File Info

Filename
SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1.bam_stat.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/QC/rseqc/SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1.bam_stat.txt
Size
863 bytes
Workflow Run
dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 5:02 PM

Content

View in new tab 
#==================================================
#All numbers are READ count
#==================================================

Total records:                          1049870061

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        457932715
Unmapped reads:                         9287118
mapq < mapq_cut (non-unique):           89900414

mapq >= mapq_cut (unique):              492749814
Read-1:                                 246655100
Read-2:                                 246094714
Reads map to '+':                       246397410
Reads map to '-':                       246352404
Non-splice reads:                       348918678
Splice reads:                           143831136
Reads mapped in proper pairs:           490872518
Proper-paired reads map to different chrom:0