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Filename
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0005/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2.FusionInspector.fusions.abridged.tsv
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6.1 KB
Workflow Run
dev_rna_exp0005_2cae617
Published
May 16, 2026 6:33 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 4337 8 4337.00 7.98 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 96 3206 44.80 1.36 GT 1.8892 AG 1.7819 14.7541 627 0
FGFR3--TACC3 6 8 6.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 29 3286 0.50 0.00 GA 1.8892 TA 1.5219 0.0204 623 0
FGFR3--TACC3 4 8 4.00 0.01 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 22063 chr4:1730798:+ INCL_NON_REF_SPLICE NO 96 2889 0.13 0.00 GT 1.8892 AG 1.6895 0.0136 1411 0
FGFR3--TACC3 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9097 chr4:1806153:+ TACC3^ENSG00000013810.20 27645 chr4:1739757:+ INCL_NON_REF_SPLICE YES 480 3477 0.01 0.00 AC 1.8892 CC 1.7819 0.0102 129 0
TMPRSS2--ERG 3858 0 3858.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 8 72 428.78 52.86 GT 1.6895 AG 1.9219 13.1005 1104 0
FGFR3--BAIAP2L1 1263 3 1263.00 3.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 98 55 12.80 22.62 GT 1.8892 AG 1.8062 4.2989 1171 0
ETV6--NTRK3 1183 6 1183.00 5.98 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3011 15 0.40 74.38 GT 1.7819 AG 1.9656 4.0374 1252 0
ETV6--NTRK3 6 4 6.00 0.02 ETV6^ENSG00000139083.11 11230 chr12:11869962:+ NTRK3^ENSG00000140538.16 46232 chr15:87940759:- INCL_NON_REF_SPLICE YES 3129 1 0.00 5.50 AT 1.9656 TC 1.9899 0.0205 1258 0
LMNA--NTRK1 1171 5 1171.00 4.99 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 3737 307 0.31 3.82 GT 1.7465 AG 1.5058 3.9932 947 0
LMNA--NTRK1 5 0 5.00 0.00 LMNA^ENSG00000160789.23 12545 chr1:156115077:+ NTRK1^ENSG00000198400.13 40366 chr1:156874983:+ INCL_NON_REF_SPLICE YES 3336 855 0.00 0.01 AC 1.8892 GG 1.7968 0.017 554 0
LMNA--NTRK1 3 4 3.00 0.01 LMNA^ENSG00000160789.23 17734 chr1:156130774:+ NTRK1^ENSG00000198400.13 40292 chr1:156874909:+ INCL_NON_REF_SPLICE NO 3737 338 0.00 0.02 TG 1.7465 TC 1.4566 0.0102 949 0
NCOA4--RET 1029 2 1029.00 2.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 2845 478 0.36 2.15 GT 1.9086 AG 1.8323 3.5009 5144 0
TPM3--NTRK1 1028 1 1028.00 1.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 7572 34 0.14 29.43 GT 1.9329 AG 1.6895 3.4941 355 0
KIF5B--RET 787 6 787.00 5.97 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1633 16 0.49 46.71 GT 1.9656 AG 1.9656 2.6927 3178 0
KIF5B--RET 4 6 4.00 0.03 KIF5B^ENSG00000170759.11 19980 chr10:32017140:- RET^ENSG00000165731.20 38836 chr10:43114484:+ INCL_NON_REF_SPLICE YES 1631 27 0.01 0.39 AG 1.9656 CC 1.9656 0.0137 3174 0
CD74--ROS1 748 5 748.00 4.95 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 23206 42 0.03 17.53 GT 1.7819 AG 1.7465 2.5568 2407 0
CD74--ROS1 7 5 7.00 0.05 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 23214 46 0.00 0.28 AC 1.9329 GA 1.8295 0.024 2408 0
EML4--ALK 721 0 721.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 779 53 0.93 13.37 GT 1.6895 AG 1.9086 2.4483 1550 0
CCDC6--RET 680 2 680.00 2.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 2276 478 0.30 1.43 GT 1.8892 AG 1.8323 2.3159 2092 0
SLC34A2--ROS1 535 9 535.00 9.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 1 42 272.50 12.67 GT 1.8892 AG 1.7465 1.8473 999 0
SLC34A2--ROS1 3 0 3.00 0.00 SLC34A2^ENSG00000157765.13 4925 chr4:25662812:+ ROS1^ENSG00000047936.11 60312 chr6:117319963:- INCL_NON_REF_SPLICE YES 611 1341 0.01 0.00 CT 1.7968 GT 1.9086 0.0102 1153 0
SLC45A3--BRAF 460 0 460.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 1689 461.00 0.27 GT 1.5628 AG 1.7465 1.562 2599 0
PAX8--PPARG 431 3 431.00 3.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 128 18 3.37 22.89 GT 1.8295 AG 1.9329 1.4737 1923 0
EGFR--SEPTIN14 368 1 368.00 1.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 7 37 46.25 9.74 GT 1.8892 AG 1.9899 1.253 658 0
TFG--NTRK1 363 1 363.00 1.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 2153 34 0.17 10.43 GT 1.9329 AG 1.6895 1.236 883 0
STX16--NPEPL1 139 2 139.00 1.97 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1125 177 0.13 0.80 GT 1.7968 AG 1.8256 0.4787 1940 0
STX16--NPEPL1 4 1 4.00 0.03 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1165 177 0.01 0.03 GT 1.8062 AG 1.8256 0.0137 2729 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 2098 177 0.00 0.01 GT 1.9899 AG 1.8256 0.0034 1258 0
TLK2--FAM157A 45 0 45.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ FAM157A^ENSG00000236438.7 45187 chr3:198180755:+ ONLY_REF_SPLICE YES 578 39 0.08 1.15 GT 1.8892 AG 1.8892 0.1528 2733 0
BX571818.1--TMEM200A 23 0 23.00 0.00 BX571818.1^ENSG00000285417.1 5765 chr1:206053265:+ TMEM200A^ENSG00000164484.12 19910 chr6:130440407:+ ONLY_REF_SPLICE YES 228 131 0.10 0.18 GT 1.9656 AG 1.7465 0.0781 1493 0
31 rows