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Filename
NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion_100M__1bb6229e--20260226-142939/fusioninspector/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3.FusionInspector.fusions.abridged.tsv
Size
11.6 KB
Workflow Run
dev_rna_exp0008_1bb6229e
Published
Feb 26, 2026 11:35 PM

Content

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
STAG3L3--AC090114.3 301 4 301.00 3.55 STAG3L3^ENSG00000174353.17 1230 chr7:73005693:- AC090114.3^ENSG00000280828.1 19364 chr7:128608118:+ ONLY_REF_SPLICE YES 67 209 4.50 1.46 GT 1.9899 AG 1.8892 3.0967 4340 0
STAG3L3--AC090114.3 37 5 37.00 1.45 STAG3L3^ENSG00000174353.17 1347 chr7:73005576:- AC090114.3^ENSG00000280828.1 19364 chr7:128608118:+ ONLY_REF_SPLICE YES 57 209 0.74 0.20 GT 1.9656 AG 1.8892 0.3909 4226 0
STAG3L3--AC090114.3 3 0 3.00 0.00 STAG3L3^ENSG00000174353.17 1230 chr7:73005693:- AC090114.3^ENSG00000280828.1 21553 chr7:128615860:+ ONLY_REF_SPLICE YES 67 113 0.06 0.04 GT 1.9899 AG 1.9656 0.0305 5299 0
EML4--ALK 271 0 271.00 0.00 EML4^ENSG00000143924.19 8520 chr2:42264951:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 358 157 0.76 1.72 GT 1.2419 AG 1.9086 2.7555 1008 0
EML4--ALK 166 0 166.00 0.00 EML4^ENSG00000143924.19 8300 chr2:42264731:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 367 157 0.45 1.06 GT 1.7819 AG 1.9086 1.6879 1031 0
EML4--ALK 4 0 4.00 0.00 EML4^ENSG00000143924.19 8519 chr2:42264950:+ ALK^ENSG00000171094.18 59001 chr2:29223530:- INCL_NON_REF_SPLICE YES 360 147 0.01 0.03 GG 1.2419 GC 1.9329 0.0407 1010 0
EML4--ALK 3 0 3.00 0.00 EML4^ENSG00000143924.19 8300 chr2:42264731:+ ALK^ENSG00000171094.18 57853 chr2:29224678:- ONLY_REF_SPLICE YES 367 0 0.01 4.00 GT 1.7819 AG 1.9329 0.0305 2168 0
DCBLD2--STXBP5L 191 3 191.00 2.99 DCBLD2^ENSG00000057019.16 19629 chr3:98808081:- STXBP5L^ENSG00000145087.13 53865 chr3:121318475:+ ONLY_REF_SPLICE YES 1266 15 0.15 12.19 GT 1.7819 AG 1.9086 1.9725 4623 0
DCBLD2--STXBP5L 4 0 4.00 0.00 DCBLD2^ENSG00000057019.16 6588 chr3:98849461:- STXBP5L^ENSG00000145087.13 53865 chr3:121318475:+ ONLY_REF_SPLICE YES 1404 15 0.00 0.31 GT 1.6402 AG 1.9086 0.0407 2425 0
DCBLD2--STXBP5L 1 2 1.00 0.01 DCBLD2^ENSG00000057019.16 19629 chr3:98808081:- STXBP5L^ENSG00000145087.13 56024 chr3:121378716:+ ONLY_REF_SPLICE YES 1266 87 0.00 0.05 GT 1.7819 AG 1.9219 0.0103 2516 0
DCBLD2--STXBP5L 1 0 1.00 0.00 DCBLD2^ENSG00000057019.16 6588 chr3:98849461:- STXBP5L^ENSG00000145087.13 56024 chr3:121378716:+ ONLY_REF_SPLICE YES 1404 87 0.00 0.02 GT 1.6402 AG 1.9219 0.0102 1088 0
DCBLD2--STXBP5L 1 0 1.00 0.00 DCBLD2^ENSG00000057019.16 1574 chr3:98901122:- STXBP5L^ENSG00000145087.13 53865 chr3:121318475:+ ONLY_REF_SPLICE YES 1514 15 0.00 0.12 GT 1.8256 AG 1.9086 0.0102 2194 0
ALK--PTPN3 154 1 154.00 1.00 ALK^ENSG00000171094.18 15377 chr2:29275099:- PTPN3^ENSG00000070159.14 41256 chr9:109457399:- ONLY_REF_SPLICE YES 3 132 39.00 1.17 GT 1.9086 AG 1.7465 1.5761 2315 0
SND1--CFTR 85 1 85.00 0.99 SND1^ENSG00000197157.11 24964 chr7:127991056:+ CFTR^ENSG00000001626.16 75444 chr7:117627522:+ ONLY_REF_SPLICE YES 6 15 12.43 5.44 GT 1.8295 AG 1.9656 0.8744 1208 0
SND1--CFTR 1 1 1.00 0.01 SND1^ENSG00000197157.11 24964 chr7:127991056:+ CFTR^ENSG00000001626.16 76833 chr7:117642438:+ ONLY_REF_SPLICE YES 6 34 0.43 0.09 GT 1.8295 AG 1.7465 0.0103 1635 0
SND1--CFTR 1 0 1.00 0.00 SND1^ENSG00000197157.11 20479 chr7:127904819:+ CFTR^ENSG00000001626.16 75444 chr7:117627522:+ ONLY_REF_SPLICE YES 8 15 0.22 0.12 GT 1.9329 AG 1.9656 0.0102 1499 0
SND1--CFTR 1 0 1.00 0.00 SND1^ENSG00000197157.11 22748 chr7:127929329:+ CFTR^ENSG00000001626.16 75444 chr7:117627522:+ ONLY_REF_SPLICE YES 7 15 0.25 0.12 GT 1.7819 AG 1.9656 0.0102 992 0
AC078846.1--SND1 73 1 73.00 0.41 AC078846.1^ENSG00000273329.1 1269 chr7:129611362:- SND1^ENSG00000197157.11 17029 chr7:127694828:+ INCL_NON_REF_SPLICE YES 6 3 10.71 18.75 GC 1.6729 AG 1.8892 0.7465 1355 0
AC078846.1--SND1 42 1 42.00 0.23 AC078846.1^ENSG00000273329.1 1313 chr7:129611318:- SND1^ENSG00000197157.11 17029 chr7:127694828:+ INCL_NON_REF_SPLICE YES 4 3 8.80 11.00 GT 1.5656 AG 1.8892 0.4294 1338 0
AC078846.1--SND1 32 1 32.00 0.18 AC078846.1^ENSG00000273329.1 1310 chr7:129611321:- SND1^ENSG00000197157.11 17029 chr7:127694828:+ INCL_NON_REF_SPLICE YES 4 3 6.80 8.50 GT 1.5058 AG 1.8892 0.3272 1339 0
AC078846.1--SND1 10 2 10.00 0.38 AC078846.1^ENSG00000273329.1 5935 chr7:129606696:- SND1^ENSG00000197157.11 17029 chr7:127694828:+ INCL_NON_REF_SPLICE YES 4 3 2.60 3.25 GC 1.9329 AG 1.8892 0.1056 2345 0
AC078846.1--SND1 9 2 9.00 0.34 AC078846.1^ENSG00000273329.1 5551 chr7:129607080:- SND1^ENSG00000197157.11 17029 chr7:127694828:+ INCL_NON_REF_SPLICE YES 2 3 4.00 3.00 GT 1.7465 AG 1.8892 0.095 2399 0
AC078846.1--SND1 5 2 5.00 0.19 AC078846.1^ENSG00000273329.1 5743 chr7:129606888:- SND1^ENSG00000197157.11 17029 chr7:127694828:+ INCL_NON_REF_SPLICE YES 1 3 4.00 2.00 GT 1.9329 AG 1.8892 0.0527 2365 0
AC078846.1--SND1 4 2 4.00 0.15 AC078846.1^ENSG00000273329.1 5675 chr7:129606956:- SND1^ENSG00000197157.11 17029 chr7:127694828:+ INCL_NON_REF_SPLICE YES 3 3 1.75 1.75 GT 1.9656 AG 1.8892 0.0422 2376 0
AC078846.1--SND1 3 2 3.00 0.11 AC078846.1^ENSG00000273329.1 1562 chr7:129611069:- SND1^ENSG00000197157.11 17029 chr7:127694828:+ INCL_NON_REF_SPLICE YES 0 3 6.00 1.50 GT 1.5219 AG 1.8892 0.0316 1268 0
KATNAL1--ZC3H13 67 0 67.00 0.00 KATNAL1^ENSG00000102781.14 1221 chr13:30307331:- ZC3H13^ENSG00000123200.17 32091 chr13:45989097:- ONLY_REF_SPLICE YES 47 72 1.42 0.93 GT 1.8062 AG 1.7968 0.6813 546 0
KATNAL1--ZC3H13 8 0 8.00 0.00 KATNAL1^ENSG00000102781.14 1612 chr13:30306940:- ZC3H13^ENSG00000123200.17 32091 chr13:45989097:- ONLY_REF_SPLICE YES 48 72 0.18 0.12 GT 1.2729 AG 1.7968 0.0813 286 0
KATNAL1--ZC3H13 6 0 6.00 0.00 KATNAL1^ENSG00000102781.14 1839 chr13:30306713:- ZC3H13^ENSG00000123200.17 32091 chr13:45989097:- ONLY_REF_SPLICE YES 59 72 0.12 0.10 GT 1.9656 AG 1.7968 0.061 305 0
KATNAL1--ZC3H13 4 0 4.00 0.00 KATNAL1^ENSG00000102781.14 1792 chr13:30306760:- ZC3H13^ENSG00000123200.17 32091 chr13:45989097:- INCL_NON_REF_SPLICE YES 53 72 0.09 0.07 GT 1.9656 AG 1.7968 0.0407 288 0
KATNAL1--ZC3H13 3 1 3.00 1.00 KATNAL1^ENSG00000102781.14 1873 chr13:30306679:- ZC3H13^ENSG00000123200.17 32091 chr13:45989097:- INCL_NON_REF_SPLICE YES 58 72 0.08 0.07 GT 1.7232 AG 1.7968 0.0407 322 0
KATNAL1--ZC3H13 1 0 1.00 0.00 KATNAL1^ENSG00000102781.14 1788 chr13:30306764:- ZC3H13^ENSG00000123200.17 32091 chr13:45989097:- ONLY_REF_SPLICE YES 53 72 0.04 0.03 GT 1.9899 AG 1.7968 0.0102 286 0
TRMT61B--ALK 55 2 55.00 1.31 TRMT61B^ENSG00000171103.11 1731 chr2:28869579:- ALK^ENSG00000171094.18 22621 chr2:29297057:- ONLY_REF_SPLICE YES 65 8 0.88 6.44 GT 1.7465 AG 1.9329 0.5725 5174 0
TRMT61B--ALK 24 3 24.00 1.60 TRMT61B^ENSG00000171103.11 2834 chr2:28865017:- ALK^ENSG00000171094.18 22621 chr2:29297057:- ONLY_REF_SPLICE YES 64 8 0.43 3.11 GT 1.9086 AG 1.9329 0.2603 5388 0
TRMT61B--ALK 4 2 4.00 0.10 TRMT61B^ENSG00000171103.11 1750 chr2:28869560:- ALK^ENSG00000171094.18 22621 chr2:29297057:- INCL_NON_REF_SPLICE YES 62 8 0.11 0.78 GT 1.7819 AG 1.9329 0.0417 5176 0
PTPN3--ALK 35 2 35.00 2.00 PTPN3^ENSG00000070159.14 2250 chr9:109463297:- ALK^ENSG00000171094.18 51926 chr2:29275496:- ONLY_REF_SPLICE YES 127 22 0.30 1.65 GT 1.7819 AG 1.9086 0.3762 2554 0
PTPN3--ALK 1 0 1.00 0.00 PTPN3^ENSG00000070159.14 2250 chr9:109463297:- ALK^ENSG00000171094.18 52195 chr2:29275227:- ONLY_REF_SPLICE YES 127 110 0.02 0.02 GT 1.7819 AG 1.8323 0.0102 2285 0
PTCH1--LUC7L2 14 1 14.00 0.93 PTCH1^ENSG00000185920.16 5449 chr9:95506407:- LUC7L2^ENSG00000146963.18 47136 chr7:139376062:+ ONLY_REF_SPLICE YES 20 484 0.76 0.03 GT 1.6729 AG 1.9656 0.1519 1124 0
PTCH1--LUC7L2 1 1 1.00 0.07 PTCH1^ENSG00000185920.16 5449 chr9:95506407:- LUC7L2^ENSG00000146963.18 45475 chr7:139374401:+ ONLY_REF_SPLICE YES 20 446 0.14 0.01 GT 1.6729 AG 1.7968 0.0109 978 0
DELEC1--SENP7 10 0 10.00 0.00 DELEC1^ENSG00000173077.16 9192 chr9:115087454:+ SENP7^ENSG00000138468.16 35354 chr3:101459052:- ONLY_REF_SPLICE YES 0 71 11.00 0.15 GT 1.9329 AG 1.8323 0.1017 3579 0
DELEC1--SENP7 3 0 3.00 0.00 DELEC1^ENSG00000173077.16 8077 chr9:115084383:+ SENP7^ENSG00000138468.16 35354 chr3:101459052:- ONLY_REF_SPLICE YES 270 71 0.01 0.06 GT 1.9329 AG 1.8323 0.0305 2464 0
DELEC1--SENP7 1 0 1.00 0.00 DELEC1^ENSG00000173077.16 6948 chr9:115069070:+ SENP7^ENSG00000138468.16 36452 chr3:101417790:- ONLY_REF_SPLICE YES 2 52 0.67 0.04 GT 1.8892 AG 1.8892 0.0102 1663 0
COX7A2L--MAP4K3 6 0 6.00 0.00 COX7A2L^ENSG00000115944.15 8717 chr2:42361090:- MAP4K3^ENSG00000011566.15 30938 chr2:39315388:- ONLY_REF_SPLICE YES 360 170 0.02 0.04 GT 1.8892 AG 1.7465 0.061 5650 0
COX7A2L--MAP4K3 5 1 5.00 1.00 COX7A2L^ENSG00000115944.15 16383 chr2:42333667:- MAP4K3^ENSG00000011566.15 30938 chr2:39315388:- INCL_NON_REF_SPLICE YES 2 170 2.33 0.04 GT 1.5656 AG 1.7465 0.061 2144 0
GPT2--ZNF646 6 0 6.00 0.00 GPT2^ENSG00000166123.14 1597 chr16:46884958:+ ZNF646^ENSG00000167395.10 29133 chr16:31082971:+ ONLY_REF_SPLICE YES 209 81 0.03 0.09 GT 1.8323 AG 1.7819 0.061 145 0
GPT2--ZNF646 1 0 1.00 0.00 GPT2^ENSG00000166123.14 1597 chr16:46884958:+ ZNF646^ENSG00000167395.10 22408 chr16:31076246:+ ONLY_REF_SPLICE YES 209 16 0.01 0.12 GT 1.8323 AG 1.6729 0.0102 486 0
SND1--AC078846.1 5 0 5.00 0.00 SND1^ENSG00000197157.11 24964 chr7:127991056:+ AC078846.1^ENSG00000273329.1 45010 chr7:129607233:- INCL_NON_REF_SPLICE YES 6 0 0.86 6.00 GT 1.8295 AG 1.6402 0.0508 803 0
PTCH1--FMC1 4 0 4.00 0.00 PTCH1^ENSG00000185920.16 5449 chr9:95506407:- FMC1^ENSG00000164898.13 45098 chr7:139345501:+ ONLY_REF_SPLICE YES 20 123 0.24 0.04 GT 1.6729 AG 1.8892 0.0407 757 0
SENP7--STX17-AS1 3 0 3.00 0.00 SENP7^ENSG00000138468.16 10429 chr3:101366430:- STX17-AS1^ENSG00000255145.3 33022 chr9:99895005:- ONLY_REF_SPLICE YES 35 0 0.11 4.00 GT 1.9086 AG 1.9329 0.0305 4194 0
CFTR--SND1 2 0 2.00 0.00 CFTR^ENSG00000001626.16 36080 chr7:117627770:+ SND1^ENSG00000197157.11 58732 chr7:127694828:+ ONLY_REF_SPLICE YES 37 3 0.08 0.75 GT 1.8892 AG 1.8892 0.0203 2357 0
EGFR--SND1 2 0 2.00 0.00 EGFR^ENSG00000146648.19 1349 chr7:55019365:+ SND1^ENSG00000197157.11 67625 chr7:127990947:+ ONLY_REF_SPLICE YES 2412 7 0.00 0.38 GT 1.2729 AG 1.9656 0.0203 2612 0
EGFR--SND1 1 0 1.00 0.00 EGFR^ENSG00000146648.19 1349 chr7:55019365:+ SND1^ENSG00000197157.11 58369 chr7:127721287:+ ONLY_REF_SPLICE YES 2412 24 0.00 0.08 GT 1.2729 AG 1.8323 0.0102 4435 0
EGFR--SND1 1 0 1.00 0.00 EGFR^ENSG00000146648.19 26366 chr7:55181478:+ SND1^ENSG00000197157.11 67625 chr7:127990947:+ ONLY_REF_SPLICE YES 2082 7 0.00 0.25 GT 1.9086 AG 1.9656 0.0102 1025 0
EGFR--SND1 1 0 1.00 0.00 EGFR^ENSG00000146648.19 1349 chr7:55019365:+ SND1^ENSG00000197157.11 59483 chr7:127807484:+ ONLY_REF_SPLICE YES 2412 29 0.00 0.07 GT 1.2729 AG 1.3753 0.0102 4331 0
GLI3--CNTNAP2 2 0 2.00 0.00 GLI3^ENSG00000106571.15 6741 chr7:42223130:- CNTNAP2^ENSG00000174469.23 86836 chr7:148229646:+ ONLY_REF_SPLICE YES 146 0 0.02 3.00 GT 1.9329 AG 1.9656 0.0203 1734 0
PALM2AKAP2--APBA1 2 0 2.00 0.00 PALM2AKAP2^ENSG00000157654.19 2472 chr9:109514611:+ APBA1^ENSG00000107282.8 55191 chr9:69457139:- ONLY_REF_SPLICE YES 3 14 0.75 0.20 GT 1.9656 AG 1.9329 0.0203 3273 0
STXBP5L--DCBLD2 2 0 2.00 0.00 STXBP5L^ENSG00000145087.13 28600 chr3:121381532:+ DCBLD2^ENSG00000057019.16 49391 chr3:98825366:- ONLY_REF_SPLICE YES 140 1346 0.02 0.00 GT 1.9086 AG 1.6402 0.0203 1391 0
STXBP5L--DCBLD2 1 0 1.00 0.00 STXBP5L^ENSG00000145087.13 28600 chr3:121381532:+ DCBLD2^ENSG00000057019.16 46952 chr3:98881767:- ONLY_REF_SPLICE YES 140 1461 0.01 0.00 GT 1.9086 AG 1.7465 0.0102 2078 0
SENP7--DELEC1 1 0 1.00 0.00 SENP7^ENSG00000138468.16 6788 chr3:101398861:- DELEC1^ENSG00000173077.16 38918 chr9:115084255:+ ONLY_REF_SPLICE YES 62 113 0.03 0.02 GT 1.6895 AG 1.8892 0.0102 3279 0
TNC--DELEC1 1 0 1.00 0.00 TNC^ENSG00000041982.16 30084 chr9:115036098:- DELEC1^ENSG00000173077.16 51369 chr9:115120956:+ ONLY_REF_SPLICE YES 446 0 0.00 2.00 GT 1.8323 AG 1.5546 0.0102 1130 0
60 rows