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Filename
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0005/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9.FusionInspector.fusions.abridged.tsv
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6.5 KB
Workflow Run
dev_rna_exp0005_2cae617
Published
May 16, 2026 6:57 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 6503 13 6503.00 12.97 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 93 3525 69.33 1.85 GT 1.8892 AG 1.7819 22.0827 627 0
FGFR3--TACC3 9 13 9.00 0.02 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE YES 20 3576 1.10 0.01 GA 1.8892 GG 1.7819 0.0306 625 0
FGFR3--TACC3 4 10 4.00 0.01 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 299 3460 0.05 0.00 AC 1.8892 AG 1.7819 0.0136 633 0
FGFR3--TACC3 3 13 3.00 0.01 FGFR3^ENSG00000068078.20 9885 chr4:1806941:+ TACC3^ENSG00000013810.20 27598 chr4:1739710:+ INCL_NON_REF_SPLICE YES 20 3759 0.81 0.00 CT 1.9086 GC 1.4295 0.0102 617 0
FGFR3--TACC3 3 3 3.00 0.00 FGFR3^ENSG00000068078.20 9831 chr4:1806887:+ TACC3^ENSG00000013810.20 27618 chr4:1739730:+ INCL_NON_REF_SPLICE YES 509 3671 0.01 0.00 AG 1.8295 GG 1.7968 0.0102 628 0
TMPRSS2--ERG 5908 0 5908.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 4 96 1181.80 60.92 GT 1.6895 AG 1.9219 20.0222 1104 0
FGFR3--BAIAP2L1 2026 7 2026.00 7.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 95 67 21.19 29.91 GT 1.8892 AG 1.8062 6.8898 1171 0
ETV6--NTRK3 1905 3 1905.00 3.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3561 23 0.54 79.54 GT 1.7819 AG 1.9656 6.4663 1252 0
ETV6--NTRK3 1 0 1.00 0.00 ETV6^ENSG00000139083.11 9691 chr12:11853561:+ NTRK3^ENSG00000140538.16 40814 chr15:88033045:- ONLY_REF_SPLICE YES 2071 0 0.00 2.00 GT 1.6402 AG 1.8256 0.0034 1246 0
LMNA--NTRK1 1637 9 1637.00 8.97 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 4894 441 0.34 3.73 GT 1.7465 AG 1.5058 5.5782 947 0
LMNA--NTRK1 5 9 5.00 0.03 LMNA^ENSG00000160789.23 17734 chr1:156130774:+ NTRK1^ENSG00000198400.13 40292 chr1:156874909:+ INCL_NON_REF_SPLICE YES 4893 497 0.00 0.03 TG 1.7465 TC 1.4566 0.017 949 0
TPM3--NTRK1 1589 4 1589.00 4.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 8293 40 0.19 38.88 GT 1.9329 AG 1.6895 5.3987 355 0
NCOA4--RET 1410 4 1410.00 3.99 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 3471 687 0.41 2.06 GT 1.9086 AG 1.8323 4.792 5144 0
NCOA4--RET 3 4 3.00 0.01 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30130 chr10:43116587:+ INCL_NON_REF_SPLICE YES 3471 735 0.00 0.01 GT 1.9086 AG 1.8323 0.0102 5141 0
KIF5B--RET 1258 8 1258.00 7.98 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1922 23 0.66 52.79 GT 1.9656 AG 1.9656 4.2904 3178 0
KIF5B--RET 3 8 3.00 0.02 KIF5B^ENSG00000170759.11 19975 chr10:32017145:- RET^ENSG00000165731.20 38831 chr10:43114479:+ INCL_NON_REF_SPLICE NO 1944 2 0.01 4.00 TG 1.9899 CA 1.9656 0.0103 3181 0
CCDC6--RET 1092 6 1092.00 6.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 2573 687 0.43 1.60 GT 1.8892 AG 1.8323 3.7211 2092 0
EML4--ALK 977 1 977.00 1.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 965 59 1.01 16.32 GT 1.6895 AG 1.9086 3.3145 1550 0
CD74--ROS1 901 10 901.00 9.96 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 23958 52 0.04 17.21 GT 1.7819 AG 1.7465 3.0873 2407 0
CD74--ROS1 4 10 4.00 0.04 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 23969 57 0.00 0.26 AC 1.9329 GA 1.8295 0.0137 2408 0
SLC34A2--ROS1 751 22 751.00 21.89 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 51 774.00 14.88 GT 1.8892 AG 1.7465 2.6193 999 0
SLC34A2--ROS1 5 17 5.00 0.11 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 0 91 23.00 0.25 GA 1.7465 TG 1.8892 0.0173 1002 0
PAX8--PPARG 711 0 711.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 124 15 5.70 44.50 GT 1.8295 AG 1.9329 2.4096 1923 0
PAX8--PPARG 5 0 5.00 0.00 PAX8^ENSG00000125618.18 9681 chr2:113235427:- PPARG^ENSG00000132170.23 31573 chr3:12379873:+ INCL_NON_REF_SPLICE YES 143 110 0.04 0.05 AC 1.8256 AC 1.8295 0.0169 1959 0
SLC45A3--BRAF 705 0 705.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 1833 706.00 0.38 GT 1.5628 AG 1.7465 2.3892 2599 0
TFG--NTRK1 662 3 662.00 3.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 2780 40 0.24 16.24 GT 1.9329 AG 1.6895 2.2537 883 0
EGFR--SEPTIN14 506 4 506.00 4.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 16 33 30.06 15.03 GT 1.8892 AG 1.9899 1.7284 658 0
STX16--NPEPL1 168 1 168.00 1.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1191 179 0.14 0.94 GT 1.7968 AG 1.8256 0.5728 1940 0
STX16--NPEPL1 6 0 6.00 0.00 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1206 179 0.01 0.04 GT 1.8062 AG 1.8256 0.0203 2729 0
STX16--NPEPL1 2 0 2.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 2253 179 0.00 0.02 GT 1.9899 AG 1.8256 0.0068 1258 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 19290 chr20:58693737:+ ONLY_REF_SPLICE YES 1191 1280 0.00 0.00 GT 1.7968 AG 1.7819 0.0034 1248 0
TLK2--AC240565.1 43 0 43.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 593 19 0.07 2.20 GT 1.8892 AG 1.8892 0.1457 1734 0
33 rows