICE YES 3768 303 0.00 0.03 TG 1.7465 TC 1.4566 0.0102 949 0
ETV6--NTRK3 1228 7 1228.00 6.97 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 1975 11 0.63 103.00 GT 1.7819 AG 1.9656 4.1854 1252 0
ETV6--NTRK3 5 7 5.00 0.03 ETV6^ENSG00000139083.11 11235 chr12:11869967:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- INCL_NON_REF_SPLICE NO 2037 11 0.01 1.08 AG 1.9086 AG 1.9656 0.017 1252 0
CCDC6--RET 1209 2 1209.00 2.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1633 338 0.74 3.58 GT 1.8892 AG 1.8323 4.1042 2092 0
CCDC6--RET 3 2 3.00 0.00 CCDC6^ENSG00000108091.11 1441 chr10:59906116:- RET^ENSG00000165731.20 31594 chr10:43116591:+ INCL_NON_REF_SPLICE YES 1610 373 0.00 0.02 GC 1.9656 TC 1.9656 0.0102 2099 0
NCOA4--RET 1033 4 1033.00 4.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 2223 338 0.47 3.06 GT 1.9086 AG 1.8323 3.5145 5144 0
SLC34A2--ROS1 848 7 848.00 6.90 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 6 35 122.29 23.78 GT 1.8892 AG 1.7465 2.8974 999 0
SLC34A2--ROS1 7 7 7.00 0.06 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 6 51 2.14 0.29 GA 1.7465 TG 1.8892 0.0239 1002 0
SLC34A2--ROS1 6 6 6.00 0.04 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 6 61 1.86 0.21 GA 1.7465 AT 1.9086 0.0204 1004 0
SLC34A2--ROS1 5 0 5.00 0.00 SLC34A2^ENSG00000157765.13 6007 chr4:25664253:+ ROS1^ENSG00000047936.11 60242 chr6:117320033:- INCL_NON_REF_SPLICE YES 388 1094 0.02 0.01 GA 1.5301 TA 1.8062 0.0169 1827 0
KIF5B--RET 828 7 828.00 7.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1243 11 0.67 69.67 GT 1.9656 AG 1.9656 2.8299 3178 0
KIF5B--RET 4 0 4.00 0.00 KIF5B^ENSG00000170759.11 19884 chr10:32017236:- RET^ENSG00000165731.20 38861 chr10:43114509:+ INCL_NON_REF_SPLICE YES 1729 76 0.00 0.06 GT 1.8295 CG 1.9086 0.0136 3252 0
EML4--ALK 729 0 729.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 527 37 1.38 19.21 GT 1.6895 AG 1.9086 2.4707 1550 0
CD74--ROS1 698 4 698.00 3.95 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 19644 36 0.04 19.00 GT 1.7819 AG 1.7465 2.379 2407 0
CD74--ROS1 3 4 3.00 0.02 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 19655 38 0.00 0.21 AC 1.9329 GA 1.8295 0.0103 2408 0
CD74--ROS1 3 4 3.00 0.02 CD74^ENSG00000019582.16 4987 chr5:150404683:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE NO 21119 0 0.00 8.00 AA 1.8295 TT 1.5301 0.0103 2405 0
CD74--ROS1 4 0 4.00 0.00 CD74^ENSG00000019582.16 4565 chr5:150405105:- ROS1^ENSG00000047936.11 51041 chr6:117319940:- INCL_NON_REF_SPLICE YES 16752 1021 0.00 0.00 TG 1.6895 TT 1.5656 0.0136 753 0
CD74--ROS1 3 3 3.00 0.01 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48734 chr6:117324412:- INCL_NON_REF_SPLICE YES 19655 52 0.00 0.13 AC 1.9329 TG 1.8892 0.0102 2407 0
TFG--NTRK1 523 0 523.00 0.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 1740 20 0.30 24.95 GT 1.9329 AG 1.6895 1.7725 883 0
SLC45A3--BRAF 411 0 411.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 2 1165 137.33 0.35 GT 1.5628 AG 1.7465 1.3929 2599 0
EGFR--SEPTIN14 392 2 392.00 2.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 5 21 65.83 17.95 GT 1.8892 AG 1.9899 1.3353 658 0
PAX8--PPARG 390 0 390.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 55 11 6.98 32.58 GT 1.8295 AG 1.9329 1.3218 1923 0
STX16--NPEPL1 164 5 164.00 4.98 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 984 140 0.17 1.21 GT 1.7968 AG 1.8256 0.5727 1940 0
STX16--NPEPL1 4 1 4.00 0.02 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1007 140 0.01 0.04 GT 1.8062 AG 1.8256 0.0137 2729 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 1886 chr20:58652138:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1798 140 0.00 0.01 GT 1.9329 AG 1.8256 0.0034 1285 0
TLK2--FAM157A 69 1 69.00 1.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ FAM157A^ENSG00000236438.7 45187 chr3:198180755:+ ONLY_REF_SPLICE YES 465 47 0.15 1.48 GT 1.8892 AG 1.8892 0.2372 2733 0
36 rows