File Info
- Filename
- FFPE_V4_0001_RNA_0005_23KMKGLT4_17.FusionInspector.fusions.abridged.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0005_23KMKGLT4_17.FusionInspector.fusions.abridged.tsv
- Size
- 6.3 KB
- Workflow Run
- dev_rna_exp0004_2cae617
- Published
- May 16, 2026 6:23 AM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | LeftGene | LeftLocalBreakpoint | LeftBreakpoint | RightGene | RightLocalBreakpoint | RightBreakpoint | SpliceType | LargeAnchorSupport | NumCounterFusionLeft | NumCounterFusionRight | FAR_left | FAR_right | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | FFPM | microh_brkpt_dist | num_microh_near_brkpt |
| FGFR3--TACC3 | 5613 | 8 | 5613.00 | 7.98 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 27590 | chr4:1739702:+ | ONLY_REF_SPLICE | YES | 87 | 2982 | 63.89 | 1.88 | GT | 1.8892 | AG | 1.7819 | 19.0513 | 627 | 0 |
| FGFR3--TACC3 | 12 | 0 | 12.00 | 0.00 | FGFR3^ENSG00000068078.20 | 9603 | chr4:1806659:+ | TACC3^ENSG00000013810.20 | 27862 | chr4:1739974:+ | INCL_NON_REF_SPLICE | YES | 2015 | 3198 | 0.01 | 0.00 | GC | 1.7819 | AG | 1.7819 | 0.0407 | 630 | 0 |
| FGFR3--TACC3 | 8 | 8 | 8.00 | 0.01 | FGFR3^ENSG00000068078.20 | 9880 | chr4:1806936:+ | TACC3^ENSG00000013810.20 | 27593 | chr4:1739705:+ | INCL_NON_REF_SPLICE | YES | 33 | 3070 | 0.50 | 0.01 | GA | 1.8892 | TA | 1.5219 | 0.0271 | 623 | 0 |
| FGFR3--TACC3 | 7 | 8 | 7.00 | 0.01 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 22063 | chr4:1730798:+ | INCL_NON_REF_SPLICE | NO | 87 | 2986 | 0.18 | 0.01 | GT | 1.8892 | AG | 1.6895 | 0.0237 | 1411 | 0 |
| TMPRSS2--ERG | 4642 | 0 | 4642.00 | 0.00 | TMPRSS2^ENSG00000184012.14 | 4652 | chr21:41508081:- | ERG^ENSG00000157554.19 | 28751 | chr21:38584945:- | ONLY_REF_SPLICE | YES | 12 | 106 | 357.15 | 43.39 | GT | 1.6895 | AG | 1.9219 | 15.7332 | 1104 | 0 |
| TMPRSS2--ERG | 4 | 0 | 4.00 | 0.00 | TMPRSS2^ENSG00000184012.14 | 4654 | chr21:41508079:- | ERG^ENSG00000157554.19 | 28752 | chr21:38584944:- | INCL_NON_REF_SPLICE | YES | 0 | 116 | 5.00 | 0.04 | GA | 1.7232 | GG | 1.8295 | 0.0136 | 1105 | 0 |
| ETV6--NTRK3 | 1680 | 8 | 1680.00 | 8.00 | ETV6^ENSG00000139083.11 | 11237 | chr12:11869969:+ | NTRK3^ENSG00000140538.16 | 46238 | chr15:87940753:- | ONLY_REF_SPLICE | YES | 2980 | 22 | 0.57 | 73.43 | GT | 1.7819 | AG | 1.9656 | 5.7212 | 1252 | 0 |
| FGFR3--BAIAP2L1 | 1668 | 5 | 1668.00 | 5.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | BAIAP2L1^ENSG00000006453.14 | 16927 | chr7:98362432:- | ONLY_REF_SPLICE | YES | 88 | 60 | 18.81 | 27.44 | GT | 1.8892 | AG | 1.8062 | 5.6703 | 1171 | 0 |
| LMNA--NTRK1 | 1632 | 10 | 1632.00 | 9.99 | LMNA^ENSG00000160789.23 | 17733 | chr1:156130773:+ | NTRK1^ENSG00000198400.13 | 40289 | chr1:156874906:+ | ONLY_REF_SPLICE | YES | 4787 | 408 | 0.34 | 4.02 | GT | 1.7465 | AG | 1.5058 | 5.5653 | 947 | 0 |
| LMNA--NTRK1 | 3 | 8 | 3.00 | 0.01 | LMNA^ENSG00000160789.23 | 17734 | chr1:156130774:+ | NTRK1^ENSG00000198400.13 | 40292 | chr1:156874909:+ | INCL_NON_REF_SPLICE | YES | 4787 | 467 | 0.00 | 0.03 | TG | 1.7465 | TC | 1.4566 | 0.0102 | 949 | 0 |
| TPM3--NTRK1 | 1480 | 4 | 1480.00 | 4.00 | TPM3^ENSG00000143549.21 | 13389 | chr1:154170400:- | NTRK1^ENSG00000198400.13 | 42070 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 7881 | 38 | 0.19 | 38.08 | GT | 1.9329 | AG | 1.6895 | 5.0298 | 355 | 0 |
| NCOA4--RET | 1412 | 6 | 1412.00 | 6.00 | NCOA4^ENSG00000266412.6 | 9075 | chr10:46012883:- | RET^ENSG00000165731.20 | 30127 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 3125 | 578 | 0.45 | 2.45 | GT | 1.9086 | AG | 1.8323 | 4.806 | 5144 | 0 |
| CCDC6--RET | 1251 | 5 | 1251.00 | 5.00 | CCDC6^ENSG00000108091.11 | 1435 | chr10:59906122:- | RET^ENSG00000165731.20 | 31587 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 2288 | 578 | 0.55 | 2.17 | GT | 1.8892 | AG | 1.8323 | 4.2569 | 2092 | 0 |
| KIF5B--RET | 1063 | 10 | 1063.00 | 10.00 | KIF5B^ENSG00000170759.11 | 19977 | chr10:32017143:- | RET^ENSG00000165731.20 | 38832 | chr10:43114480:+ | ONLY_REF_SPLICE | YES | 1770 | 21 | 0.61 | 48.82 | GT | 1.9656 | AG | 1.9656 | 3.6367 | 3178 | 0 |
| SLC34A2--ROS1 | 866 | 21 | 866.00 | 20.77 | SLC34A2^ENSG00000157765.13 | 6084 | chr4:25664330:+ | ROS1^ENSG00000047936.11 | 58025 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 0 | 48 | 888.00 | 18.12 | GT | 1.8892 | AG | 1.7465 | 3.0056 | 999 | 0 |
| SLC34A2--ROS1 | 7 | 15 | 7.00 | 0.12 | SLC34A2^ENSG00000157765.13 | 6088 | chr4:25664334:+ | ROS1^ENSG00000047936.11 | 58028 | chr6:117324412:- | INCL_NON_REF_SPLICE | YES | 0 | 88 | 23.00 | 0.26 | GA | 1.7465 | TG | 1.8892 | 0.0241 | 1002 | 0 |
| SLC34A2--ROS1 | 3 | 21 | 3.00 | 0.07 | SLC34A2^ENSG00000157765.13 | 6088 | chr4:25664334:+ | ROS1^ENSG00000047936.11 | 58027 | chr6:117324413:- | INCL_NON_REF_SPLICE | YES | 0 | 71 | 25.00 | 0.35 | GA | 1.7465 | AT | 1.8892 | 0.0104 | 1001 | 0 |
| SLC34A2--ROS1 | 3 | 12 | 3.00 | 0.04 | SLC34A2^ENSG00000157765.13 | 6088 | chr4:25664334:+ | ROS1^ENSG00000047936.11 | 58031 | chr6:117324409:- | INCL_NON_REF_SPLICE | YES | 0 | 116 | 16.00 | 0.14 | GA | 1.7465 | TT | 1.8892 | 0.0103 | 1005 | 0 |
| SLC34A2--ROS1 | 4 | 0 | 4.00 | 0.00 | SLC34A2^ENSG00000157765.13 | 4724 | chr4:25662611:+ | ROS1^ENSG00000047936.11 | 58054 | chr6:117324386:- | INCL_NON_REF_SPLICE | YES | 520 | 213 | 0.01 | 0.02 | AG | 1.2419 | TC | 1.4295 | 0.0136 | 1699 | 0 |
| EML4--ALK | 818 | 0 | 818.00 | 0.00 | EML4^ENSG00000143924.19 | 17400 | chr2:42295516:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 745 | 71 | 1.10 | 11.38 | GT | 1.6895 | AG | 1.9086 | 2.7725 | 1550 | 0 |
| CD74--ROS1 | 786 | 3 | 786.00 | 2.95 | CD74^ENSG00000019582.16 | 4990 | chr5:150404680:- | ROS1^ENSG00000047936.11 | 48731 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 23161 | 49 | 0.03 | 15.80 | GT | 1.7819 | AG | 1.7465 | 2.674 | 2407 | 0 |
| CD74--ROS1 | 6 | 3 | 6.00 | 0.02 | CD74^ENSG00000019582.16 | 4992 | chr5:150404678:- | ROS1^ENSG00000047936.11 | 48732 | chr6:117324414:- | INCL_NON_REF_SPLICE | YES | 23162 | 55 | 0.00 | 0.18 | AC | 1.9329 | GA | 1.8295 | 0.0204 | 2408 | 0 |
| CD74--ROS1 | 6 | 3 | 6.00 | 0.02 | CD74^ENSG00000019582.16 | 4989 | chr5:150404681:- | ROS1^ENSG00000047936.11 | 12651 | chr6:117425921:- | INCL_NON_REF_SPLICE | NO | 25084 | 0 | 0.00 | 10.00 | GG | 1.7819 | TT | 1.9656 | 0.0204 | 3299 | 0 |
| CD74--ROS1 | 3 | 2 | 3.00 | 0.01 | CD74^ENSG00000019582.16 | 4992 | chr5:150404678:- | ROS1^ENSG00000047936.11 | 48734 | chr6:117324412:- | INCL_NON_REF_SPLICE | NO | 23162 | 89 | 0.00 | 0.07 | AC | 1.9329 | TG | 1.8892 | 0.0102 | 2407 | 0 |
| TFG--NTRK1 | 608 | 1 | 608.00 | 1.00 | TFG^ENSG00000114354.15 | 9135 | chr3:100732672:+ | NTRK1^ENSG00000198400.13 | 37655 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 2393 | 37 | 0.25 | 16.05 | GT | 1.9329 | AG | 1.6895 | 2.0641 | 883 | 0 |
| EGFR--SEPTIN14 | 505 | 4 | 505.00 | 4.00 | EGFR^ENSG00000146648.19 | 30734 | chr7:55200413:+ | SEPTIN14^ENSG00000154997.9 | 54769 | chr7:55796092:- | ONLY_REF_SPLICE | YES | 18 | 21 | 26.84 | 23.18 | GT | 1.8892 | AG | 1.9899 | 1.7252 | 658 | 0 |
| PAX8--PPARG | 502 | 1 | 502.00 | 1.00 | PAX8^ENSG00000125618.18 | 9714 | chr2:113235394:- | PPARG^ENSG00000132170.23 | 31404 | chr3:12379704:+ | ONLY_REF_SPLICE | YES | 82 | 17 | 6.07 | 28.00 | GT | 1.8295 | AG | 1.9329 | 1.7048 | 1923 | 0 |
| SLC45A3--BRAF | 488 | 0 | 488.00 | 0.00 | SLC45A3^ENSG00000158715.6 | 1116 | chr1:205680394:- | BRAF^ENSG00000157764.14 | 25172 | chr7:140794467:- | ONLY_REF_SPLICE | YES | 1 | 1576 | 244.50 | 0.31 | GT | 1.5628 | AG | 1.7465 | 1.654 | 2599 | 0 |
| STX16--NPEPL1 | 159 | 0 | 159.00 | 0.00 | STX16^ENSG00000124222.22 | 8855 | chr20:58673711:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1164 | 166 | 0.14 | 0.96 | GT | 1.7968 | AG | 1.8256 | 0.5389 | 1940 | 0 |
| STX16--NPEPL1 | 3 | 0 | 3.00 | 0.00 | STX16^ENSG00000124222.22 | 7774 | chr20:58671297:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1154 | 166 | 0.00 | 0.02 | GT | 1.8062 | AG | 1.8256 | 0.0102 | 2729 | 0 |
| STX16--NPEPL1 | 2 | 0 | 2.00 | 0.00 | STX16^ENSG00000124222.22 | 1835 | chr20:58652087:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 2180 | 166 | 0.00 | 0.02 | GT | 1.9899 | AG | 1.8256 | 0.0068 | 1258 | 0 |
32 rows