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Filename
FFPE_HD835_01_RNA_0001_23LGNLLT4_3.starfusion.starfusion.fusion_predictions.filter_summary.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0005/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/starfusion/FFPE_HD835_01_RNA_0001_23LGNLLT4_3.starfusion.starfusion.fusion_predictions.filter_summary.txt
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1.4 KB
Workflow Run
dev_rna_exp0005_2cae617
Published
May 16, 2026 6:04 AM

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STAR-FUSION FILTERING SUMMARY
================================================================================

Input file: FFPE_HD835_01_RNA_0001_23LGNLLT4_3.starfusion.starfusion.fusion_predictions.tsv
Blacklist: blacklist_hg38_GRCh38_v2.4.0.tsv.gz
Filter config: starfusion_filter_config.yaml
Output file: FFPE_HD835_01_RNA_0001_23LGNLLT4_3.starfusion.starfusion.fusion_predictions.filter_summary.tsv

Total fusions: 1796
Pass (CALL=1): 11 (0.6%)
Fail (CALL=0): 1785 (99.4%)

Blacklist Flagging:
  Total blacklisted: 295
  All blacklisted fusions have CALL=0

Failure Reasons:
  Read count too low: 1 < 8: 954
  Excluded SpliceType: INCL_NON_REF_SPLICE: 432
  Blacklisted: 172
  Blacklisted; aih_curated_blacklist score(3): 85
  Read count too low: 2 < 8: 36
  aih_curated_blacklist score(3): 35
  Excluded annotation pattern: HGNC_GENEFAM: 19
  Read count too low: 3 < 8: 9
  Excluded annotation pattern: GTEx_recurrent_StarF2019: 7
  Read count too low: 4 < 8: 6
  Excluded annotation pattern: DGD_PARALOGS: 6
  Does not meet inclusion criteria: 5
  Read count too low: 5 < 8: 5
  Excluded annotation pattern: ConjoinG: 5
  Read count too low: 6 < 8: 4
  aih_curated_blacklist score(5): 2
  Read count too low: 7 < 8: 2
  aih_curated_blacklist score(6): 1

Breakdown by SpliceType:
  INCL_NON_REF_SPLICE: 0 pass, 804 fail (total: 804)
  ONLY_REF_SPLICE: 11 pass, 981 fail (total: 992)